Quantitative real-time measurements of DNA hybridization with alkylated nonoxidized silicon nanowires in electrolyte solution

Journal of the American Chemical Society

Volumn 128, Issue 50, 2006, Pages 16323-16331

  Bunimovich, Yuri L ^a   Shin, Young Shik ^a   Yeo, Woon Seok ^a   Amori, Michael ^a   Kwong, Gabriel ^a   Heath, James R ^a  

^a California Institute of Technology   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINES; ELECTROSTATICS; NANOSTRUCTURED MATERIALS; SEMICONDUCTING SILICON; SILICON SENSORS; SURFACE PLASMON RESONANCE;

BIOMOLECULAR SENSING; BIOMOLECULES; NANOWIRES; OLIGONUCLEOTIDES;

DNA SEQUENCES;

ALKYL GROUP; AMINE; ELECTROLYTE; NANOWIRE; SILICON; SILICON DIOXIDE; SILOXANE; SINGLE STRANDED DNA;

ADSORPTION; ALKYLATION; ARTICLE; CONCENTRATION (PARAMETERS); DNA BINDING; DNA HYBRIDIZATION; KINETICS; MEASUREMENT; MODEL; OXIDATION; QUANTITATIVE ANALYSIS; SCREENING; STANDARD; SURFACE PLASMON RESONANCE; SURFACE PROPERTY;

ALKYLATION; BIOSENSING TECHNIQUES; DNA; ELECTROLYTES; KINETICS; MICROSCOPY, ELECTRON, SCANNING; MOLECULAR STRUCTURE; NANOWIRES; NUCLEIC ACID HYBRIDIZATION; OXIDATION-REDUCTION; SILICON; SOLUTIONS; SPECTRUM ANALYSIS; TIME FACTORS;

EID: 33845595605     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja065923u     Document Type: Article

References (59)

1. Kong, J.; Franklin, N. R.; Zhou, C. W.; Chapline, M. G.; Peng, S.; Cho, K. J.; Dai, H. Science 2000, 287, 622.
2. Patolsky, F.; Lieber, C. M. Mater. Today 2005, 8, 20.
3. Park, S. J.; Taton, T. A.; Mirkin, C. A. Science 2002, 295, 1503.
4. Ziegler, C. Anal. Bioanal. Chem. 2004, 379, 946.
5. Lasseter, T. L.; Cai, W.; Hamers, R. J. Analyst 2004, 129, 3.
6. Davidson, E. H. et al. Science 2002, 295, 1669.
7. Kitano, H. Science 2002, 295, 1662.
8. Hood, L.; Heath, J. R.; Phelps, M. E.; Lin, B. Science 2004, 306, 640.
9. Chen, R. J.; Bangsaruntip, S.; Drouvalakis, K. A.; Kam, N. W. S.; Shim, M.; Li, Y.; Kim, W.; Utz, P. J.; Dai, H. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 4984.
10. Star, A.; Tu, E.; Niemann, J.; Gabriel, J.-C. P.; Joiner, S.; Valcke, C. Proc. Nat. Acad. Sci. U.S.A. 2006, 103, 921.
11. Besteman, K.; Lee, J.; Wiertz, F. G. M.; Heering, H. A.; Dekker: C. Nano Lett. 2003, 3, 727.
12. Hahm, J.; Lieber, C. M. Nano Lett. 2004, 4, 51.
13. Li, Z.; Chen, Y.; Li, X.; Kamins, T. I.; Nauka, K.; Williams, R. S. Nano Lett. 2004, 4, 245.
14. Li, C.; Curreli, M.; Lin, H.; Lei, B.; Ishikawa, F. N.; Datar, R.; Cote, R. J.; Thompson, M. E.; Zhou, C. J. Am. Chem. Soc. 2005, 127, 12484.
15. Ramanathan, K.; Bangar, M. A.; Yun, M.; Chen, W.; Myung, N. V.; Mulchandani, A. J. Am. Chem. Soc. 2005, 127, 496.
16. Lud, S. Q.; Nikolaides, M. G.; Haase, I.; Fischer, M.; Bausch, A. R. ChemPhysChem 2006, 7, 379.
17. Israelachvili, J. Intermolecular and Surface Forces; Academic Press: London, 1985.
18. Zheng, G. F.; Patolsky, F.; Cui, Y.; Wang, W. U.; Lieber, C. M. Nat. Biotechnol. 2005, 23, 1294.
19. Okahata, Y.; Kawase, M.; Niikura, K.; Ohtake, F.; Furusawa, H.; Ebara, Y. Anal. Chem. 1998, 70, 1288.
20. Li, Z.; Rajendran, B.; Kamins, T. I.; Li, X.; Chen, Y.; Williams, R. S. Appl. Phys. A 2005, 80, 1257.
21. Vieu, C.; Carcenac, F.; Pepin, A.; Chen, Y.; Mejias, M.; Lebib, A.; Manin-Ferlazzo, L.; Couraud, L.; Launois, H. Ap. Surf. Sci. 2000, 164, 111.
22. Yang, P. D. MRS Bull. 2005, 30, 85.
23. Heath, J. R.; LeGoues, F. K. Chem. Phys. Lett. 1993, 208, 263.
24. Morales, A.; Lieber, C. M. Science 1998, 279, 208.
25. Chung, S. W.; Yu, J. Y.; Heath, J. R. Appl. Phys. Lett. 2000, 76, 2068.
26. Melosh, N. A.; Boukai, A.; Diana, F.; Gerardot, B.; Badolato, A.; Petroff, P. M.; Heath, J. R. Science 2003, 300, 112.
27. Beckman, R. A.; Johnston-Halperin, E.; Melosh, N. A.; Luo, Y.; Green, J. E.; Heath, J. R. J. Appl. Phys. 2004, 96, 5921.
28. Yablanovitch, E.; Allara, D. L.; Chang, C. C.; Gmitter, T.; Bright, T. B. Phys. Rev. Lett. 1986, 57, 249.
29. Sham, T. K.; Naftel, S. J.; Kim, P.-S. G.; Sammynaiken, R.; Tang, Y. H.; Coulthard, I.; Moewes, A.; Freeland, J. W.; Hu, Y.-F.; Lees, S. T. Phys. Rev. B 2004, 70, 045313/1.
30. Webb, L. J.; Lewis, N. S. J. Phys. Chem. B 2003, 107, 5404.
31. Bansal, A.; Lewis, N. S. J. Phys. Chem. B 1998, 102, 4058.
32. Haick, H.; Hurley, P. T.; Hochbaum, A. I.; Yang, P.; Lewis, N. S. J. Am. Chem. Soc. 2006, 128, 8990.
33. Terry, J.; Mo, R.; Wigren, C.; Cao, R. Y.; Mount, G.; Pianetta, P.; Linford, M. R.; Chidsey, C. E. D. Instrum. Methods. Phys. Res., Sect. B 1997, 133, 94.
34. Effenberger, F.; Gotz, G.; Bidlingmaier, B.; Wezstein, M. Angew. Chem., Int. Ed. 1998, 37, 2462.
35. Boukherroub, R.; Wayner, D. D. M. J. Am. Chem. Soc. 1999, 121, 11513.
36. Cicero, R. L.; Linford, M. R.; Chidsey, C. E. D. Langmuir 2000, 16, 5688.
37. Streifer, J. A.; Kim, H.; Nichols, B. M.; Hamers, R. J. Nanotechnology 2005, 16, 1868.
38. Jönsson, U.; et al. BioTechniques 1991, 11, 620.
39. Wang, D.; Sheriff, B. A.; Heath, J. R. Nano Lett. 2006, 6, 1096.
40. Duffy, D. C.; McDonald, J. C.; Schneller, O. J. A.; Whitesides, G. M. Anal. Chem. 1998, 70, 4974.
41. Unger, M. A.; Chou, H. P.; Thorsen, T.; Scherer. A.; Quake, S. R. Science 2000, 288, 113.
42. Bunimovich, Y. L.; Ge, G.; Beverly, K. C.; Ries, R. S.; Hood, L.; Heath, J. R. Langmuir 2004, 20, 10630.
43. Haber, J. A.; Lewis, N. S. J. Phys. Chem. B 2002, 106, 3639.
44. Himpsel, F. J.; McFeeley, F. R.; Taleb-Ibrahimi, A.; Yarmoff, J. A.; Hollinger, G. Phys. Rev. B 1988, 38, 6084.
45. Cui, Y.; Wei, Q.; Park, H.; Lieber, C. M. Science 2001, 293, 1289.
46. Hu, K.; Fan, F.; Bard, A. J.; Hillier, A. C. J. Phys. Chem. B 1997, 101, 8298.
47. Cui, Y.; Duan, X.; Hu, J.; Lieber, C. M. J. Phys. Chem. B 2000, 104, 5213.
48. Cheng, M. M.-C.; Cuda, G.; Bunimovich, Y. L.; Gaspari, M.; Heath, J. R.; Hill, H. D.; Mirkin, C. A.; Nijdam, A. J.; Terracciano, R.; Thundat, T.; Ferrari, M. Curr. Opin. Chem. Biol. 2006, 10, 11.
49. Beckman, R.; Johnston-Halperin, E.; Luo, Y.; Green, J. E.; Heath, J. R. Science 2005, 310, 465.
50. Stenberg, E.; Persson, B.; Roos, H.; Urbaniczky, C. J. Colloid Interface Sci. 1991, 143, 513
51. Peterson, A. W.; Heaton, R. J.; Georgiadis, R. M. Nucleic Acids Res. 2001, 29, 5163.
52. Yu, F.; Yao, D.; Knoll, W. Nucleic Acids Res. 2004, 32, e75.
53. Zhensj, G.; Patolsky, F.; Cui, Y.; Wang, W. U.; Lieber, C. M. Nat. Biotechnol. 2005, 23, 1294.
54. Lemeshko, S. V.; Powdrill, T.; Belosludtsev, Y. Y.; Hogan, M. Nucleic Acids Res. 2001, 29, 3051.
55. Zimmermann, M.; Delamarche, E.; Wolf, M.; Hunziker, P. Biomed. Microdevices 2005, 7, 99.
56. Fritz, J.; Cooper, E. B.; Gaudet, S.; Sorger, P. K.; Manalis, S. R. Proc. Nat. Acad. Sci. U.S.A. 2002, 99, 14142.
57. Nelson, B. P.; Grimsrud, T. E.; Liles, M. R.; Goodman, R. M.; Corn, R. M. Anal. Chem. 2001, 73, 1.
58. Nemanick, E. J. Chemical and Electrical Passivation of Single Crystal Silicon Surfaces through Covalently Bound Organic Monolayers; Ph.D. Thesis, California Institute of Technology, 2005.
59. Rohde, R. D.; Agnew, H. D.; Yeo, W.-S.; Bailey, R. C.; Heath, J. R. J. Am. Chem. Soc. 2006, 128, 9518.