PCR-based methods for fish and fishery products authentication

Trends in Food Science and Technology

Volumn 18, Issue 11, 2007, Pages 558-566

  Asensio Gil, Luis ^a  

^a Facultad de Farmacia   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

CUSTOMER SATISFACTION; FOOD PRODUCTS; LAWS AND LEGISLATION; REAL TIME SYSTEMS;

FISHERY INDUSTRY; FISHERY PRODUCTS AUTHENTICATION; FRAUDULENT PRACTICES; PCR SEQUENCING;

FISHERIES;

EID: 34748851237     PISSN: 09242244     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tifs.2007.04.016     Document Type: Article

References (95)

1. Akasaki T., Yanagimoto T., Yamakami K., Tomonaga H., and Sato S. Species identification and PCR-RFLP analysis of cytochrome b gene in cod fish (Order Gadiformes) products. Journal of Food Science 71 (2006) 190-195
2. Alberts B., Bray D., Lewis J., Raff M., Roberts K., and Watson J.D. Molecular biology of the cell (1994), Garland Publishing Inc., New York and London
3. Arahishi F. PCR-RFLP analysis of nuclear nontranscribed spacer for mackerel species identification. Journal of Agricultural and Food Chemistry 53 (2005) 508-511
4. Asensio L., González I., Fernández A., Céspedes A., Rodríguez M.A., Hernández P.E., et al. Identification of Nile perch (Lates niloticus), grouper (Epinephelus guaza), and wreck fish (Polyprion americanus) fillets by PCR amplification of the 5S rDNA gene. Journal of the AOAC International 84 (2001) 777-781
5. Asensio L., González I., Fernández A., Rodríguez M.A., Hernández P.E., García T., et al. PCR-SSCP: a simple method for the authentication of grouper (Epinephelus guaza), wreck fish (Polyprion americanus) and Nile perch (Lates niloticus) fillets. Journal of Agricultural and Food Chemistry 49 (2001) 1720-1723
6. Asensio L., González I., Fernández A., Rodríguez M.A., Lobo E., Hernández P.E., et al. Application of random amplified polymorphic DNA (RAPD) analysis for identification of grouper (Epinephelus guaza), wreck fish (Polyprion americanus), and Nile perch (Lates niloticus) fillets. Journal of Food Protection 65 (2002) 432-435
7. Ataman C., Celik U., and Rehbein H. Identification of some Aegean fish species by native isoelectric focusing. European Food Research and Technology 222 (2006) 99-104
8. Bardakci F., and Skibinski D.O.F. Application of the RAPD technique in tilapia fish: species and subspecies identification. Heredity 73 (1994) 117-123
9. Brodmann P.D., and Moor D. Sensitive and semi-quantitative TaqManTM real-time polymerase chain reaction systems for the detection of beef (Bos taurus) and the detection of the family Mammalia in food and feed. Meat Science 65 (2003) 599-607
10. Caetano-Anollés G., Bassam B.J., and Gresshoff P.M. DNA amplification fingerprinting using very short arbitrary oligonucleotide primers. Biotechnology 9 (1991) 553-557
11. Callejas C., and Ochando M.D. Molecular identification (RAPD) of the eight species of the genus Barbus (Cyprinidae) in the Iberian Peninsula. Journal of Fish Biology 59 (2001) 1589-1599
12. Canapa A., Barucca M., MarinellI A., and Olmo E. Molecular data from the 16S rRNA gene for the phylogeny of Pectinidae (Mollusca: Bivalvia). Journal of Molecular Evolution 50 (2000) 93-97
13. Céspedes A., García T., Carrera E., González I., Fernández A., Hernández P.E., et al. Identification of sole (Solea solea) and Greenland halibut (Reinhardtius hippoglossoides) by PCR amplification of the 5S rDNA gene. Journal of Agricultural and Food Chemistry 47 (1999) 1046-1050
14. Céspedes A., García T., Carrera E., González I., Fernández A., Hernández P.E., et al. Application of polymerase chain reaction-single strand conformational polymorphism (PCR-SSCP) to identification of flatfish species. Journal of the AOAC International 82 (1999) 903-907
15. Céspedes A., García T., Carrera E., González I., Sanz B., Hernández P.E., et al. Identification of flatfish species using polymerase chain reaction (PCR) and restriction analysis of the cytochrome b gene. Journal of Food Science 63 (1998) 206-209
16. Chakraborty A., Aranishi F., and Iwatsuki Y. Polymerase chain reaction - restriction fragment length polymorphism analysis for species identification of hairtail fish fillets from supermarkets in Japan. Fisheries Science 73 (2007) 197-201
17. Chow S., and Inogue S. Intra- and interspecific restriction fragment length polymorphism in mitochondrial genes of Thunnus Tuna species. Bulletin of the National Research Institute of Far Seas Fisheries 30 (1993) 207-224
18. Colombo F., Cerioli M., Colombo M.M., Marchisio E., Malandra R., and Renon P. A simple polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) method for the differentiation of cephalopod mollusc families Loliginidae from Ommastrephidae, to avoid substitutions in fishery field. Food Control 13 (2002) 185-190
19. Comesaña A.S., Abella P., and Sanjuán A. Identification of flatfish by PCR-RFLP. Journal of the Science of Food and Agriculture 83 (2003) 752-759
20. Comi G., Iacumin L., Rantsiou K., Cantoni C., and Cocolin L. Molecular methods for the differentiation of species used in production of cod-fish can detect commercial frauds. Food Control 16 (2005) 37-42
21. Dahle G., Rahman M., and Eriksen A.G. RAPD fingerprinting used for discriminating among three populations of Hilsa shad (Tenualosa ilisha). Fisheries Science 32 (1997) 263-269
22. De la Herrán R., Robles F., Martínez-Espín E., Lorente J., Rejón C.R., Garido-Ramos M.A., et al. Genetic identification of Western Mediterranean sturgeons and its implication for conservation. Conservation Genetics 5 (2004) 545-551
23. De Mello A.J. DNA amplification: does 'small' really mean 'efficcient'?. Lab on a Chip 1 (2001) 24N-29N
24. DeSalle R., and Birstein V.J. PCR identification of black caviar. Nature 381 (1996) 197-198
25. Dinesh K.R., Lim T.M., Chua K.L., Chan W.K., and Phang V.P.E. RAPD analysis: an efficient method of DNA fingerprinting in fishes. Zoological Science 10 (1993) 849-854
26. Dooley, J. J., & Garrett, S. D. (2001). Development of meat speciation assays using the agilent 2100 bioanalyser. Agilent technologies applications note no. 5988-4069EN.
27. Dooley J.J., Sage H.D., Brown H.M., and Garrett S.D. Improved fish species identification by use of lab-on-a-chip technology. Food Control 16 (2005) 601-607
28. Dooley J.J., Sage H.D., Clarke M.L., Brown H.M., and Garrett S.D. Fish species identification using PCR-RFLP analysis and lab-on-chip capillary electrophoresis: application to detect white fish species in food products and an interlaboratory study. Journal of Agricultural and Food Chemistry 53 (2005) 3348-3357
29. Edwards M.C., and Gibbs R.A. Multiplex PCR: advantages, development and applications. PCR Methods and Applications 3 (1994) S65-S75
30. European Council Regulation (EC) No 104/2000 of 17 December 1999 on the common organization of the markets in fishery and aquaculture products. Official Journal of the European Communities L 17 (1999) 22-52
31. Ferguson A., Taggart J.B., Prodöhl P.A., McMeel O., Thompson C., Stone C., et al. The application of molecular markers to the study and conservation of fish populations, with special reference to Salmo. Journal of Fish Biology 47 (1995) S103-S126
32. Fernández A., García T., Asensio L., Rodríguez M.A., González I., Céspedes A., et al. Identification of the clam species Ruditapes decussatus (grooved carpet shell), Venerupis pullastra (pullet carpet shell) and Ruditapes philippinarum (japanese carpet shell) by PCR-RFLP. Journal of Agricultural and Food Chemistry 48 (2000) 3336-3341
33. Fernández A., García T., Asensio L., Rodríguez M.A., González I., Lobo E., et al. Identification of the clam species Ruditapes decussatus (grooved carpet shell), Venerupis romboides (yellow carpet shell) and Venerupis pullastra (pullet carpet shell) by ELISA. Food and Agricultural Immunology 14 (2002) 65-71
34. Fernández A., García T., Asensio L., Rodríguez M.A., González I., Lobo E., et al. Genetic differentiation between the clam species Ruditapes decussatus (grooved carpet shell) and Venerupis pullastra (pullet carpet shell) by PCR-SSCP analysis. Journal of the Science of Food and Agriculture 82 (2002) 881-885
35. Fujita K., and Silver J. Single-strand conformational polymorphism. PCR Methods and Applications 4 (1994) S137-S139
36. Glavac D., and Dean M. Optimization of the single-strand conformation polymorphism (SSCP) technique for detection of point mutations. Human Mutation 2 (1993) 404-414
37. Gross R., Nilsson J., and Schmitz M. A new species-specific nuclear DNA marker for identification of hybrids between Atlantic salmon and brown trout. Journal of Fish Biology 49 (1996) 537-540
38. Hayashi K. PCR-SSCP: a simple and sensitive method for detection of mutations in the genomic DNA. PCR Methods and Applications 1 (1991) 34-38
39. Heid C.A., Stevens J., Livak K.J., and Williams P.M. Real time quantitative PCR. Genome Research 6 (1996) 986-994
40. Hird H.J., Hold G.L., Chrisholm J., Reece P., Russell V.J., Brown J., et al. Development of a method for the quantification of haddock (Melanogrammus aeglefinus) in commercial products using real-time PCR. European Food Research and Technology 220 (2005) 633-637
41. Holland P.M., Abramson R.D., Watson R., and Gelfand D.H. Detection of specific polymerase chain reaction product by utilizing the 5′-3′ exonuclease activity of Thermus aquaticus DNA polymerase. Proceedings of the National Academy of Sciences of the United States of America 88 (1991) 7276-7280
42. Horstkotte B., and Rehbein H. Fish species identification by means of restriction fragment length polymorphism and high-performance liquid chromatography. Journal of Food Science 68 (2003) 2658-2666
43. Hsieh H.S., Chai T., Cheng C.A., Hsieh Y.W., and Hwang D.F. Application of DNA technique for identifying the species of different processed products of swordfish meat. Journal of Food Science 69 (2004) 1-6
44. Hsieh H.S., Chai T., and Hwang D.F. Using the PCR-RFLP method to identify the species of different processed products of billfish meats. Food Control 18 (2007) 369-374
45. Jeffreys A.J., Micola J.R., Wilson V., and Wong Z. Spontaneous mutation rates to new length alleles at tandem repetitive hypervariable loci in human DNA. Nature 332 (1988) 278-281
46. Jeffreys A.J., Wilson V., and Thein S.L. Hypervariable 'minisatellite' regions in human DNA. Nature 314 (1985) 67-74
47. Jérôme M., Lemaire C., Bautista J.M., Fleurence J., and Etienne M. Molecular phylogeny and species identification of sardines. Journal of Agricultural and Food Chemistry 51 (2003) 43-50
48. Jin L.G., Cho J.G., Seong K.B., Park J.Y., Kong I.S., and Hong Y.K. 18 rRNA gene sequences and random amplified polymorphic DNA used in discriminating Manchurian trout from other freshwater salmonids. Fisheries Science 72 (2006) 903-905
49. Johansen B., Johnsen O.C., and Valla S. The complete nucleotide sequence of the growth hormone gene from Atlantic salmon (Salmo salar). Gene 77 (1989) 317-324
50. Knuutinen J., and Harjula P. Identification of fish species by reverse-phase high-performance liquid chromatography with photodiode-array detection. Journal of Chromatography B 705 (1998) 11-21
51. Krishnan M., Namasivayam V., Lin R., Pal R., and Burns M.A. Microfabricated reaction and separation systems. Current Opinion in Biotechnology 12 (2001) 92-98
52. Lin W.F., and Hwang D.F. Application of PCR-RFLP analysis on species identification of canned tuna. Food Control 18 (2007) 1050-1057
53. Lin Y.S., Poh Y.P., and Tzeng C.S. A phylogeny of freshwater eels inferred from mitochondrial genes. Molecular Phylogenetics and Evolution 20 (2001) 252-261
54. Litt M., and Luty J.A. A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene. The American Journal of Human Genetics 4 (1989) 397-401
55. Lockley A.K., and Bardsley R.G. DNA-based methods for food authentication. Trends in Food Science & Technology 11 (2000) 67-77
56. Lockley A.K., and Bardsley R.G. Novel method for the discrimination of tuna (Thunnus thynnus) and bonito (Sarda sarda) DNA. Journal of Agricultural and Food Chemistry 48 (2000) 4463-4468
57. López-Calleja I., González I., Fajardo V., Martín I., Hernández P.E., García T., et al. Real-time taqman PCR for quantitative detection of cows' milk in ewes' milk mixtures. International Dairy Journal 17 (2007) 729-736
58. López I., and Pardo M.A. Application of relative quantification Taqman real-time polymerase chain reaction technology for the identification and quantification of Thunnus alalunga and Thunnus albacares. Journal of Agricultural and Food Chemistry 53 (2005) 4554-4560
59. Mackie I., Craig A., Etienne M., Jerome M., Fleurence J., Jessen F., et al. Species identification of smoked and gravid fish products by sodium dodecylsulphate polyacrylamide gel electrophoresis, urea isoelectric focusing and native isoelectric focusing: a collaborative study. Food Chemistry 71 (2000) 1-7
60. Mackie I.M. Authenticity of fish. In: Ashurt P.R., and Dennis M.J. (Eds). Food authentication (1996), Blackie Academic and Professional, London 140-170
61. Mackie I.M., Pryde S.E., Gonzales-Sotelo C., Medina I., Pérez-Martín R., Quinteiro J., et al. Challenges in the identification of species of canned fish. Trends in Food Science & Technology 10 (1999) 9-14
62. Marko P.B., Lee S.C., Rice A.M., Gramling J.M., Fitzhenry T.M., McAalister J.S., et al. Mislabelling of a depleted reef fish. Nature 430 (2004) 309-310
63. Martínez I., and Malmheden Yman I. Species identification in meat products by RAPD analysis. Food Research International 31 (1998) 459-466
64. Meyer R., Höfelein C., Lüthy J., and Candrian U. Polymerase chain reaction-restriction fragment length polymorphism analysis: a simple method for species identification in food. Journal of the AOAC International 78 (1995) 1542-1551
65. Murgia R., Tola G., Archer S.N., Vallerga S., and Hirano J. Genetic identification of grey mullet species (Mugilidae) by analysis of mitochondrial DNA sequence: application to identify the origin of processed ovary products (Bottarga). Marine Biotechnology 4 (2002) 119-126
66. Nakamura Y., Leppert M., O'Connell P., Wolff R., Holm T., Culver M., et al. Variable numbers of tandem repeats (VNTR) markers for human gene mapping. Science 235 (1987) 1616-1622
67. O'Reilly P., and Wright J.M. The evolving technology of DNA fingerprinting and its application to fisheries and aquaculture. Journal of Fish Biology 47 Suppl. A (1995) 29-55
68. Ochiai Y., Ochiai L., Hashimoto K., and Watabe S. Quantitative estimation of dark muscle content in the mackerel meat paste and its products using antisera against myosin light chains. Journal of Food Science 66 (2001) 1301-1305
69. Oohara I. Detection of single strand conformation polymorphisms (SSCPs) on mitochondrial DNA fragments between two domesticated strains of rainbow trout Oncorhynchus mykiss. Fisheries Science 63 (1997) 151-152
70. Orita M., Suzuki Y., Sekiya T., and Hayashi K. A rapid and sensitive detection of point mutations and genetic polymorphisms using polymerase chain reaction. Genomics 5 (1989) 874-879
71. Pardo M.A., and Pérez-Villareal B. Identification of commercial canned tuna species by restriction site analysis of mitochondrial DNA products obtained by nested primer PCR. Food Chemistry 86 (2004) 143-150
72. Partis L., and Wells R.J. Identification of fish species using random amplified polymorphic DNA (RAPD). Molecular and Cellular Probes 10 (1996) 435-441
73. Pelliccia F., Barzotti R., Volpi E.V., Bucciarelli E., and Rocchi A. Nucleotide sequence and chromosomal mapping of the 5S rDNA repeat of the crustacean Proasellus coxallis. Genome 41 (1998) 129-133
74. Pendás A.M., Moran P., Martínez J.L., and García-Vázquez E. Applications of 5S rDNA in Atlantic salmon, brown trout and in Atlantic salmon by brown trout hybrid identification. Molecular Ecology 4 (1995) 275-276
75. Pepe T., Trotta M., DiMarco I., Cennamo P., Anastasio A., and Cortesi M.L. Mitochondrial cytochrom b DNA sequence variations: an approach to fish species identification in processed fish products. Journal of Food Protection 68 (2005) 421-425
76. Quinteiro J., Sotelo C.G., Rehbein H., Pryde S.E., Medina I., Pérez-Martín R.I., et al. Use of mtDNA direct polymerase chain reaction (PCR) sequencing and PCR-restriction fragment length polymorphism methodologies in species identification of canned tuna. Journal of Agricultural and Food Chemistry 46 (1998) 1662-1669
77. Ram J.L., Ram M.L., and Baidoun F.F. Authentication of canned tuna and bonito sequence and restriction site analysis of polymerase chain reaction products of mitochondrial DNA. Journal of Agricultural and Food Chemistry 44 (1996) 2460-2467
78. Rehbein H., Kress G., and Schmidt T. Application of PCR-SSCP to species identification of fishery products. Journal of Science of Food and Agriculture 74 (1997) 35-41
79. Rehbein H., Mackie I.M., Pryde S., Gonzales-Sotelo C., Medina I., Pérez-Martín R., et al. Fish species identification in canned tuna by PCR-SSCP: validation by a collaborative study and investigation of intra-species variability of the DNA-patterns. Food Chemistry 64 (1999) 263-268
80. Rehbein H., Sotelo C.G., Pérez-Martín R.I., Chapela-Garrido M.J., Hold G.L., Russell V.J., et al. Differentiation of raw or processed eel by PCR-based techniques: restriction fragment length polymorphism analysis (RFLP) and single strand conformation polymorphism analysis (SSCP). European Food Research and Technology 214 (2002) 171-177
81. Renshaw M.A., Saillant E., Broughton R.E., and Gold J.R. Application of hypervariable genetic markers to forensic identification of 'wild' from hatchery-raised red drum, Sciaenops ocellatus. Forensic Science International 156 (2006) 9-15
82. Rossen L., Norskov P., Holmstom K., and Rasmussen O.F. Inhibition of PCR by components of food samples, microbial diagnostic assays and DNA-extraction solutions. International Journal of Food Microbiology 17 (1992) 37-45
83. Saiki R.B., Gelfand D.H., Stoffel S., Scharf S.J., Higuchi R., Horn G.T., et al. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239 (1988) 487-491
84. Sastri D.C., Hilu K., Appels R., Lagudah E.S., Playford J., and Baum B.R. An overview of evolution in plant 5S DNA. Plant Systematics and Evolution 183 (1992) 169-181
85. Sebastio P., Zanelli P., and Neri-Tauro M. Identification of anchovy (Engraulis encrasicholus L.) and gilt sardine (Sardinella aurita) by polymerase chain reaction, sequence of their mitochondrial cytochrome b gene, and restriction analysis of polymerase chain reaction products in semipreserves. Journal of Agricultural and Food Chemistry 49 (2001) 1194-1199
86. Sotelo, C. G., Chapela, M. J., Rey, M., & Pérez-Martín, R. I. (2003). Development of an identification and quantitation system for cod (Gadus morhua) using taqman assay. In First Joint Trans-Atlantic Fisheries Technology Conference (pp. 195-198). Reykjavik, Iceland, 11-14 June 2003, L39.
87. Takagi M., and Taniguchi N. Random amplified polymorphic DNA (RAPD) for identification of three species of Anguilla, A. japonica, A. australis and A. bicolor. Fisheries Science 61 (1995) 884-885
88. Taylor M.I., Fox C., Rico I.A., and Rico C. Species-specific TaqMan probes for simultaneous identification of (Gadus morhua L.), haddock (Melanogrammus aeglefinus L.) and whiting (Merlangius merlangus L.). Molecular Ecology Notes 2 (2002) 599-601
89. Trotta M., Schönhuth S., Pepe T., Cortesi M.L., Puyet A., and Bautista J.M. A multiplex-PCR method for use in real-time PCR for identification of fish fillets from grouper (Epinephelus spp. and Mycteroperca spp.) and common substitute species. Journal of Agricultural and Food Chemistry 53 (2005) 2039-2045
90. Venkatesh B., and Brenner S. Genomic structure and sequence of the pufferfish (Fugu rubripes) growth hormone-encoding gene, a comparative analysis of teleost growth hormone gene. Gene 187 (1997) 211-215
91. Watabe S., Hirayama Y., Imai J., Kikuchi K., and Yamashita M. Sequences of cDNA clones encoding alpha-actin of carp and goldfish skeletal muscles. Fisheries Science 61 (1995) 998-1003
92. Weder J.K., Rehbein H., and Kaiser K.P. On the specificity of tuna-directed primers in PCR-SSCP analysis of fish and meat. European Food Research and Technology 213 (2004) 139-144
93. Williams J.G.K., Kubelik A.R., Livak K.J., Rafalski J., and Tingey S.V. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research 18 (1990) 6531-6535
94. Yamazaki Y., Shimada N., and Tago Y. Detection of hybrids between masu salmon Oncorhynchus masou masou and amago salmon O. m. ishikawae occurred in the Jinzu River using a random amplified polymorphic DNA technique. Fisheries Science 71 (2005) 320-326
95. Zhang J., Huang H., Cai Z., and Huang L. Species identification in salted products of red snappers by semi-nested PCR-RFLP based on the mitochondrial 12S rRNA gene sequence. Food Control 17 (2006) 557-563