Species identification and PCR-RFLP analysis of cytochrome b gene in cod fish (order Gadiformes) products

Journal of Food Science

Volumn 71, Issue 3, 2006, Pages

  Akasaki, Tetsuya ^a   Yanagimoto, Takashi ^b   Yamakami, Kaoru ^c   Tomonaga, Hirosuke ^a   Sato, Soei ^a  

^a Ministry of Finance   (Japan)

^b FISHERIES RESEARCH AGENCY   (Japan)

^c Ministry of Finance   (Japan)

Author keywords

Cod fish products; PCR RFLP; Phylogenetic analysis; Species identification

Indexed keywords

GADIFORMES;

EID: 33646337971     PISSN: 00221147     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-2621.2006.tb15616.x     Document Type: Article

References (30)

1. Aranishi F, Okimoto T, Izumi S. 2005. Identification of gadoid species (Pisces, Gadidae) by PCR-RFLP analysis. J Appl Genet 46(1):69-73.
2. Ashoor SH, Monte WC. Stiles PG. 1988. Liquid Chromatographic identification of meats. J Assoc Off Anal Chem 71(2):397-403.
3. Bakke I, Johanse S. 2005. Molecular phylogenetics of Gadidae and related gadiformes based on mitochondrial DNA sequences. Marine Biotechnol 7:61-9.
4. Bartlett SE, Davidson WS. 1991. Identification of Thunnus tuna species by the polymerase chain reaction and direct sequence analysis of their mitochondrial cytochrome b genes. Can J Fish Aquat Sci 48:309-17.
5. Blin N, Stafford DW. 1976. A general method for isolation of high molecular weight DNA from eukaryotes. Nucleic Acids Res 3:2303-8.
6. Carr SM, Kivlichan DS, Pepin P, Crutcher DC. 1999. Molecular systematics of gadid fishes: implications for the biogeographic origins of Pacific species. Can J Zool 77:19-26.
7. Chow S, Kishino H. 1995. Phylogenetic relationships between tuna species of the genus Thunnus (Scombridae: Teleostei): inconsistent implications from morphology, nuclear and mitochondrial genomes. J Molec Evol 41:741-8.
8. Chow S, Nohara K, Tanabe T, Itoh T, Tsuji S, Nishikawa Y, Uyeyanagi S, Uchikawa K. 2003. Genetic and morphological identification of larval and small juvenile tunas (Pisces: Scombridae) caught by a mid-water trawl in the western Pacific. Bull Fish Res Agen 8:1-14.
9. Chow S, Okamoto H, Uozumi Y, Takeuchi Y. 1997. Genetic stock structure of the swordfish (Xiphias gladius) inferred by PCR-RFLP analysis of the mitochondrial DNA control region. Mar Biol 127:359-67.
10. Dooley JJ, Sage HD, Clarke ML, Brown HM, Garrett SD. 2005. Fish species identification using PCR-RFLP analysis and lab-on-a-chip capillary electrophoresis: application to detect white fish species in food products and an interlaboratory study. J Agric Food Chem 53:3348-57.
11. Federica B, Vittorio M, Sergio C, Franco V. 2001. Identification of species in animal feedstuffs by polymerase chain reaction-restriction fragment length polymorphism analysis of mitochondrial DNA. J Agric Food Chem 49:3775-81.
12. Forrest ARR, Carnegie PR. 1994. Identification of gourmet meat using FINS (forensically informative nucleotide sequencing). Biotechniques 17(1):24-6.
13. Jerome M, Lemaire C, Verrez-Bagnis V, Etienne M. 2003. Direct sequencing method for species identification of canned sardine and sardine-type products. J Agric Food Chem 51:7326-32.
14. Kumur S, Tamura K, Jakobsen I, Nei M. 2001. MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17:1244-5.
15. Martin AP, Kessing BD, Palumbi SR. 1990. Accuracy of estimating genetic distance between species from short sequences of mitochondrial DNA. Molec Biol Evol 7:485-8.
16. Miya M, Kawaguchi A, Nishida M. 2001. Mitogenomic exploration of higher teleostean phylogenies: A case study for moderate-scale evolutionary genomics with 38 newly determined complete mitochondrial DNA sequences. Molec Biol Evol 18:1993-2009.
17. Pavel K, Eva R. 2003. Identification of species-specific DNA in feedstuffs. J Agric Food Chem 51:7655-8.
18. Pepe T, Trotta M, Marco ID, Cennamo P, Anastasio A, Cortesi ML. 2005. Mitochondrial cytochrome b DNA sequence variations: an approach to fish species identification in processed fish products. J Food Prot 68(2):421-5.
19. Pogson GH, Mesa KA. 2004. Positive Darwinian selection at the pantophysin (Pan I) locus in marine gadid fishes. Molec Biol Evol 21:65-75.
20. Quinteiro J, Sotelo CG, Rehbein H, Pryde SE, Medina I, Perez-Martin RI, Rey-Mendez M, Mackie IM. 1998. Use of mtDNA direct polymerase chain reaction (PCR) Sequencing and PCR-restriction fragment length polymorphism methodologies in species identification of canned tuna. J Agric Food Chem 46:1662-9.
21. Quinteiro J, Vidai R, Izquierdo M, Sotelo CG, Chapela MJ, Perez-Martin RI, Rehbein H, Hold GL, Russell VJ, Pryde SE, Rosa C, Santos AT, Rey-Mendez M. 2001. Identification of hake species (Merluccius Genus) using sequencing and PCR-RFLP analysis of mitochondrial DNA control region sequences. J Agric Food Chem 49:5108-14.
22. Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molec Biol Evol 4:406-25.
23. Sotelo CG, Pineiro C, Gallardo JM, Perez-Martin RI. 1993. Fish species identification in seafood products. Trends Food Sci Technol 4:395-401.
24. Tamura K, Nei M. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molec Biol Evol 10:512-26.
25. Tepedino V, Berrini A, Borromeo V, Gaggioli D, Cantoni C, Manzoni P, Secchi C. 2001. Identification of commercial fish species belonging to the orders pleuronectiformes and gadiformes: library of isoelectric focusing patterns. J AOAC Int 84(5):1600-7.
26. Terol J, Mascarell R, Fernandez-Pedrosa V, Perez-Alonso M. 2002. Statistical validation of the identification of tuna species: bootstrap analysis of mitochondrial DNA sequences. J Agric Food Chem 50:963-9.
27. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876-82.
28. Ukishima Y, Kino M, Kubota H, Wada S, Okada S. 1991. Identification of whale species by thin-layer isoelectric focusing of sarcoplasmic proteins. J Assoc Off Anal Chem 74(6):943-50.
29. Weder JKP, Rehbein H, Kaiser KP. 2001. On the specificity of tuna-detected primers in PCR-SSCP analysis of fish and meat. Eur Food Res Technol 213:139-44.
30. Yanagimoto T, Kitamura T, Kobayashi T. 2004. Complete nucleotide sequence and variation of mitochondrial DNA from 10 individuals of walleye pollock, Theragra chalcogramma. Fish Sci 70:885-95.