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Volumn 93, Issue 10, 2007, Pages 3575-3582

Fluctuations of transfer RNAs between classical and hybrid states

Author keywords

[No Author keywords available]

Indexed keywords

MAGNESIUM; PHENYLALANINE; TRANSFER RNA; VIOMYCIN;

EID: 36549020733     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1529/biophysj.107.109884     Document Type: Article
Times cited : (84)

References (32)
  • 1
    • 0033762347 scopus 로고    scopus 로고
    • Energetic contribution of tRNA hybrid state formation to translocation catalysis on the ribosome
    • Semenkov, Y. P., M. V. Rodnina, and W. Wintermeyer. 2000. Energetic contribution of tRNA hybrid state formation to translocation catalysis on the ribosome. Nat. Struct. Biol. 7:1027-1031.
    • (2000) Nat. Struct. Biol , vol.7 , pp. 1027-1031
    • Semenkov, Y.P.1    Rodnina, M.V.2    Wintermeyer, W.3
  • 2
    • 0037459218 scopus 로고    scopus 로고
    • Rapid kinetic analysis of EF-G-dependent mRNA translocation in the ribosome
    • Studer, S. M., J. S. Feinberg, and S. Joseph. 2003. Rapid kinetic analysis of EF-G-dependent mRNA translocation in the ribosome. J. Mol. Biol. 327:369-381.
    • (2003) J. Mol. Biol , vol.327 , pp. 369-381
    • Studer, S.M.1    Feinberg, J.S.2    Joseph, S.3
  • 3
    • 0036282055 scopus 로고    scopus 로고
    • Accurate translocation of mRNA by the ribosome requires a peptidyl group or its analog on the tRNA moving into the 30S P site
    • Fredrick, K., and H. F. Noller. 2002. Accurate translocation of mRNA by the ribosome requires a peptidyl group or its analog on the tRNA moving into the 30S P site. Mol. Cell. 9:1125-1131.
    • (2002) Mol. Cell , vol.9 , pp. 1125-1131
    • Fredrick, K.1    Noller, H.F.2
  • 4
    • 0024334898 scopus 로고
    • Interaction of transfer-RNA with 23s ribosomal-RNA in the ribosomal A-sites, P-sites, and E-sites
    • Moazed, D., and H. F. Noller. 1989. Interaction of transfer-RNA with 23s ribosomal-RNA in the ribosomal A-sites, P-sites, and E-sites. Cell. 57:585-597.
    • (1989) Cell , vol.57 , pp. 585-597
    • Moazed, D.1    Noller, H.F.2
  • 5
    • 0024458904 scopus 로고
    • Intermediate states in the movement of transfer-RNA in the ribosome
    • Moazed, D., and H. F. Noller. 1989. Intermediate states in the movement of transfer-RNA in the ribosome. Nature. 342:142-148.
    • (1989) Nature , vol.342 , pp. 142-148
    • Moazed, D.1    Noller, H.F.2
  • 6
    • 0034618071 scopus 로고    scopus 로고
    • Visualization of tRNA movements on the Escherichia coli 70S ribosome during the elongation cycle
    • Agrawal, R. K., C. M. T. Spahn, P. Penczek, R. A. Grassucci, K. H. Nierhaus, and J. Frank. 2000. Visualization of tRNA movements on the Escherichia coli 70S ribosome during the elongation cycle. J. Cell Biol. 150:447-459.
    • (2000) J. Cell Biol , vol.150 , pp. 447-459
    • Agrawal, R.K.1    Spahn, C.M.T.2    Penczek, P.3    Grassucci, R.A.4    Nierhaus, K.H.5    Frank, J.6
  • 10
    • 0038286524 scopus 로고    scopus 로고
    • Catalysis of ribosomal translocation by sparsomycin
    • Fredrick, K., and H. F. Noller. 2003. Catalysis of ribosomal translocation by sparsomycin. Science. 300:1159-1162.
    • (2003) Science , vol.300 , pp. 1159-1162
    • Fredrick, K.1    Noller, H.F.2
  • 12
    • 2942592157 scopus 로고    scopus 로고
    • Contribution of the esterified amino acid to the binding of aminoacylated tRNAs to the ribosomal P- and A-sites
    • Fahlman, R. P., and O. C. Uhlenbeck. 2004. Contribution of the esterified amino acid to the binding of aminoacylated tRNAs to the ribosomal P- and A-sites. Biochemistry. 43:7575-7583.
    • (2004) Biochemistry , vol.43 , pp. 7575-7583
    • Fahlman, R.P.1    Uhlenbeck, O.C.2
  • 13
    • 18044373456 scopus 로고    scopus 로고
    • Short-range spectroscopic ruler based on a single-molecule optical switch
    • Bates, M., T. R. Blosser, and X. W. Zhuang. 2005. Short-range spectroscopic ruler based on a single-molecule optical switch. Phys. Rev. Lett. 94:108101.
    • (2005) Phys. Rev. Lett , vol.94 , pp. 108101
    • Bates, M.1    Blosser, T.R.2    Zhuang, X.W.3
  • 14
    • 15744396330 scopus 로고    scopus 로고
    • Carbocyanine dyes as efficient reversible single-molecule optical switch
    • Heilemann, M., E. Margeat, R. Kasper, M. Sauer, and P. Tinnefeld. 2005. Carbocyanine dyes as efficient reversible single-molecule optical switch. J. Am. Chem. Soc. 127:3801-3806.
    • (2005) J. Am. Chem. Soc , vol.127 , pp. 3801-3806
    • Heilemann, M.1    Margeat, E.2    Kasper, R.3    Sauer, M.4    Tinnefeld, P.5
  • 15
    • 0022893755 scopus 로고
    • Analysis of the puromycin reaction. The ribosomal exclusion-principle for AcPhe-tRNA binding re-examined
    • Geigenmuller, U., T. P. Hausner, and K. H. Nierhaus. 1986. Analysis of the puromycin reaction. The ribosomal exclusion-principle for AcPhe-tRNA binding re-examined. Eur. J. Biochem. 161:715-721.
    • (1986) Eur. J. Biochem , vol.161 , pp. 715-721
    • Geigenmuller, U.1    Hausner, T.P.2    Nierhaus, K.H.3
  • 16
    • 0017730231 scopus 로고
    • Inhibition of ribosomal translocation by viomycin
    • Modolell, J., and D. Vazquez. 1977. Inhibition of ribosomal translocation by viomycin. Eur. J. Biochem. 81:491-497.
    • (1977) Eur. J. Biochem , vol.81 , pp. 491-497
    • Modolell, J.1    Vazquez, D.2
  • 17
    • 0023604799 scopus 로고
    • Chloramphenicol, erythromycin, carbomycin and vernamycin-B protect overlapping sites in the peptidyl transferase region of 23s-Ribosomal RNA
    • Moazed, D., and H. F. Noller. 1987. Chloramphenicol, erythromycin, carbomycin and vernamycin-B protect overlapping sites in the peptidyl transferase region of 23s-Ribosomal RNA. Biochimie. 69:879-884.
    • (1987) Biochimie , vol.69 , pp. 879-884
    • Moazed, D.1    Noller, H.F.2
  • 18
    • 0017818857 scopus 로고
    • Viomycin favors formation of 70s ribosome couples
    • Yamada, T., and K. H. Nierhaus. 1978. Viomycin favors formation of 70s ribosome couples. Mol. Gen. Genet. 161:261-265.
    • (1978) Mol. Gen. Genet , vol.161 , pp. 261-265
    • Yamada, T.1    Nierhaus, K.H.2
  • 19
    • 6344252614 scopus 로고    scopus 로고
    • Conformational changes of the small ribosomal subunit during elongation factor G-dependent tRNA-mRNA translocation
    • Peske, F., A. Savelsbergh, V. I. Katunin, M. V. Rodnina, and W. Wintermeyer. 2004. Conformational changes of the small ribosomal subunit during elongation factor G-dependent tRNA-mRNA translocation. J. Mol. Biol. 343:1183-1194.
    • (2004) J. Mol. Biol , vol.343 , pp. 1183-1194
    • Peske, F.1    Savelsbergh, A.2    Katunin, V.I.3    Rodnina, M.V.4    Wintermeyer, W.5
  • 20
  • 23
    • 0037006790 scopus 로고    scopus 로고
    • Mg2+-dependent conformational change of RNA studied by fluorescence correlation and FRET on immobilized single molecules
    • Kim, H. D., G. U. Nienhaus, T. Ha, J. W. Orr, J. R. Williamson, and S. Chu. 2002. Mg2+-dependent conformational change of RNA studied by fluorescence correlation and FRET on immobilized single molecules. Proc. Natl. Acad. Sci. USA. 99:4284-4289.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 4284-4289
    • Kim, H.D.1    Nienhaus, G.U.2    Ha, T.3    Orr, J.W.4    Williamson, J.R.5    Chu, S.6
  • 26
    • 33646007627 scopus 로고    scopus 로고
    • An RNA sensor for intracellular Mg2
    • Cromie, M. J., Y. X. Shi, T. Latifi, and E. A. Groisman. 2006. An RNA sensor for intracellular Mg2+. Cell. 125:71-84.
    • (2006) Cell , vol.125 , pp. 71-84
    • Cromie, M.J.1    Shi, Y.X.2    Latifi, T.3    Groisman, E.A.4
  • 27
    • 0034691576 scopus 로고    scopus 로고
    • A ratchet-like inter-subunit reorganization of the ribosome during translocation
    • Frank, J., and R. K. Agrawal. 2000. A ratchet-like inter-subunit reorganization of the ribosome during translocation. Nature. 406:318-322.
    • (2000) Nature , vol.406 , pp. 318-322
    • Frank, J.1    Agrawal, R.K.2
  • 28
    • 0042424707 scopus 로고    scopus 로고
    • Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy
    • Tama, F., M. Valle, J. Frank, and C. L. Brooks. 2003. Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy. Proc. Natl. Acad. Sci. USA. 100:9319-9323.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 9319-9323
    • Tama, F.1    Valle, M.2    Frank, J.3    Brooks, C.L.4
  • 29
    • 4344685227 scopus 로고    scopus 로고
    • Global ribosome motions revealed with elastic network model
    • Wang, Y. M., A. J. Rader, I. Bahar, and R. L. Jernigan. 2004. Global ribosome motions revealed with elastic network model. J. Struct. Biol. 147:302-314.
    • (2004) J. Struct. Biol , vol.147 , pp. 302-314
    • Wang, Y.M.1    Rader, A.J.2    Bahar, I.3    Jernigan, R.L.4
  • 31
    • 33947501707 scopus 로고    scopus 로고
    • Peptide bond formation destabilizes Shine-Dalgarno interaction on the ribosome
    • Uemura, S., M. Dorywalska, T. Lee, H. D. Kim, J. D. Puglisi, and S. Chu. 2007. Peptide bond formation destabilizes Shine-Dalgarno interaction on the ribosome. Nature. 446:454-457.
    • (2007) Nature , vol.446 , pp. 454-457
    • Uemura, S.1    Dorywalska, M.2    Lee, T.3    Kim, H.D.4    Puglisi, J.D.5    Chu, S.6
  • 32
    • 0034671274 scopus 로고    scopus 로고
    • Conformational changes in the ribosome induced by translational miscoding agents
    • Jerinic, O., and S. Joseph. 2000. Conformational changes in the ribosome induced by translational miscoding agents. J. Mol. Biol. 304:707-713.
    • (2000) J. Mol. Biol , vol.304 , pp. 707-713
    • Jerinic, O.1    Joseph, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.