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Volumn 426, Issue 6967, 2003, Pages 684-687

Backtracking by single RNA polymerase molecules observed at near-base-pair resolution

Author keywords

[No Author keywords available]

Indexed keywords

ASSAYS; DNA; ENZYMES; ESCHERICHIA COLI;

EID: 0346258014     PISSN: 00280836     EISSN: None     Source Type: Journal    
DOI: 10.1038/nature02191     Document Type: Article
Times cited : (321)

References (28)
  • 1
    • 0026728955 scopus 로고
    • The single-nucleotide addition cycle in transcription: A biophysical and biochemical perspective
    • Erie, D. A., Yager, T. D. & von Hippel, P. H. The single-nucleotide addition cycle in transcription: a biophysical and biochemical perspective. Annu. Rev. Biophys. Biomol. Struct. 21, 379-415 (1992).
    • (1992) Annu. Rev. Biophys. Biomol. Struct. , vol.21 , pp. 379-415
    • Erie, D.A.1    Yager, T.D.2    Von Hippel, P.H.3
  • 2
    • 0030475226 scopus 로고    scopus 로고
    • Fidelity of RNA polymerase II transcription controlled by elongation factor TFIIS
    • Jeon, C. & Agarwal, K. Fidelity of RNA polymerase II transcription controlled by elongation factor TFIIS. Proc. Natl Acad. Sci. USA 93, 13677-13682 (1996).
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 13677-13682
    • Jeon, C.1    Agarwal, K.2
  • 3
    • 0032524661 scopus 로고    scopus 로고
    • Transcriptional fidelity and proofreading by RNA polymerase II
    • Thomas, M. J., Platas, A. A. & Hawley, D. K. Transcriptional fidelity and proofreading by RNA polymerase II. Cell 93, 627-637 (1998).
    • (1998) Cell , vol.93 , pp. 627-637
    • Thomas, M.J.1    Platas, A.A.2    Hawley, D.K.3
  • 4
    • 0027761137 scopus 로고
    • Multiple RNA polymemse conformations and GreA: Control of the fidelity of transcription
    • Erie, D. A., Hajiseyedjavadi, O., Young, M. C. & von Hippel, P. H. Multiple RNA polymemse conformations and GreA: control of the fidelity of transcription. Science 262, 867-873 (1993).
    • (1993) Science , vol.262 , pp. 867-873
    • Erie, D.A.1    Hajiseyedjavadi, O.2    Young, M.C.3    Von Hippel, P.H.4
  • 6
    • 0030950638 scopus 로고    scopus 로고
    • RNA polymerase switches between inactivated and activated states by translocating back and forth along the DNA and the RNA
    • Komissarova, N. & Kashlev, M. RNA polymerase switches between inactivated and activated states by translocating back and forth along the DNA and the RNA. J. Biol. Chem. 272, 15329-15338 (1997).
    • (1997) J. Biol. Chem. , vol.272 , pp. 15329-15338
    • Komissarova, N.1    Kashlev, M.2
  • 7
    • 0031552174 scopus 로고    scopus 로고
    • The RNA-DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase
    • Nudler, E., Mustaev, A., Lukhtanov, E. & Goldfarb, A. The RNA-DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase. Cell 89, 33-41 (1997).
    • (1997) Cell , vol.89 , pp. 33-41
    • Nudler, E.1    Mustaev, A.2    Lukhtanov, E.3    Goldfarb, A.4
  • 8
    • 0034507953 scopus 로고    scopus 로고
    • Function of transcription cleavage factors GreA and GreB at a regulatory pause site
    • Marr, M. T. & Roberts, J. W. Function of transcription cleavage factors GreA and GreB at a regulatory pause site. Mol. Cell 6, 1275-1285 (2000).
    • (2000) Mol. Cell , vol.6 , pp. 1275-1285
    • Marr, M.T.1    Roberts, J.W.2
  • 9
    • 0031059249 scopus 로고    scopus 로고
    • Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3′ end of the RNA intact and extruded
    • Komissarova, N. & Kashlev, M. Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3′ end of the RNA intact and extruded. Proc. Natl Acad. Sci. USA 94, 1755-1760 (1997).
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 1755-1760
    • Komissarova, N.1    Kashlev, M.2
  • 10
    • 0030584091 scopus 로고    scopus 로고
    • Promoter proximal sequences modulate RNA polymerase II elongation by a novel mechanism
    • Reeder, T. C. & Hawley, D. K. Promoter proximal sequences modulate RNA polymerase II elongation by a novel mechanism. Cell 87, 767-777 (1996).
    • (1996) Cell , vol.87 , pp. 767-777
    • Reeder, T.C.1    Hawley, D.K.2
  • 11
    • 0033588105 scopus 로고    scopus 로고
    • Structural characterization of RNA polymerase II complexes arrested by a cyclobutane pyrimidine dimer in the transcribed strand of template DNA
    • Tornaletti, S., Reines, D. & Hanawalt, P. C. Structural characterization of RNA polymerase II complexes arrested by a cyclobutane pyrimidine dimer in the transcribed strand of template DNA. J. Biol. Chem. 274, 24124-24130 (1999).
    • (1999) J. Biol. Chem. , vol.274 , pp. 24124-24130
    • Tornaletti, S.1    Reines, D.2    Hanawalt, P.C.3
  • 12
    • 0345047725 scopus 로고    scopus 로고
    • Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking
    • Neuman, K. C., Abbondanzieri, E. A., Landick, R., Gelles, J. & Block, S. M. Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking. Cell 115, 437-447 (2003).
    • (2003) Cell , vol.115 , pp. 437-447
    • Neuman, K.C.1    Abbondanzieri, E.A.2    Landick, R.3    Gelles, J.4    Block, S.M.5
  • 13
    • 0037015022 scopus 로고    scopus 로고
    • Using mechanical force to probe the mechanism of pausing and arrest during continuous elongation by Escherichia coli RNA polymerase
    • Forde, N. R., Izhaky, D., Woodcock, G. R., Wuite, G. J. & Bustamante, C. Using mechanical force to probe the mechanism of pausing and arrest during continuous elongation by Escherichia coli RNA polymerase. Proc. Natl Acad. Sci. USA 99, 11682-11687 (2002).
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 11682-11687
    • Forde, N.R.1    Izhaky, D.2    Woodcock, G.R.3    Wuite, G.J.4    Bustamante, C.5
  • 14
    • 0025867008 scopus 로고
    • Transcription by single molecules of RNA polymerase observed by light microscopy
    • Schafer, D. A., Gelles, J., Sheetz, M. P. & Landick, R. Transcription by single molecules of RNA polymerase observed by light microscopy. Nature 352, 444-448 (1991).
    • (1991) Nature , vol.352 , pp. 444-448
    • Schafer, D.A.1    Gelles, J.2    Sheetz, M.P.3    Landick, R.4
  • 15
    • 0032582494 scopus 로고    scopus 로고
    • Force and velocity measured for single molecules of RNA polymerase
    • Wang, M. D. et al. Force and velocity measured for single molecules of RNA polymerase. Science 282, 902-907 (1998).
    • (1998) Science , vol.282 , pp. 902-907
    • Wang, M.D.1
  • 16
    • 0028143652 scopus 로고
    • Tethered particle motion method for studying transcript elongation by a single RNA polymerase molecule
    • Yin, H., Landick, R. & Gelles, J. Tethered particle motion method for studying transcript elongation by a single RNA polymerase molecule. Biophys. J. 67, 2468-2478 (1994).
    • (1994) Biophys. J. , vol.67 , pp. 2468-2478
    • Yin, H.1    Landick, R.2    Gelles, J.3
  • 17
    • 0037109057 scopus 로고    scopus 로고
    • Single molecule analysis of RNA polymerase elongation reveals uniform kinetic behavior
    • Adelman, K. et al. Single molecule analysis of RNA polymerase elongation reveals uniform kinetic behavior. Proc. Natl Acad. Sci. USA 99, 13538-13543 (2002).
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 13538-13543
    • Adelman, K.1
  • 18
    • 0033535556 scopus 로고    scopus 로고
    • The motor protein myosin-I produces its working stroke in two steps
    • Veigel, C. et al. The motor protein myosin-I produces its working stroke in two steps. Nature 398, 530-533 (1999).
    • (1999) Nature , vol.398 , pp. 530-533
    • Veigel, C.1
  • 20
    • 0035069744 scopus 로고    scopus 로고
    • Substeps within the 8-nm step of the ATPase cycle of single kinesin molecules
    • Nishiyama, M., Muto, E., Inoue, Y., Yanagida, T. & Higuchi, H. Substeps within the 8-nm step of the ATPase cycle of single kinesin molecules. Nature Cell Biol. 3, 425-428 (2001).
    • (2001) Nature Cell Biol. , vol.3 , pp. 425-428
    • Nishiyama, M.1    Muto, E.2    Inoue, Y.3    Yanagida, T.4    Higuchi, H.5
  • 21
    • 0022423486 scopus 로고
    • Base-base mismatches. Thermodynamics of double helix formation for dCA3XA3G+dCT3YT3G (X, Y=A,C,G,T)
    • Aboul-ela, F., Koh, D., Tinoco, I. Jr & Martin, F. H. Base-base mismatches. Thermodynamics of double helix formation for dCA3XA3G+dCT3YT3G (X, Y=A,C,G,T). Nucleic Acids Res. 13, 4811-4824 (1985).
    • (1985) Nucleic Acids Res. , vol.13 , pp. 4811-4824
    • Aboul-Ela, F.1    Koh, D.2    Tinoco Jr., I.3    Martin, F.H.4
  • 22
    • 0022429804 scopus 로고
    • Base pairing involving deoxyinosine: Implications for probe design
    • Martin, F. H., Castro, M. M., Aboul-ela, F. & Tinoco, I. Jr Base pairing involving deoxyinosine: implications for probe design. Nucleic Acids Res. 13, 8927-8938 (1985).
    • (1985) Nucleic Acids Res. , vol.13 , pp. 8927-8938
    • Martin, F.H.1    Castro, M.M.2    Aboul-Ela, F.3    Tinoco Jr., I.4
  • 23
    • 0027536870 scopus 로고
    • Transcript cleavage factors from E. coli
    • Borukhov, S., Sagitov, V. & Goldfarb, A. Transcript cleavage factors from E. coli. Cell 72, 459-466 (1993).
    • (1993) Cell , vol.72 , pp. 459-466
    • Borukhov, S.1    Sagitov, V.2    Goldfarb, A.3
  • 24
    • 0037832404 scopus 로고    scopus 로고
    • Myosin V walks hand-over-hand: Single fluorophore imaging with 1.5-nm localization
    • Yildiz, A. et al. Myosin V walks hand-over-hand: single fluorophore imaging with 1.5-nm localization. Science 300, 2061-2065 (2003).
    • (2003) Science , vol.300 , pp. 2061-2065
    • Yildiz, A.1
  • 25
    • 0027930269 scopus 로고
    • GreA-induced transcript cleavage in transcription complexes containing Escherichia coli RNA polymerase is controlled by multiple factors, including nascent transcript location and structure
    • Feng, G. H., Lee, D. N., Wang, D., Chan, C. L. & Landick, R. GreA-induced transcript cleavage in transcription complexes containing Escherichia coli RNA polymerase is controlled by multiple factors, including nascent transcript location and structure. J. Biol. Chem. 269, 22282-22294 (1994).
    • (1994) J. Biol. Chem. , vol.269 , pp. 22282-22294
    • Feng, G.H.1    Lee, D.N.2    Wang, D.3    Chan, C.L.4    Landick, R.5
  • 26
    • 0036284131 scopus 로고    scopus 로고
    • An automated two-dimensional optical force clamp for single molecule studies
    • Lang, M. J., Asbury, C. L., Shaevitz, J. W. & Block, S. M. An automated two-dimensional optical force clamp for single molecule studies. Biophys. J. 83, 491-501 (2002).
    • (2002) Biophys. J. , vol.83 , pp. 491-501
    • Lang, M.J.1    Asbury, C.L.2    Shaevitz, J.W.3    Block, S.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.