-
1
-
-
0033762347
-
Energetic contribution of tRNA hybrid state formation to translocation catalysis on the ribosome
-
Semenkov, Y. P., M. V. Rodnina, and W. Wintermeyer. 2000. Energetic contribution of tRNA hybrid state formation to translocation catalysis on the ribosome. Nat. Struct. Biol. 7:1027-1031.
-
(2000)
Nat. Struct. Biol
, vol.7
, pp. 1027-1031
-
-
Semenkov, Y.P.1
Rodnina, M.V.2
Wintermeyer, W.3
-
2
-
-
0037459218
-
Rapid kinetic analysis of EF-G-dependent mRNA translocation in the ribosome
-
Studer, S. M., J. S. Feinberg, and S. Joseph. 2003. Rapid kinetic analysis of EF-G-dependent mRNA translocation in the ribosome. J. Mol. Biol. 327:369-381.
-
(2003)
J. Mol. Biol
, vol.327
, pp. 369-381
-
-
Studer, S.M.1
Feinberg, J.S.2
Joseph, S.3
-
3
-
-
0036282055
-
Accurate translocation of mRNA by the ribosome requires a peptidyl group or its analog on the tRNA moving into the 30S P site
-
Fredrick, K., and H. F. Noller. 2002. Accurate translocation of mRNA by the ribosome requires a peptidyl group or its analog on the tRNA moving into the 30S P site. Mol. Cell. 9:1125-1131.
-
(2002)
Mol. Cell
, vol.9
, pp. 1125-1131
-
-
Fredrick, K.1
Noller, H.F.2
-
4
-
-
0024334898
-
Interaction of transfer-RNA with 23s ribosomal-RNA in the ribosomal A-sites, P-sites, and E-sites
-
Moazed, D., and H. F. Noller. 1989. Interaction of transfer-RNA with 23s ribosomal-RNA in the ribosomal A-sites, P-sites, and E-sites. Cell. 57:585-597.
-
(1989)
Cell
, vol.57
, pp. 585-597
-
-
Moazed, D.1
Noller, H.F.2
-
5
-
-
0024458904
-
Intermediate states in the movement of transfer-RNA in the ribosome
-
Moazed, D., and H. F. Noller. 1989. Intermediate states in the movement of transfer-RNA in the ribosome. Nature. 342:142-148.
-
(1989)
Nature
, vol.342
, pp. 142-148
-
-
Moazed, D.1
Noller, H.F.2
-
6
-
-
0034618071
-
Visualization of tRNA movements on the Escherichia coli 70S ribosome during the elongation cycle
-
Agrawal, R. K., C. M. T. Spahn, P. Penczek, R. A. Grassucci, K. H. Nierhaus, and J. Frank. 2000. Visualization of tRNA movements on the Escherichia coli 70S ribosome during the elongation cycle. J. Cell Biol. 150:447-459.
-
(2000)
J. Cell Biol
, vol.150
, pp. 447-459
-
-
Agrawal, R.K.1
Spahn, C.M.T.2
Penczek, P.3
Grassucci, R.A.4
Nierhaus, K.H.5
Frank, J.6
-
7
-
-
0036177483
-
A pretranslocational intermediate in protein synthesis observed in crystals of enzymatically active 50S subunits
-
Schmeing, T. M., A. C. Seila, J. L. Hansen, B. Freeborn, J. K. Soukup, S. A. Scaringe, S. A. Strobel, P. B. Moore, and T. A. Steitz. 2002. A pretranslocational intermediate in protein synthesis observed in crystals of enzymatically active 50S subunits. Nat. Struct. Biol. 9:225-230.
-
(2002)
Nat. Struct. Biol
, vol.9
, pp. 225-230
-
-
Schmeing, T.M.1
Seila, A.C.2
Hansen, J.L.3
Freeborn, B.4
Soukup, J.K.5
Scaringe, S.A.6
Strobel, S.A.7
Moore, P.B.8
Steitz, T.A.9
-
8
-
-
4444313551
-
tRNA dynamics on the ribosome during translation
-
Blanchard, S. C., H. D. Kim, R. L. Gonzalez, J. D. Puglisi, and S. Chu. 2004. tRNA dynamics on the ribosome during translation. Proc. Natl. Acad. Sci. USA. 101:12893-12898.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 12893-12898
-
-
Blanchard, S.C.1
Kim, H.D.2
Gonzalez, R.L.3
Puglisi, J.D.4
Chu, S.5
-
10
-
-
0038286524
-
Catalysis of ribosomal translocation by sparsomycin
-
Fredrick, K., and H. F. Noller. 2003. Catalysis of ribosomal translocation by sparsomycin. Science. 300:1159-1162.
-
(2003)
Science
, vol.300
, pp. 1159-1162
-
-
Fredrick, K.1
Noller, H.F.2
-
11
-
-
0037015037
-
Structural insights into peptide bond formation
-
Hansen, J. L., T. M. Schmeing, P. B. Moore, and T. A. Steitz. 2002. Structural insights into peptide bond formation. Proc. Natl. Acad. Sci. USA. 99:11670-11675.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 11670-11675
-
-
Hansen, J.L.1
Schmeing, T.M.2
Moore, P.B.3
Steitz, T.A.4
-
12
-
-
2942592157
-
Contribution of the esterified amino acid to the binding of aminoacylated tRNAs to the ribosomal P- and A-sites
-
Fahlman, R. P., and O. C. Uhlenbeck. 2004. Contribution of the esterified amino acid to the binding of aminoacylated tRNAs to the ribosomal P- and A-sites. Biochemistry. 43:7575-7583.
-
(2004)
Biochemistry
, vol.43
, pp. 7575-7583
-
-
Fahlman, R.P.1
Uhlenbeck, O.C.2
-
13
-
-
18044373456
-
Short-range spectroscopic ruler based on a single-molecule optical switch
-
Bates, M., T. R. Blosser, and X. W. Zhuang. 2005. Short-range spectroscopic ruler based on a single-molecule optical switch. Phys. Rev. Lett. 94:108101.
-
(2005)
Phys. Rev. Lett
, vol.94
, pp. 108101
-
-
Bates, M.1
Blosser, T.R.2
Zhuang, X.W.3
-
14
-
-
15744396330
-
Carbocyanine dyes as efficient reversible single-molecule optical switch
-
Heilemann, M., E. Margeat, R. Kasper, M. Sauer, and P. Tinnefeld. 2005. Carbocyanine dyes as efficient reversible single-molecule optical switch. J. Am. Chem. Soc. 127:3801-3806.
-
(2005)
J. Am. Chem. Soc
, vol.127
, pp. 3801-3806
-
-
Heilemann, M.1
Margeat, E.2
Kasper, R.3
Sauer, M.4
Tinnefeld, P.5
-
15
-
-
0022893755
-
Analysis of the puromycin reaction. The ribosomal exclusion-principle for AcPhe-tRNA binding re-examined
-
Geigenmuller, U., T. P. Hausner, and K. H. Nierhaus. 1986. Analysis of the puromycin reaction. The ribosomal exclusion-principle for AcPhe-tRNA binding re-examined. Eur. J. Biochem. 161:715-721.
-
(1986)
Eur. J. Biochem
, vol.161
, pp. 715-721
-
-
Geigenmuller, U.1
Hausner, T.P.2
Nierhaus, K.H.3
-
16
-
-
0017730231
-
Inhibition of ribosomal translocation by viomycin
-
Modolell, J., and D. Vazquez. 1977. Inhibition of ribosomal translocation by viomycin. Eur. J. Biochem. 81:491-497.
-
(1977)
Eur. J. Biochem
, vol.81
, pp. 491-497
-
-
Modolell, J.1
Vazquez, D.2
-
17
-
-
0023604799
-
Chloramphenicol, erythromycin, carbomycin and vernamycin-B protect overlapping sites in the peptidyl transferase region of 23s-Ribosomal RNA
-
Moazed, D., and H. F. Noller. 1987. Chloramphenicol, erythromycin, carbomycin and vernamycin-B protect overlapping sites in the peptidyl transferase region of 23s-Ribosomal RNA. Biochimie. 69:879-884.
-
(1987)
Biochimie
, vol.69
, pp. 879-884
-
-
Moazed, D.1
Noller, H.F.2
-
18
-
-
0017818857
-
Viomycin favors formation of 70s ribosome couples
-
Yamada, T., and K. H. Nierhaus. 1978. Viomycin favors formation of 70s ribosome couples. Mol. Gen. Genet. 161:261-265.
-
(1978)
Mol. Gen. Genet
, vol.161
, pp. 261-265
-
-
Yamada, T.1
Nierhaus, K.H.2
-
19
-
-
6344252614
-
Conformational changes of the small ribosomal subunit during elongation factor G-dependent tRNA-mRNA translocation
-
Peske, F., A. Savelsbergh, V. I. Katunin, M. V. Rodnina, and W. Wintermeyer. 2004. Conformational changes of the small ribosomal subunit during elongation factor G-dependent tRNA-mRNA translocation. J. Mol. Biol. 343:1183-1194.
-
(2004)
J. Mol. Biol
, vol.343
, pp. 1183-1194
-
-
Peske, F.1
Savelsbergh, A.2
Katunin, V.I.3
Rodnina, M.V.4
Wintermeyer, W.5
-
20
-
-
15044352268
-
Chemical engineering of the peptidyl transferase center reveals an important role of the 2′-hydroxyl group of A2451
-
Erlacher, M. D., K. Lang, N. Shankaran, B. Wotzel, A. Huttenhofer, R. Micura, A. S. Mankin, and N. Polacek. 2005. Chemical engineering of the peptidyl transferase center reveals an important role of the 2′-hydroxyl group of A2451. Nucleic Acids Res. 33:1618-1627.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 1618-1627
-
-
Erlacher, M.D.1
Lang, K.2
Shankaran, N.3
Wotzel, B.4
Huttenhofer, A.5
Micura, R.6
Mankin, A.S.7
Polacek, N.8
-
21
-
-
7544220590
-
Substrate-assisted catalysis of peptide bond formation by the ribosome
-
Weinger, J. S., K. M. Parnell, S. Dorner, R. Green, and S. A. Strobel. 2004. Substrate-assisted catalysis of peptide bond formation by the ribosome. Nat. Struct. Mol. Biol. 11:1101-1106.
-
(2004)
Nat. Struct. Mol. Biol
, vol.11
, pp. 1101-1106
-
-
Weinger, J.S.1
Parnell, K.M.2
Dorner, S.3
Green, R.4
Strobel, S.A.5
-
22
-
-
2542564300
-
The ribosome as an entropy trap
-
Sievers, A., M. Beringer, M. V. Rodnina, and R. Wolfenden. 2004. The ribosome as an entropy trap. Proc. Natl. Acad. Sci. USA. 101:7897-7901.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 7897-7901
-
-
Sievers, A.1
Beringer, M.2
Rodnina, M.V.3
Wolfenden, R.4
-
23
-
-
0037006790
-
Mg2+-dependent conformational change of RNA studied by fluorescence correlation and FRET on immobilized single molecules
-
Kim, H. D., G. U. Nienhaus, T. Ha, J. W. Orr, J. R. Williamson, and S. Chu. 2002. Mg2+-dependent conformational change of RNA studied by fluorescence correlation and FRET on immobilized single molecules. Proc. Natl. Acad. Sci. USA. 99:4284-4289.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 4284-4289
-
-
Kim, H.D.1
Nienhaus, G.U.2
Ha, T.3
Orr, J.W.4
Williamson, J.R.5
Chu, S.6
-
24
-
-
0042925420
-
Single-molecule transition-state analysis of RNA folding
-
Bokinsky, G., D. Rueda, V. K. Misra, M. M. Rhodes, A. Gordus, H. P. Babcock, N. G. Walter, and X. W. Zhuang. 2003. Single-molecule transition-state analysis of RNA folding. Proc. Natl. Acad. Sci. USA. 100:9302-9307.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 9302-9307
-
-
Bokinsky, G.1
Rueda, D.2
Misra, V.K.3
Rhodes, M.M.4
Gordus, A.5
Babcock, H.P.6
Walter, N.G.7
Zhuang, X.W.8
-
25
-
-
0035805213
-
Crystal structure of the ribosome at 5.5 angstrom resolution
-
Yusupov, M. M., G. Z. Yusupova, A. Baucom, K. Lieberman, T. N. Earnest, J. H. D. Cate, and H. F. Noller. 2001. Crystal structure of the ribosome at 5.5 angstrom resolution. Science. 292:883-896.
-
(2001)
Science
, vol.292
, pp. 883-896
-
-
Yusupov, M.M.1
Yusupova, G.Z.2
Baucom, A.3
Lieberman, K.4
Earnest, T.N.5
Cate, J.H.D.6
Noller, H.F.7
-
26
-
-
33646007627
-
-
An RNA sensor for intracellular Mg2
-
Cromie, M. J., Y. X. Shi, T. Latifi, and E. A. Groisman. 2006. An RNA sensor for intracellular Mg2+. Cell. 125:71-84.
-
(2006)
Cell
, vol.125
, pp. 71-84
-
-
Cromie, M.J.1
Shi, Y.X.2
Latifi, T.3
Groisman, E.A.4
-
27
-
-
0034691576
-
A ratchet-like inter-subunit reorganization of the ribosome during translocation
-
Frank, J., and R. K. Agrawal. 2000. A ratchet-like inter-subunit reorganization of the ribosome during translocation. Nature. 406:318-322.
-
(2000)
Nature
, vol.406
, pp. 318-322
-
-
Frank, J.1
Agrawal, R.K.2
-
28
-
-
0042424707
-
Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy
-
Tama, F., M. Valle, J. Frank, and C. L. Brooks. 2003. Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy. Proc. Natl. Acad. Sci. USA. 100:9319-9323.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 9319-9323
-
-
Tama, F.1
Valle, M.2
Frank, J.3
Brooks, C.L.4
-
29
-
-
4344685227
-
Global ribosome motions revealed with elastic network model
-
Wang, Y. M., A. J. Rader, I. Bahar, and R. L. Jernigan. 2004. Global ribosome motions revealed with elastic network model. J. Struct. Biol. 147:302-314.
-
(2004)
J. Struct. Biol
, vol.147
, pp. 302-314
-
-
Wang, Y.M.1
Rader, A.J.2
Bahar, I.3
Jernigan, R.L.4
-
30
-
-
0037963475
-
Locking and unlocking of ribosomal motions
-
Valle, M., A. Zavialov, J. Sengupta, U. Rawat, M. Ehrenberg, and J. Frank. 2003. Locking and unlocking of ribosomal motions. Cell. 114:123-134.
-
(2003)
Cell
, vol.114
, pp. 123-134
-
-
Valle, M.1
Zavialov, A.2
Sengupta, J.3
Rawat, U.4
Ehrenberg, M.5
Frank, J.6
-
31
-
-
33947501707
-
Peptide bond formation destabilizes Shine-Dalgarno interaction on the ribosome
-
Uemura, S., M. Dorywalska, T. Lee, H. D. Kim, J. D. Puglisi, and S. Chu. 2007. Peptide bond formation destabilizes Shine-Dalgarno interaction on the ribosome. Nature. 446:454-457.
-
(2007)
Nature
, vol.446
, pp. 454-457
-
-
Uemura, S.1
Dorywalska, M.2
Lee, T.3
Kim, H.D.4
Puglisi, J.D.5
Chu, S.6
-
32
-
-
0034671274
-
Conformational changes in the ribosome induced by translational miscoding agents
-
Jerinic, O., and S. Joseph. 2000. Conformational changes in the ribosome induced by translational miscoding agents. J. Mol. Biol. 304:707-713.
-
(2000)
J. Mol. Biol
, vol.304
, pp. 707-713
-
-
Jerinic, O.1
Joseph, S.2
|