-
1
-
-
0033823060
-
The renaissance of fluorescence resonance energy transfer
-
Selvin, P. R. 2000. The renaissance of fluorescence resonance energy transfer. Nat. Struct. Biol. 7:730-734.
-
(2000)
Nat. Struct. Biol
, vol.7
, pp. 730-734
-
-
Selvin, P.R.1
-
2
-
-
0036669824
-
Measuring protein conformational changes by FRET/LRET
-
Heyduk, T. 2002. Measuring protein conformational changes by FRET/LRET. Curr. Opin. Biotechnol. 13:292-296.
-
(2002)
Curr. Opin. Biotechnol
, vol.13
, pp. 292-296
-
-
Heyduk, T.1
-
3
-
-
0026687952
-
Fluorescence resonance energy transfer and nucleic acids
-
Clegg, R. M. 1992. Fluorescence resonance energy transfer and nucleic acids. Methods Enzymol. 211:353-388.
-
(1992)
Methods Enzymol
, vol.211
, pp. 353-388
-
-
Clegg, R.M.1
-
4
-
-
0033548686
-
Fluorescence spectroscopy of single biomolecules
-
Weiss, S. 1999. Fluorescence spectroscopy of single biomolecules. Science. 283:1676-1683.
-
(1999)
Science
, vol.283
, pp. 1676-1683
-
-
Weiss, S.1
-
6
-
-
1842583976
-
Structural dynamics and processing of nucleic acids revealed by single-molecule spectroscopy
-
Ha, T. 2004. Structural dynamics and processing of nucleic acids revealed by single-molecule spectroscopy. Biochemistry. 43:4055-4063.
-
(2004)
Biochemistry
, vol.43
, pp. 4055-4063
-
-
Ha, T.1
-
7
-
-
0034697840
-
Double fluorescence resonance energy transfer to explore multicomponent binding interactions: A case study of DNA mismatches
-
Horsey, I., W. S. Furey, J. G. Harrison, M. A. Osborne, and S. Balasubramanian. 2000. Double fluorescence resonance energy transfer to explore multicomponent binding interactions: a case study of DNA mismatches. Chem. Commun.1043-1044.
-
(2000)
Chem. Commun
, pp. 1043-1044
-
-
Horsey, I.1
Furey, W.S.2
Harrison, J.G.3
Osborne, M.A.4
Balasubramanian, S.5
-
8
-
-
0141886922
-
Self-assembled nanoscale biosensors based on quantum dot FRET donors
-
Medintz, I. L., A. R. Clapp, H. Mattoussi, E. R. Goldman, B. Fisher, and J. M. Mauro. 2003. Self-assembled nanoscale biosensors based on quantum dot FRET donors. Nat. Mater. 2:630-638.
-
(2003)
Nat. Mater
, vol.2
, pp. 630-638
-
-
Medintz, I.L.1
Clapp, A.R.2
Mattoussi, H.3
Goldman, E.R.4
Fisher, B.5
Mauro, J.M.6
-
9
-
-
15744403602
-
Three-chromophore FRET microscopy to analyze multiprotein interactions in living cells
-
Galperin, E., V. Verkhusha, and A. Sorkin. 2004. Three-chromophore FRET microscopy to analyze multiprotein interactions in living cells. Nat. Methods. 1:209-217.
-
(2004)
Nat. Methods
, vol.1
, pp. 209-217
-
-
Galperin, E.1
Verkhusha, V.2
Sorkin, A.3
-
11
-
-
2542601493
-
A three-fluorophore FRET assay for high-throughput screening of small-molecule inhibitors of ribosome assembly
-
Klostermeier, D., P. Sears, C. H. Wong, D. P. Millar, and J. R. Williamson. 2004. A three-fluorophore FRET assay for high-throughput screening of small-molecule inhibitors of ribosome assembly. Nucleic Acids Res. 32:2707-2715.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 2707-2715
-
-
Klostermeier, D.1
Sears, P.2
Wong, C.H.3
Millar, D.P.4
Williamson, J.R.5
-
13
-
-
0037176245
-
FRET study of a trifluorophom-labeled DNAzyme
-
Liu, J. W., and Y. Lu. 2002. FRET study of a trifluorophom-labeled DNAzyme. J. Am. Chem. Soc. 124:15208-15216.
-
(2002)
J. Am. Chem. Soc
, vol.124
, pp. 15208-15216
-
-
Liu, J.W.1
Lu, Y.2
-
14
-
-
2542541215
-
Multistep energy transfer in single molecular photonic wires
-
Heilemann, M., P. Tinnefeld, G. S. Mosteiro, M. G. Parajo, N. F. Van Hulst, and M. Sauer. 2004. Multistep energy transfer in single molecular photonic wires. J. Am. Chem. Soc. 126:6514-6515.
-
(2004)
J. Am. Chem. Soc
, vol.126
, pp. 6514-6515
-
-
Heilemann, M.1
Tinnefeld, P.2
Mosteiro, G.S.3
Parajo, M.G.4
Van Hulst, N.F.5
Sauer, M.6
-
15
-
-
0041810129
-
Triple FRET: A tool for studying long-range molecular interactions
-
Haustein, E., M. Jahnz, and P. Schwille. 2003. Triple FRET: a tool for studying long-range molecular interactions. ChemPhysChem. 4:745-748.
-
(2003)
ChemPhysChem
, vol.4
, pp. 745-748
-
-
Haustein, E.1
Jahnz, M.2
Schwille, P.3
-
16
-
-
3042751854
-
Nanometer-scale fluorescence resonance optical waveguides
-
Vyawahare, S., S. Eyal, K. D. Mathews, and S. R. Quake. 2004. Nanometer-scale fluorescence resonance optical waveguides. Nano Lett. 4:1035-1039.
-
(2004)
Nano Lett
, vol.4
, pp. 1035-1039
-
-
Vyawahare, S.1
Eyal, S.2
Mathews, K.D.3
Quake, S.R.4
-
17
-
-
0036432939
-
Cascade energy transfer in a conformationally mobile multichromophoric dendrimer
-
Serin, J. M., D. W. Brousmiche, and J. M. J. Frechet. 2002. Cascade energy transfer in a conformationally mobile multichromophoric dendrimer. Chem. Commun.2605-2607.
-
(2002)
Chem. Commun
, pp. 2605-2607
-
-
Serin, J.M.1
Brousmiche, D.W.2
Frechet, J.M.J.3
-
18
-
-
0035956566
-
Triple fluorescence energy transfer in covalently trichromophore-labeled DNA
-
Tong, A. K., S. Jockusch, Z. M. Li, H. R. Zhu, D. L. Akins, N. J. Turro, and J. Y. Ju. 2001. Triple fluorescence energy transfer in covalently trichromophore-labeled DNA. J. Am. Chem. Soc. 123:12923-12924.
-
(2001)
J. Am. Chem. Soc
, vol.123
, pp. 12923-12924
-
-
Tong, A.K.1
Jockusch, S.2
Li, Z.M.3
Zhu, H.R.4
Akins, D.L.5
Turro, N.J.6
Ju, J.Y.7
-
19
-
-
4143071283
-
Single-molecule three-color FRET
-
Hohng, S., C. Joo, and T. Ha. 2004. Single-molecule three-color FRET. Biophys. J. 87:1328-1337.
-
(2004)
Biophys. J
, vol.87
, pp. 1328-1337
-
-
Hohng, S.1
Joo, C.2
Ha, T.3
-
20
-
-
13444291091
-
Three-color single-molecule fluorescence resonance energy transfer
-
Clamme, J. P., and A. A. Deniz. 2005. Three-color single-molecule fluorescence resonance energy transfer. ChemPhysChem. 6:74-77.
-
(2005)
ChemPhysChem
, vol.6
, pp. 74-77
-
-
Clamme, J.P.1
Deniz, A.A.2
-
21
-
-
0347319178
-
Triple-color coincidence analysis: One step further in following higher order molecular complex formation
-
Heinze, K. G., M. Jahnz, and P. Schwille. 2004. Triple-color coincidence analysis: one step further in following higher order molecular complex formation. Biophys. J. 86:506-516.
-
(2004)
Biophys. J
, vol.86
, pp. 506-516
-
-
Heinze, K.G.1
Jahnz, M.2
Schwille, P.3
-
22
-
-
0033616580
-
Single-pair fluorescence resonance energy transfer on freely diffusing molecules: Observation of Forster distance dependence and subpopulations
-
Deniz, A. A., M. Dahan, J. R. Grunwell, T. Ha, A. E. Faulhaber, D. S. Chemla, S. Weiss, and P. G. Schultz. 1999. Single-pair fluorescence resonance energy transfer on freely diffusing molecules: observation of Forster distance dependence and subpopulations. Proc. Natl. Acad. Sci. USA. 96:3670-3675.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 3670-3675
-
-
Deniz, A.A.1
Dahan, M.2
Grunwell, J.R.3
Ha, T.4
Faulhaber, A.E.5
Chemla, D.S.6
Weiss, S.7
Schultz, P.G.8
-
23
-
-
2942650138
-
Fluorescence-aided molecule sorting: Analysis of structure and interactions by alternating-laser excitation of single molecules
-
Kapanidis, A. N., N. K. Lee, T. A. Laurence, S. Doose, E. Margeat, and S. Weiss. 2004. Fluorescence-aided molecule sorting: analysis of structure and interactions by alternating-laser excitation of single molecules. Proc. Natl. Acad. Sci. USA. 101:8936-8941.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 8936-8941
-
-
Kapanidis, A.N.1
Lee, N.K.2
Laurence, T.A.3
Doose, S.4
Margeat, E.5
Weiss, S.6
-
24
-
-
22144492905
-
Accurate FRET measurements within single diffusing biomolecules using alternating-laser excitation
-
Lee, N. K., A. N. Kapanidis, Y. Wang, X. Michalet, J. Mukhopadhyay, R. H. Ebright, and S. Weiss. 2005. Accurate FRET measurements within single diffusing biomolecules using alternating-laser excitation. Biophys. J. 88:2939-2953.
-
(2005)
Biophys. J
, vol.88
, pp. 2939-2953
-
-
Lee, N.K.1
Kapanidis, A.N.2
Wang, Y.3
Michalet, X.4
Mukhopadhyay, J.5
Ebright, R.H.6
Weiss, S.7
-
25
-
-
23744455796
-
Alternating-laser excitation of single molecules
-
Kapanidis, A. N., T. A. Laurence, N. K. Lee, E. Margeat, X. Kong, and S. Weiss. 2005. Alternating-laser excitation of single molecules. Acc. Chem. Res. 38:523-533.
-
(2005)
Acc. Chem. Res
, vol.38
, pp. 523-533
-
-
Kapanidis, A.N.1
Laurence, T.A.2
Lee, N.K.3
Margeat, E.4
Kong, X.5
Weiss, S.6
-
26
-
-
0035943446
-
Translocation of σ(70) with RNA polymerase during transcription: Fluorescence resonance energy transfer assay for movement relative to DNA
-
Mukhopadhyay, J., A. N. Kapanidis, V. Mekler, E. Kortkhonjia, Y. W. Ebright, and R. H. Ebright. 2001. Translocation of σ(70) with RNA polymerase during transcription: Fluorescence resonance energy transfer assay for movement relative to DNA. Cell. 106:453-463.
-
(2001)
Cell
, vol.106
, pp. 453-463
-
-
Mukhopadhyay, J.1
Kapanidis, A.N.2
Mekler, V.3
Kortkhonjia, E.4
Ebright, Y.W.5
Ebright, R.H.6
-
27
-
-
0032502311
-
Conformation and DNA binding properties of a single-stranded DNA binding region of σ(70) subunit from Escherichia coli RNA polymerase are modulated by an interaction with the core enzyme
-
Callaci, S., and T. Heyduk. 1998. Conformation and DNA binding properties of a single-stranded DNA binding region of σ(70) subunit from Escherichia coli RNA polymerase are modulated by an interaction with the core enzyme. Biochemistry. 37:3312-3320.
-
(1998)
Biochemistry
, vol.37
, pp. 3312-3320
-
-
Callaci, S.1
Heyduk, T.2
-
28
-
-
18344371347
-
Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex
-
Mekler, V., E. Kortkhonjia, J. Mukhopadhyay, J. Knight, A. Revyakin, A. N. Kapanidis, W. Niu, Y. W. Ebright, R. Levy, and R. H. Ebright. 2002. Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex. Cell. 108:599-614.
-
(2002)
Cell
, vol.108
, pp. 599-614
-
-
Mekler, V.1
Kortkhonjia, E.2
Mukhopadhyay, J.3
Knight, J.4
Revyakin, A.5
Kapanidis, A.N.6
Niu, W.7
Ebright, Y.W.8
Levy, R.9
Ebright, R.H.10
-
29
-
-
27644579628
-
Retention of transcription initiation factor σ70 in transcription elongation: Single-molecule analysis
-
Kapanidis, A. N., E. Margeat, T. A. Laurence, S. Doose, S. O. Ho, J. Mukhopadhyay, E. Kortkhonjia, V. Mekler, R. H. Ebright, and S. Weiss. 2005. Retention of transcription initiation factor σ70 in transcription elongation: single-molecule analysis. Mol. Cell. 20:347-356.
-
(2005)
Mol. Cell
, vol.20
, pp. 347-356
-
-
Kapanidis, A.N.1
Margeat, E.2
Laurence, T.A.3
Doose, S.4
Ho, S.O.5
Mukhopadhyay, J.6
Kortkhonjia, E.7
Mekler, V.8
Ebright, R.H.9
Weiss, S.10
-
30
-
-
4444313551
-
tRNA dynamics on the ribosome during translation
-
Blanchard, S. C., H. D. Kim, R. L. Gonzalez, J. D. Puglisi, and S. Chu. 2004. tRNA dynamics on the ribosome during translation. Proc. Natl. Acad. Sci. USA. 101:12893-12898.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 12893-12898
-
-
Blanchard, S.C.1
Kim, H.D.2
Gonzalez, R.L.3
Puglisi, J.D.4
Chu, S.5
-
31
-
-
0033514435
-
Single-molecule fluorescence spectroscopy of enzyme conformational dynamics and cleavage mechanism
-
Ha, T. J., A. Y. Ting, J. Liang, W. B. Caldwell, A. A. Deniz, D. S. Chemla, P. G. Schultz, and S. Weiss. 1999. Single-molecule fluorescence spectroscopy of enzyme conformational dynamics and cleavage mechanism. Proc. Natl. Acad. Sci. USA. 96:893-898.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 893-898
-
-
Ha, T.J.1
Ting, A.Y.2
Liang, J.3
Caldwell, W.B.4
Deniz, A.A.5
Chemla, D.S.6
Schultz, P.G.7
Weiss, S.8
-
32
-
-
0037452580
-
Multiparameter single-molecule fluorescence spectroscopy reveals heterogeneity of HIV-1 reverse transcriptase: Primer/template complexes
-
Rothwell, P. J., S. Berger, O. Kensch, S. Felekyan, M. Antonik, B. M. Wohrl, T. Restle, R. S. Goody, and C. A. M. Seidel. 2003. Multiparameter single-molecule fluorescence spectroscopy reveals heterogeneity of HIV-1 reverse transcriptase: primer/template complexes. Proc. Natl. Acad. Sci. USA. 100:1655-1660.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 1655-1660
-
-
Rothwell, P.J.1
Berger, S.2
Kensch, O.3
Felekyan, S.4
Antonik, M.5
Wohrl, B.M.6
Restle, T.7
Goody, R.S.8
Seidel, C.A.M.9
-
33
-
-
0344304471
-
Studies on the structure and dynamics of the human telomeric G quadruplex by single-molecule fluorescence resonance energy transfer
-
Ying, L. M., J. J. Green, H. T. Li, D. Klenerman, and S. Balasubramanian. 2003. Studies on the structure and dynamics of the human telomeric G quadruplex by single-molecule fluorescence resonance energy transfer. Proc. Natl. Acad. Sci. USA. 100:14629-14634.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 14629-14634
-
-
Ying, L.M.1
Green, J.J.2
Li, H.T.3
Klenerman, D.4
Balasubramanian, S.5
-
34
-
-
0141993702
-
Protein conformational dynamics probed by single-molecule electron transfer
-
Yang, H., G. B. Luo, P. Karnchanaphanurach, T. M. Louie, I. Rech, S. Cova, L. Y. Xun, and X. S. Xie. 2003. Protein conformational dynamics probed by single-molecule electron transfer. Science. 302:262-266.
-
(2003)
Science
, vol.302
, pp. 262-266
-
-
Yang, H.1
Luo, G.B.2
Karnchanaphanurach, P.3
Louie, T.M.4
Rech, I.5
Cova, S.6
Xun, L.Y.7
Xie, X.S.8
-
35
-
-
1542501215
-
Dynamics and folding of single two-stranded coiled-coil peptides studied by fluorescent energy transfer confocal microscopy
-
Talaga, D. S., W. L. Lau, H. Roder, J. Y. Tang, Y. W. Jia, W. F. DeGrado, and R. M. Hochstrasser. 2000. Dynamics and folding of single two-stranded coiled-coil peptides studied by fluorescent energy transfer confocal microscopy. Proc. Natl. Acad. Sci. USA. 97:13021-13026.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 13021-13026
-
-
Talaga, D.S.1
Lau, W.L.2
Roder, H.3
Tang, J.Y.4
Jia, Y.W.5
DeGrado, W.F.6
Hochstrasser, R.M.7
-
36
-
-
28444431959
-
Probing structural heterogeneities and fluctuations of nucleic acids and denatured proteins
-
Laurence, T. A., X. X. Kong, M. Jager, and S. Weiss. 2005. Probing structural heterogeneities and fluctuations of nucleic acids and denatured proteins. Proc. Natl. Acad. Sci. USA. 102:17348-17353.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 17348-17353
-
-
Laurence, T.A.1
Kong, X.X.2
Jager, M.3
Weiss, S.4
-
37
-
-
33645765585
-
Direct observation of abortive initiation and promoter escape within single immobilized transcription complexes
-
Margeat, E., A. N. Kapanidis, P. Tinnefeld, Y. Wang, J. Mukhopadhyay, R. H. Ebright, and S. Weiss. 2006. Direct observation of abortive initiation and promoter escape within single immobilized transcription complexes. Biophys. J. 90:1419-1431.
-
(2006)
Biophys. J
, vol.90
, pp. 1419-1431
-
-
Margeat, E.1
Kapanidis, A.N.2
Tinnefeld, P.3
Wang, Y.4
Mukhopadhyay, J.5
Ebright, R.H.6
Weiss, S.7
-
38
-
-
2542498681
-
The sigma 70 subunit of RNA polymerase mediates a promoter-proximal pause at the lac promoter
-
Nickels, B. E., J. Mukhopadhyay, S. J. Garrity, R. H. Ebright, and A. Hochschild. 2004. The sigma 70 subunit of RNA polymerase mediates a promoter-proximal pause at the lac promoter. Nat. Struct. Mol. Biol. 11:544-550.
-
(2004)
Nat. Struct. Mol. Biol
, vol.11
, pp. 544-550
-
-
Nickels, B.E.1
Mukhopadhyay, J.2
Garrity, S.J.3
Ebright, R.H.4
Hochschild, A.5
-
39
-
-
1342345189
-
Catabolite activator protein: DNA binding and transcription activation
-
Lawson, C. L., D. Swigon, K. S. Murakami, S. A. Darst, H. M. Berman, and R. H. Ebright. 2004. Catabolite activator protein: DNA binding and transcription activation. Curr. Opin. Struct. Biol. 14:10-20.
-
(2004)
Curr. Opin. Struct. Biol
, vol.14
, pp. 10-20
-
-
Lawson, C.L.1
Swigon, D.2
Murakami, K.S.3
Darst, S.A.4
Berman, H.M.5
Ebright, R.H.6
-
40
-
-
0038400185
-
Chemical genetics: Tailoring tools for cell biology
-
Mayer, T. U. 2003. Chemical genetics: tailoring tools for cell biology. Trends Cell Biol. 13:270-277.
-
(2003)
Trends Cell Biol
, vol.13
, pp. 270-277
-
-
Mayer, T.U.1
-
41
-
-
0034899541
-
Combinatorial fluorescence energy transfer tags for multiplex biological assays
-
Tong, A. K., Z. M. Li, G. S. Jones, J. J. Russo, and J. Y. Ju. 2001. Combinatorial fluorescence energy transfer tags for multiplex biological assays. Nat. Biotechnol. 19:756-759.
-
(2001)
Nat. Biotechnol
, vol.19
, pp. 756-759
-
-
Tong, A.K.1
Li, Z.M.2
Jones, G.S.3
Russo, J.J.4
Ju, J.Y.5
-
42
-
-
33746743013
-
Viewing dynamic assembly of molecular complexes by multi-wavelength single-molecule fluorescence
-
Friedman, L. J., J. Chung, and J. Gelles. 2006. Viewing dynamic assembly of molecular complexes by multi-wavelength single-molecule fluorescence. Biophys. J. 91:1023-1031.
-
(2006)
Biophys. J
, vol.91
, pp. 1023-1031
-
-
Friedman, L.J.1
Chung, J.2
Gelles, J.3
-
43
-
-
27744519499
-
Pulsed interleaved excitation
-
Muller, B. K., E. Zaychikov, C. Brauchle, and D. C. Lamb. 2005. Pulsed interleaved excitation. Biophys. J. 89:3508-3522.
-
(2005)
Biophys. J
, vol.89
, pp. 3508-3522
-
-
Muller, B.K.1
Zaychikov, E.2
Brauchle, C.3
Lamb, D.C.4
|