메뉴 건너뛰기




Volumn 106, Issue 37, 2009, Pages 15702-15707

Allosteric collaboration between elongation factor G and the ribosomal L1 stalk directs tRNA movements during translation

Author keywords

Dynamics; Ribosome; Single molecule FRET; Translocation

Indexed keywords

ELONGATION FACTOR G; RIBOSOMAL PROTEIN L1; TRANSFER RNA;

EID: 70349470607     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0908077106     Document Type: Article
Times cited : (120)

References (38)
  • 1
    • 33747886005 scopus 로고    scopus 로고
    • The ribosome's response to codon-anticodon mismatches
    • DOI 10.1016/j.biochi.2006.04.013, PII S0300908406000630, The Ribosomal Decoding Site and Antibiotics
    • Daviter T, Gromadski KB, Rodnina MV (2006) The ribosome's response to codon- anticodon mismatches. Biochimie 88:1001-1011. (Pubitemid 44291874)
    • (2006) Biochimie , vol.88 , Issue.8 , pp. 1001-1011
    • Daviter, T.1    Gromadski, K.B.2    Rodnina, M.V.3
  • 2
    • 34247589630 scopus 로고    scopus 로고
    • The ribosomal peptidyl transferase
    • Beringer M, Rodnina MV (2007) The ribosomal peptidyl transferase. Mol Cell 26:311-321.
    • (2007) Mol Cell , vol.26 , pp. 311-321
    • Beringer, M.1    Rodnina, M.V.2
  • 3
    • 65249132345 scopus 로고    scopus 로고
    • Ribosomal translocation: One step closer to the molecular mechanism
    • Shoji S, Walker SE, Fredrick K (2009) Ribosomal translocation: One step closer to the molecular mechanism. ACS Chem Biol 4:93-107.
    • (2009) ACS Chem Biol , vol.4 , pp. 93-107
    • Shoji, S.1    Walker, S.E.2    Fredrick, K.3
  • 4
    • 38049178477 scopus 로고    scopus 로고
    • The process of mRNA-tRNA translocation
    • Frank J, et al. (2007) The process of mRNA-tRNA translocation. Proc Natl Acad Sci USA 104:19671-19678.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 19671-19678
    • Frank, J.1
  • 5
    • 42949139492 scopus 로고    scopus 로고
    • The mechanics of translocation: A molecular "spring-andratchet" system
    • Moran SJ, et al. (2008) The mechanics of translocation: A molecular "spring-andratchet" system. Structure (London) 16:664-672.
    • (2008) Structure (London) , vol.16 , pp. 664-672
    • Moran, S.J.1
  • 6
    • 0024458904 scopus 로고
    • Intermediate states in the movement of transferRNAin the ribosome
    • MoazedD, Noller HF (1989) Intermediate states in the movement of transferRNAin the ribosome. Nature 342:142-148.
    • (1989) Nature , vol.342 , pp. 142-148
    • Moazed, D.1    Noller, H.F.2
  • 7
    • 54049116765 scopus 로고    scopus 로고
    • Visualization of the hybrid state of tRNA binding promoted by spontaneous ratcheting of the ribosome
    • Agirrezabala X, et al. (2008) Visualization of the hybrid state of tRNA binding promoted by spontaneous ratcheting of the ribosome. Mol Cell 32:190-197.
    • (2008) Mol Cell , vol.32 , pp. 190-197
    • Agirrezabala, X.1
  • 8
    • 55949134736 scopus 로고    scopus 로고
    • Structure of ratcheted ribosomes with tRNAs in hybrid states
    • Julian P, et al. (2008) Structure of ratcheted ribosomes with tRNAs in hybrid states. Proc Natl Acad Sci USA 105:16924-16927.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 16924-16927
    • Julian, P.1
  • 9
    • 4444313551 scopus 로고    scopus 로고
    • TRNA dynamics on the ribosome during translation
    • Blanchard SC, et al. (2004) tRNA dynamics on the ribosome during translation. Proc Natl Acad Sci USA 101:12893-12898.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 12893-12898
    • Blanchard, S.C.1
  • 10
    • 36549020733 scopus 로고    scopus 로고
    • Fluctuations of transfer RNAs between classical and hybrid states
    • Kim HD, Puglisi JD, Chu S (2007) Fluctuations of transfer RNAs between classical and hybrid states. Biophys J 93:3575-3582.
    • (2007) Biophys J , vol.93 , pp. 3575-3582
    • Kim, H.D.1    Puglisi, J.D.2    Chu, S.3
  • 11
    • 34250220008 scopus 로고    scopus 로고
    • Observation of intersubunit movement of the ribosome in solution using FRET
    • Ermolenko DN, et al. (2007) Observation of intersubunit movement of the ribosome in solution using FRET. J Mol Biol 370:530-540.
    • (2007) J Mol Biol , vol.370 , pp. 530-540
    • Ermolenko, D.N.1
  • 12
    • 33847051154 scopus 로고    scopus 로고
    • Identification of Two Distinct Hybrid State Intermediates on the Ribosome
    • DOI 10.1016/j.molcel.2007.01.022, PII S1097276507000457
    • Munro JB, Altman RB, O'Connor N, Blanchard SC (2007) Identification of two distinct hybrid state intermediates on the ribosome. Mol Cell 25:505-517. (Pubitemid 46274447)
    • (2007) Molecular Cell , vol.25 , Issue.4 , pp. 505-517
    • Munro, J.B.1    Altman, R.B.2    O'Connor, N.3    Blanchard, S.C.4
  • 13
    • 42949126723 scopus 로고    scopus 로고
    • Coupling of ribosomal L1 stalk and tRNA dynamics during translation elongation
    • Fei J, Kosuri P, MacDougall DD, Gonzalez RL, Jr (2008) Coupling of ribosomal L1 stalk and tRNA dynamics during translation elongation. Mol Cell 30:348-359.
    • (2008) Mol Cell , vol.30 , pp. 348-359
    • Fei, J.1    Kosuri, P.2    MacDougall, D.D.3    Gonzalez Jr., R.L.4
  • 14
    • 44449125068 scopus 로고    scopus 로고
    • Spontaneous intersubunit rotation in single ribosomes
    • Cornish PV, Ermolenko DN, Noller HF, Ha T (2008) Spontaneous intersubunit rotation in single ribosomes. Mol Cell 30:578-588.
    • (2008) Mol Cell , vol.30 , pp. 578-588
    • Cornish, P.V.1    Ermolenko, D.N.2    Noller, H.F.3    Ha, T.4
  • 15
    • 62449216538 scopus 로고    scopus 로고
    • Following movement of the L1 stalk between three functional states in single ribosomes
    • Cornish PV, et al. (2009) Following movement of the L1 stalk between three functional states in single ribosomes. Proc Natl Acad Sci USA 106:2571-2576.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 2571-2576
    • Cornish, P.V.1
  • 16
    • 0024252185 scopus 로고
    • Extension inhibition analysis of translation initiation complexes
    • Hartz D, McPheeters DS, Traut R, Gold L (1988) Extension inhibition analysis of translation initiation complexes. Methods Enzymol 164:419-425.
    • (1988) Methods Enzymol , vol.164 , pp. 419-425
    • Hartz, D.1    McPheeters, D.S.2    Traut, R.3    Gold, L.4
  • 17
    • 0036282055 scopus 로고    scopus 로고
    • Accurate translocation of mRNA by the ribosome requires a peptidyl group or its analog on the tRNA moving into the 30S P site
    • DOI 10.1016/S1097-2765(02)00523-3
    • Fredrick K, Noller HF (2002) Accurate translocation of mRNA by the ribosome requires a peptidyl group or its analog on the tRNA moving into the 30S P site. Mol Cell 9:1125-1131. (Pubitemid 34626680)
    • (2002) Molecular Cell , vol.9 , Issue.5 , pp. 1125-1131
    • Fredrick, K.1    Noller, H.F.2
  • 18
    • 68249151083 scopus 로고    scopus 로고
    • Translation factors direct intrinsic ribosome dynamics during termination and ribosome recycling
    • Sternberg SH, et al. Translation factors direct intrinsic ribosome dynamics during termination and ribosome recycling. Nat Struct Mol Biol 16:861-868.
    • Nat Struct Mol Biol , vol.16 , pp. 861-868
    • Sternberg, S.H.1
  • 19
    • 0029764358 scopus 로고    scopus 로고
    • Microspectroscopic imaging tracks the intracellular processing of a signal transduction protein: Fluorescent-labeled protein kinase C beta I
    • Bastiaens PI, Jovin TM (1996) Microspectroscopic imaging tracks the intracellular processing of a signal transduction protein: Fluorescent-labeled protein kinase C beta I. Proc Natl Acad Sci USA 93:8407-8412.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 8407-8412
    • Bastiaens, P.I.1    Jovin, T.M.2
  • 20
    • 4143071283 scopus 로고    scopus 로고
    • Single-molecule three-color FRET
    • Hohng S, Joo C, Ha T (2004) Single-molecule three-color FRET. Biophys J 87:1328-1337.
    • (2004) Biophys J , vol.87 , pp. 1328-1337
    • Hohng, S.1    Joo, C.2    Ha, T.3
  • 21
    • 0242500997 scopus 로고    scopus 로고
    • Exploration of the transition state for tertiary structure formation between an RNA helix and a large structured RNA
    • Bartley LE, et al. (2003) Exploration of the transition state for tertiary structure formation between an RNA helix and a large structured RNA. J Mol Biol 328:1011-1026.
    • (2003) J Mol Biol , vol.328 , pp. 1011-1026
    • Bartley, L.E.1
  • 22
    • 33644798018 scopus 로고    scopus 로고
    • The hybrid state of tRNA binding is an authentic translation elongation intermediate
    • DOI 10.1038/nsmb1060, PII N1060
    • Dorner S, Brunelle JL, Sharma D, Green R (2006) The hybrid state of tRNA binding is an authentic translation elongation intermediate. Nat Struct Mol Biol 13:234-241. (Pubitemid 43348509)
    • (2006) Nature Structural and Molecular Biology , vol.13 , Issue.3 , pp. 234-241
    • Dorner, S.1    Brunelle, J.L.2    Sharma, D.3    Green, R.4
  • 23
    • 0037459218 scopus 로고    scopus 로고
    • Rapid kinetic analysis of EF-G-dependent mRNA translocation in the ribosome
    • Studer SM, Feinberg JS, Joseph S (2003) Rapid kinetic analysis of EF-G-dependent mRNA translocation in the ribosome. J Mol Biol 327:369-381.
    • (2003) J Mol Biol , vol.327 , pp. 369-381
    • Studer, S.M.1    Feinberg, J.S.2    Joseph, S.3
  • 24
    • 0025280137 scopus 로고
    • The allosteric three-site model for the ribosomal elongation cycle: Features and future
    • Nierhaus KH (1990) The allosteric three-site model for the ribosomal elongation cycle: Features and future. Biochemistry 29:4997-5008.
    • (1990) Biochemistry , vol.29 , pp. 4997-5008
    • Nierhaus, K.H.1
  • 26
    • 33845631049 scopus 로고    scopus 로고
    • Reverse translocation of tRNA in the ribosome
    • Shoji S, Walker SE, FredrickK(2006) Reverse translocation of tRNA in the ribosome. Mol Cell 24:931-942.
    • (2006) Mol Cell , vol.24 , pp. 931-942
    • Shoji, S.1    Walker, S.E.2    Fredrick, K.3
  • 27
    • 34247231999 scopus 로고    scopus 로고
    • Spontaneous reverse movement of mRNA-bound tRNA through the ribosome
    • Konevega AL, et al. (2007) Spontaneous reverse movement of mRNA-bound tRNA through the ribosome. Nat Struct Mol Biol 14:318-324.
    • (2007) Nat Struct Mol Biol , vol.14 , pp. 318-324
    • Konevega, A.L.1
  • 28
    • 0032498266 scopus 로고    scopus 로고
    • Mapping the position of translational elongation factor EF-G in the ribosome by directed hydroxyl radical probing
    • Wilson KS, Noller HF (1998) Mapping the position of translational elongation factor EF-G in the ribosome by directed hydroxyl radical probing. Cell 92:131-139.
    • (1998) Cell , vol.92 , pp. 131-139
    • Wilson, K.S.1    Noller, H.F.2
  • 30
    • 0037963475 scopus 로고    scopus 로고
    • Locking and unlocking of ribosomal motions
    • Valle M, et al. (2003) Locking and unlocking of ribosomal motions. Cell 114:123-134.
    • (2003) Cell , vol.114 , pp. 123-134
    • Valle, M.1
  • 31
    • 33847358277 scopus 로고    scopus 로고
    • Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors
    • Connell SR, et al. (2007) Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors. Mol Cell 25:751-764.
    • (2007) Mol Cell , vol.25 , pp. 751-764
    • Connell, S.R.1
  • 32
    • 1842576803 scopus 로고    scopus 로고
    • Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation
    • Spahn CM, et al. (2004) Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation. EMBO J 23:1008-1019.
    • (2004) EMBO J , vol.23 , pp. 1008-1019
    • Spahn, C.M.1
  • 33
    • 0035805213 scopus 로고    scopus 로고
    • Crystal structure of the ribosome at 5.5 a resolution
    • Yusupov MM, et al. (2001) Crystal structure of the ribosome at 5.5 A resolution. Science 292:883-896.
    • (2001) Science , vol.292 , pp. 883-896
    • Yusupov, M.M.1
  • 34
    • 33748582906 scopus 로고    scopus 로고
    • Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements
    • DOI 10.1016/j.cell.2006.08.032, PII S0092867406011469
    • Korostelev A, Trakhanov S, Laurberg M, Noller HF (2006) Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements. Cell 126:1065-1077. (Pubitemid 44380300)
    • (2006) Cell , vol.126 , Issue.6 , pp. 1065-1077
    • Korostelev, A.1    Trakhanov, S.2    Laurberg, M.3    Noller, H.F.4
  • 38
    • 0033762347 scopus 로고    scopus 로고
    • Energetic contribution of tRNA hybrid state formation to translocation catalysis on the ribosome
    • Semenkov YP, Rodnina MV, Wintermeyer W (2000) Energetic contribution of tRNA hybrid state formation to translocation catalysis on the ribosome. Nat Struct Biol 7:1027-1031.
    • (2000) Nat Struct Biol , vol.7 , pp. 1027-1031
    • Semenkov, Y.P.1    Rodnina, M.V.2    Wintermeyer, W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.