Unravelling DNA

Contemporary Physics

Volumn 45, Issue 4, 2004, Pages 277-302

  Conroy, R S ^a   Danilowicz, C ^a  

^a HARVARD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 3142761138     PISSN: 00107514     EISSN: None     Source Type: Journal    
DOI: 10.1080/00107510410001676786     Document Type: Review

References (200)

1. Watson, J. D., and Crick, F. H. C., 1953, Nature, 171, 737.
2. Sinden, R. R., 1994, DNA Structure and Function (San Diego: Academic Press).
3. Ha, T., Enderle, Th., Ogletree, D. F., Chemla, D. S., Selvin, P., and Weiss, S., 1996, Proc. Nat. Acad. Sci. USA, 93, 624.
4. Ha, T., Zhuang, X., Kim, H. D., Orr, J. W., Williamson, J. R., and Chu, S., 1999, Proc. Nat. Acad. Sci. USA, 96, 9077.
5. Xie, X. S., 2002, J. Chem. Phys., 117, 11024.
6. Skinner, J., and Moerner, W. E., 1996, J. Phys. Chem., 100, 13521.
7. Nakamura, H., and Karube, I., 2003, Anal. Bioanal. Chem., 377, 446.
8. Hendrickson, W. A., 1995, Phys. Today, 48(11), 42.
9. Markelz, A. G., Roitberg, A., and Heilweil, E. J., 2000, Chem. Phys. Lett., 320(1-2), 42.
10. Yu, G. F., Coin, E. A., Schoenbach, K. H., Gellerman, M., Fox, P., Rec, L., Beebe, S. J., and Liu, S. G., 2002, IEEE Trans. Plasma Sci., 30, 1489.
11. Ermolina, I., Morgan, H., Green, N. G., Milner, J. J., and Feldman, Y., 2003, Biochim. Biophys. Acta, 1622(1), 57.
12. Zakharova, S. S., Jesse, W., Backendorf, C., Egelhaaf, S. U., Lapp, A., and van der Maarel, J. R. C., 2002, Biophys. J., 83, 1106.
13. Hayat, M. A., 2000, Principles and Techniques of Electron Microscopy: Biological Applications, 4th edn (Cambridge: Cambridge University Press).
14. Morris, V. J., Kirby, A.R., and Gunning, A. P., 2000, Atomic Force Microscopy for Biologists (London: Imperial College Press).
15. Bezanilla, M., Drake, B., Nudler, E., Kashlev, M., Hansma, P. K., and Hansma, H. G., 1994, Biophys. J., 67, 2454.
16. Hansma, H. G., Browne, K. A., Bezanilla, M., and Bruice, T. C., 1994, Biochemistry, 33, 8436.
17. Kasas, S., Thomson, N. H., Smith, B. L., Hansma, H. G., Zhu, X., Guthold, M., Bustamante, C., Kool, E. T., Kashlev, M., and Hansma, P. K., 1997, Biochemistry, 36, 461.
18. Hohmura, K. I., Itokazu, Y., Yoshimura, S. H., Mizuguchi, G., Masamura, Y.-S., Takeyasu, K., Shiomi, Y., Tsurimoto, T., Nishijima, H., Akita, S., and Nakayama, Y., 2000, J. Electron. Microsc., 49, 415.
19. Bard, A. J., Cliffel, D. E., Demaille, C., Fan, F. R. F., and Tsionsky, M., 1997, Ann. Chim., 87, 1531
20. Bard, A. J., and Fan, F-R. F., 1996, Acc. Chem. Res., 29, 572.
21. Macpherson, J. V., Beeston, M. A., Unwin, P. R., Hughes, N. P., and Littlewood, D., 1995, Langmuir, 11, 3959.
22. Gonsalves, M., Barker, A. L., Macpherson, J. V., Unwin, P. R., O'Hare, D., and Winlove, C. P., 2000, J. Biophys., 78, 1578.
23. Cai, W. B., Ren, B., Li, X. Q., She, C. X., Liu, F. M., Cai, X. W., and Tian Z. Q., 1998, Surf. Sci., 406(1-3), 9.
24. Sidles, J. A., Garbini, J. L., Bruland, K. J., Rugar, D., Zuger, O., Hoen, S., and Yannoni, C. S., 1995, Rev. Mod. Phys., 67(1), 249.
25. Brouwer, A. C. J., Groenen, E. J. J., and Schmidt, J., 1998, Phys. Rev. Lett., 80, 3944.
26. Beebe, T. P., Wilson, T. E., Ogletree, D. F., Katz, J. E., Balhorn, R., Salmeron, M. B., and Siekhaus, W. J., 1989, Science, 243, 370.
27. Dunlap, D. D., and Bustamante, C., 1989, Nature, 342, 204.
28. Arscott, P. G., Lee, G., Bloomfield, V. A., and Evans, D. F., 1989, Nature, 339, 484.
29. Kasianowicz, J. J., Brandin, E., Branton, D., and Deamer, D. W., 1996, Proc. Nat. Acad. Sci. USA, 93, 12770.
30. Storm, A. J., Chen, J. H., Ling, X. S., Zandbergen, H. W., and Dekker, C., 2003, Nature Materials (London), 2, 537.
31. Howorka, S., Cheley, S., and Bayley, H., 2001, Nat. Biotechnol., 19, 636.
32. Vercoutere, W., Winters-Hilt S., Olsen, H., Deamer, D., Haussler, D., and Akeson, M., 2001, Nat. Biotechnol., 19, 248.
33. Gao, C., Wei, T., Duewer, F., Lu, Y. L., and Xiang, X. D., 1997, Appl. Phys. Lett., 71, 1872.
34. Kim, J., Kim, M., Kim, H., Song, D., Lee, K., and Friedman, B., 2003, Appl. Phys. Lett., 83, 1026.
35. Betzig, E., and Trautman, J. K., 1992, Science, 257, 189.
36. Xie, X. S., and Dunn, R. C., 1994, Science, 265, 361.
37. Betzig, E., Chichester, R. J., Lanni, F., and Taylor, D. L., 1993, Bioimaging, 1, 129.
38. Deckert, V., Zeizel, D., Zenobi, R., and Vo-Dinh, T., 1998, Anal. Chem., 70, 2646.
39. Kim, J. M., Ohtani, T., Sugiyama, S., Hirose, T., and Muramatsu, H., 2001, Anal. Chem., 73, 5984.
40. Ambrose, W. P., Goodwin, P. M., Martin, J. C., and Keller, R. A., 1994, Science, 265, 364.
41. Hecht, B., Bielfeldt, H., Inouye, Y., Pohl, D. W., and Novotny, L., 1997, J. Appl. Phys., 81, 2492.
42. Deckert, V., Zeizel, D., and Zenobi, R., 1998, Anal. Chem., 70, 2646.
43. Axelrod, D., Burghardt, T. P., and Thompson, N. L., 1984, Annu. Rev. Biophys. Bioeng., 13, 247.
44. Hill, E. K., and deMello, A. J., 2000, The Analyst, 125, 1033.
45. Funatsu, T., Harada, Y., Tokunaga, M., and Yanagida, T., 1995, Nature, 374, 555.
46. Merrifield, C. J., Feldman, M. E., Wan, L., and Almers, W., 2002, Nature Cell Biol., 4, 691.
47. Sako, Y., Minoghchi, S., and Yanagida, T., 2000, Nature Cell Biol., 2, 168.
48. Seizenberger, G., Reid, M. U., Endress, T., Buning, H., Hallek, M., and Brauchle, C., 2001, Science, 294, 1929.
49. Abel, A. P., Weller, M. G., Duveneck, G. L., Ehrat, M., and Widner, H. W., 1996, Anal. Chem., 68, 2905.
50. Harada, Y., Funatsu, T., Murakami, K., Nonoyama, Y., Ishihama, A., and Yanagida, T., 1999, Biophys. J., 76, 709.
51. Schmidt, P. M., Lehmann, C., Matthes, E., and Bier, F. F., 2002, Biosens. Bioelectron., 17, 1081.
52. He, L., Musick, M. D., Nicewarner, S. R., Salinas, F. G., Benkovic, S. J., Natan, M. J., and Keating, C. D., 2000, J. Am. Chem. Soc., 122, 9071.
53. Frutos, A. G., Brockman, J. M., and Corn, R. M., 2000, Langmuir, 16, 2192.
54. Jung, L. S., Shumaker-Parry, J. S., Campbell, C. T., Yee, S. S., and Gelb, M. H., 2000, J. Am. Chem. Soc., 122, 4177.
55. Nakatani, K., Sando, S., and Saito, I., 2001, Nat. Biotechnol., 19, 51.
56. Peterlinz, K. A., Georgiadis, R. M., Herne, T. M., and Tarlov, M. J., 1997, J. Am. Chem. Soc., 119, 3401.
57. García-Vidal, F. J., Pitarke, J. M., and Pendry, J. B., 1998, Phys. Rev. A, 58, 6785.
58. Vo-Dinh, T., Stokes, D. L., Griffin, G. D., Volkan, M., Kim, U. J., and Simon, M. I., 1999, J. Raman Spectrosc., 30, 785.
59. El Amri, C., Baron, M. H., and Maurel, M. C., 2003, Spectrosc. Acta. A, 59, 2645.
60. Kneipp, K., Haka, A. S., Kneipp, H., Badisadegan, K., Yoshizawa, N., Boone, C., Shafer-Peltier, K. E., Motz, J. T., Dasari, R. R., and Feld, M. S., 2002, Appl. Spectrosc., 56(2), 150.
61. Kankia, B. I., Buckin, V., and Bloomfield, V. A., 2001, Nucleic Acids Res., 29, 2795.
62. Hammermann, M., Steinmaier, C., Wedemann, G., Chirico, G., and Langowski, J., 1997, Biophys. J., 73, 2674.
63. Bao, P., Frutos, A. G., Greef, C., Lahiri, J., Muller, U., Peterson, T. C., Warden, L., and Xie, X., 2002, Anal. Chem., 15, 1792.
64. Miyawaki, A., Sawano, A., and Kogure, T., 2003, Nat. Cell. Biol., 5, S1.
65. Chan, W. C. W., Maxwell, D. J., Gao, X. H., Bailey, R. E., Han, M. Y., and Nie, S. M., 2002, Curr. Opin. Biotechnol., 13(1), 40.
66. Tavare, J. M., Fletcher, L. M., and Welsh, G. I., 2001, J. Endocrinol., 170, 297.
67. Moerner, W. E., and Kador, L., 1989, Phys. Rev. Lett., 62, 2535.
68. Shera, E. B., Seitzinger, N. K., Davis, L. M., Keller, R. A., and Soper, S. A., 1990, Chem. Phys. Lett., 174, 553.
69. Lakowicz, J. R., 1999, Principles of Fluorescence Spectroscopy, 2nd edn (New York: Plenum Press).
70. Thompson, N. L., Lieto, A. M., and Allen, N. W., 2002, Curr. Opin. Struct. Biol., 12, 634.
71. Murphy, D. B., 2001, Fundamentals of Light Microscopy and Electronic Imaging, 1st edn (New York: Wiley-Liss).
72. Pawley, J. B., 1995, Handbook of Biological Confocal Microscopy, 2nd edn (New York: Plenum Press).
73. Stephens, D. J., and Allen, V. J., 2003, Science, 300, 82.
74. Zoumi, A., Yeh, A., and Tromberg, B. J., 2002, Proc. Natl. Acad. Sci., 99, 11014.
75. Zipfel, W. R., Williams, R. M., and Webb, W. W., 2003, Nat. Biotechnol., 21, 1368.
76. Denk, W., Strickler, J. H., and Webb, W. W., 1990, Science, 248, 73.
77. Jamin, N., Dumas, P., Moncuit, J., Fridman, W. H., Teillaud, J. L., Carr, G. L., and Williams, G. P., 1998, Proc. Natl. Acad. Sci., 95, 4837.
78. Puppels, G. J., Schut, T. C. B., Sijtsema, N. M., Grond, M., Maraboeuf, F., Degruaw, C. G., Figdor, C. G., and Greve, J., 1995, J. Mol. Struct., 347, 477.
79. Cheng, J. X., Jia, Y. K., Zheng, G. F., and Xie, X. S., 2002, Biophys. J., 83(1), 502.
80. Hell, S., and Stelzer, E. H. K., 1992, Opt. Commun., 93, 277.
81. Hell, S. W., and Kroug, M., 1995, Appl. Phys. B, 60, 495.
82. Westphal, V., Kastrup, L., and Hell, S. W., 2003, Appl. Phys. B, 77, 377.
83. Enger, A., Jakobs, S., and Hell, S. W., 2002, Proc. Natl. Acad. Sci., 99, 3370.
84. Straub, M., Lodemann, P., Holyroyd, P., Jahn, R., and Hell, S. W., 2000, Eur. J. Cell Biol., 79, 726.
85. Bensimon, A., Simon, A., Chiffaudel, A., Croquette, V., Heslot, F., and Bensimon, D., 1994, Science, 265, 2096.
86. Keller, D., Swigon, D., and Bustamante, C., 2003, Biophys. J., 84, 733.
87. Ishijima, A., Kojima, H., Higuchi, H., Harada, Y., Funatsu, T., and Yanagida, T., 1996, Biophys. J., 70, 383.
88. Allen, S., Rigby-Singleton, S. M., Harris, H., Davies, M. C., and O'Shea, P., 2003, Biochem. Soc. Trans., 31, 1052.
89. Hansma, H. G., Pietrasanta, L. I., Auerbach, I. D., Sorenson, C., Golan, R., and Holden, P. A., 2000, J. Biomater. Sci., 11, 675.
90. Kishino, A., and Yanagida, T., 1988, Nature, 334, 74.
91. Cluzel, Ph., Lebrun, A., Heller, C., Lavery, R., Viovy, J.-L., Chatenay, D., and Caron, F., 1996, Science, 271, 792.
92. Bustamante, C., Bryant, Z., and Smith, S. B., 2003, Nature, 421, 423.
93. Bockelmann, U., Essevaz-Roulet, B., and Heslot, F., 1998, Phs. Rev. E, 58, 2386.
94. van Oijen, A. M., Blainey, P. C., Crampton, D. J., Richardson, C. C., Ellenberger, T., and Xie, X. S., 2003, Science, 301, 1235.
95. Selvaganapathy, P. R., Carlen, E.T., and Mastrangelo, C. H., 2003, Proc. IEEE, 91, 954.
96. Dai, J. H., Ito, T., Sun, L., and Crooks, R. M., 2003, J. Am. Chem. Soc., 125, 13026.
97. Buchholz, B. A., Shi, W., and Barron, A. E., 2002, Electrophoresis, 23, 1398.
98. Gourley, P. L., 2003, J. Phys. D, 36, R228.
99. Rieseberg, M., Kasper, C., Reardon, K. F., and Scheper, T., 2001, Appl. Microbiol. Biotechnol., 56, 350.
100. Wedemeyer, N., and Potter, T., 2001, Clin. Genetics, 60(1), 1.
101. Ashkin, A., 1970, Phys. Rev. Lett., 24, 156.
102. Gittes, F., and Schmidt, G. F., 1998, Methods Cell Biol., 55, 129.
103. Lang, M. J., and Block, S. M., 2003, Am. J. Phys., 71, 201.
104. Molloy, J. E., and Padgett, M. J., 2002, Contemp. Phys., 43, 241.
105. Sheetz, M. P. (ed.), 1998, Methods in Cell Biology, Vol. 55: Laser Tweezers in Cell Biology (San Diego: Academic Press).
106. Smith, S. P., Bhalotra, S. R., Brody, A., Brown, B. L., Boyda, E. K., and Prentiss, M., 1999, Am. J. Phys., 67, 26.
107. Uhlén, M., Hornes, E., and Olsvik, O. (eds), 1994, Advances in Biomagnetic Separation (Natwick, MA: Eaton Publishing Co.).
108. Ziemann, F., Rädler, J., and Sackmann, E., 1994, Biophys. J., 66, 2210.
109. Bausch, A. R., Ziemann, F., Boulbitch, A. A., Jacobson, K., and Sackmann, E., 1998, Biophys. J., 75, 2038.
110. Bausch, A. R., Móller, W., and Sackmann, E., 1999, Biophys. J., 76, 573.
111. Bausch, A. R., Hellerer, U., Essler, M., Aepfelbacher, M., and Sackmann, E., 2001, Biophys. J., 80, 2649.
112. Haber, C., and Wirtz, D., 2000, Rev. Sci. Inst., 71, 4561.
113. Danilowicz, C., Coljee, V. W., Bouzigues, C., Lubensky, D. K., Nelson, D. R., and Prentiss, M., 2003, Proc. Natl. Acad. Sci. USA, 100, 1694.
114. Hosu, B. G., Jakab, K., Banki, P., Toth, F. I., and Forgacs, G., 2003, Rev. Sci. Inst., 74, 4158.
115. Assi, F., Jenks, R., Yang, J., Love, C., and Prentiss, M., 2002, J. Appl. Phys., 92, 5584.
116. Strick, T. R., Allemand, J. F., Bensimon, D., Lavery, R., and Croquette, V., 1999, Physica A, 263, 392.
117. Wang, N., and Ingber, D. E., 1995, Biochem. Cell Biol., 73, 327.
118. Barbic, M., 2002, J. Magn. Magn. Mater., 249(1-2), 357.
119. Takahashi, T., Dimitrov, A. S., and Nagayama, K., 1996, J. Phys. Chem., 100, 3157.
120. Marini, J. C., Levene, S. D., Crothers, D. M., and Englund, P. T., 1982, Proc. Natl. Acad. Sci. USA, 79, 7664.
121. de Gennes, P. G., 1971, J. Chem. Phys., 55, 572.
122. Han, J., and Craighead, H. G., 2000, Science, 288, 1026.
123. Turner, S. W. P., Cabodi, M., and Craighead, H. G., 2002, Phys. Rev. Lett., 88, 128103.
124. Kaji, N., Ueda, M., and Baba, Y., 2002, Biophys. J., 82, 335.
125. Ferree, S., and Blanch, H. W., 2003, Biophys. J., 85, 2539.
126. Georgakilas, A. G., Konsta, A. A., Haveles, K. S., and Sideris, E. G., 1997, IEEE Dielectric and Electrical Insulation Society International Symposium on Electrets, 5(1), 26.
127. Facer, G. R., Notterman, D. A., and Sohn, L. L., 2001, Appl. Phys. Lett., 78, 996.
128. Bonincontro, A., Bultrini, E., Onori, G., and Risuleo, G., J. Non-Cryst. Solids, 307-310, 863.
129. Pethig, R., and Kell, D. B., 1987, Phys. Med. Biol., 32, 933.
130. Beratan, D. N., Priyadarshy, S., and Risser, S. M., 1997, Chem. Biol., 4(1), 3.
131. Murphy, C. J., Arkin, M. R., Jenkins, Y., Ghatlia, N. D., Bossmann, S. H., Turro, N. J., and Barton, J. K., 1993, Science, 262, 1025.
132. Brun, A. M., and Harriman, A., 1994, J. Am. Chem. Soc., 116, 10383.
133. Lewis, F. D., Letsinger, R. L., and Wasielewski, M. R., 2001, Acc. Chem. Res., 34, 159.
134. Fink, H. W., and Schonenberger, C., 1999, Nature, 398, 407.
135. Park, S. J., Taton, T. A., and Mirkin, C. A., 2002, Science, 295, 1503.
136. Drummond, T. G., Hill, M. G., and Barton, J. K., 2003, Nat. Biotechnol., 21, 1192.
137. Cui, D. X., and Gao, H. J., 2003, Biotechnol. Prog., 19, 683.
138. Boon, E. M., Livingston, A. L., Chmiel, N. H., David, S. S., and Barton, J. K., 2003, Proc. Natl. Acad. Sci., 100, 12543.
139. Bloomfield, V. A., 2000, Biopolymers, 54, 168.
140. Perkins, T. T., Smith, D. E., Larson, R. G., and Chu, S., 1995, Science, 268, 83.
141. Shore, D., and Baldwin, R. L., 1983, J. Mol. Biol., 170, 957.
142. Taylor, W. H., and Hagerman, P. J., 1990, J Mol. Biol., 212, 363.
143. Marko, J., and Siggia, E. B., 1995, Macromolecules, 28, 8759.
144. Bouchiat, C., Wang, M.D., Allemand, J. F., Strick, T., Block, S. M., and Croquette, V., 1999, Biophys. J., 76, 409.
145. McCammon, J. A., and Harvey, S. C., 1987, Dynamics of Proteins and Nucleic Acids (Cambridge: Cambridge University Press).
146. Harris, S., 2004, Contemp. Phys., 45, 11.
147. Smith, S. B., Finzi, L., and Bustamante, C., 1992, Science, 258, 1122.
148. Smith, S. B., Cui, Y., and Bustamante, C., 1996, Science, 271, 795.
149. Bustamante, C., Smith, S. B., Liphardt, J., and Smith, D., 2000, Curr. Opin. Struct. Biol., 10, 279.
150. Williams, M. C., Rouzina, I., and Bloomfield, V. A., 2002, Acc. Chem. Res., 35, 159.
151. Essevaz Roulet, B., Bockelmann, U., and Heslot, F., 1997, Proc. Natl. Acad. Sci. USA, 94, 11935.
152. Bockelmann, U., Thomen, P., Essevaz Roulet, B., Viasnoff, V., and Heslot, F., 2002, Biophys. J., 82, 1537.
153. Bockelmann, U., Essevaz Roulet, B., and Heslot, F., 1998, Phys. Rev. E, 58, 2386.
154. Liphardt, J., Onoa, B., Smith, S. B., Tinoco, I., and Bustamante, C., 2001, Science, 292, 733.
155. Lubensky, D. K., and Nelson, D. R., 2000, Phys. Rev. Lett., 85, 1572.
156. Lubensky, D. K., and Nelson, D. R., 2002, Phys. Rev. E, 65, 031917.
157. Strick, T. R., Allemand, J. F., Bensimon, D., Lavery, R., and Croquette, V., 1999, Physica A, 263, 392.
158. Strick, T. R., Allemand, J. F., Bensimon, D., and Croquette, V., 1998, Biophys. J., 74, 2016.
159. Strick, T. R., Croquette, V., and Bensimon, D., 2000, Nature, 404, 902.
160. Vologodskaia, M., and Vologodskii, A., 2002, J. Mol. Biol., 317, 205.
161. Nelson, P., 1999, Proc. Nat. Acad. Sci., 96, 14342.
162. Trifonov, E. N., Tan, R. K. Z., and Harvey, S. C., 1988, Static persistence length of DNA. In DNA Bending and Curvature, edited by W. K. Olson, M. H. Sarma, R. H. Sarma and M. Sundaralingam (New York: Adenine Press), p. 243.
163. Diekmann, S., 1987, DNA curvature. In Nucleic Acids and Molecular Biology, Vol. 1, edited by F. Eckstein and D. Lilley (Berlin: Springer), p. 138.
164. Sprous, D., Zacharias, W., Wood, Z. A., and Harvey, S. C., 1995, Nucl. Acids Res., 23, 1816.
165. Izaacs, R. J., and Spielmann, H. P., 2001, J. Mol. Biol., 307, 525.
166. Beveridge, D. L., and McConnell, K. J., 2000, Curr. Opin. Struct. Biol., 10, 182; Olson, W. K., and Zhurkin, V. B., 2000, Curr. Opin. Struct. Biol., 10, 286.
167. Beveridge, D. L., and McConnell, K. J., 2000, Curr. Opin. Struct. Biol., 10, 182; Olson, W. K., and Zhurkin, V. B., 2000, Curr. Opin. Struct. Biol., 10, 286.
168. Schroeder, C. M., Babcock, H. P., Shaqfeh, E. S. G., and Chu, S., 2003, Science, 301, 1515.
169. Rouzina, J., and Bloomfield, V. A., 2001, Biophys. J., 80, 894.
170. Williams, M. C., Wenner, J. R., Rouzina, I., and Bloomfield, V. A., 2001, Biophys. J., 80, 874.
171. Williams, M. C., Wenner, J. R., Rouzina, I., and Bloomfield, V. A., 2001, Biophys. J., 80, 1932.
172. Pant, K., Karpel, R. L., and Williams, M. C., 2003, J. Mol. Biol., 327, 571.
173. Clausen-Schaumann, H., Rief, M., Tolksdorf, C., and Gaub, H. E., 2000, Biophys. J., 78, 1997.
174. Baumann, C. G., Smith, S. B., Bloomfield, V. A., and Bustamante, C., 1997, Proc. Natl. Acad. Sci. USA, 94, 6185.
175. Baumann, C. G., Bloomfield, V. A., Smith, S. B., Bustamante, C., Wang, M. D., and Block, S. M., 2000, Biophys. J., 78, 1965.
176. Alberts, B., 2003, Nature, 421, 431.
177. Wuite, G. J. L., Smith, S. B., Young, M., Keller, M., Keller, D., and Bustamante, C., 2000, Nature, 404, 103.
178. Maier, B., Bensimon, D., and Croquette, V., 2000, Proc. Natl. Acad. Sci. USA, 97, 12002.
179. Yin, H., Wang, M. D., Svoboda, K., Landlick, R., Block, S. M., and Gelles, J., 1995, Science, 270, 1653.
180. Wang, M. D., Schnitzer, M. J., Yin, H., Landick, R., Gelles, J., and Block, S. M., 1998, Science, 282, 902.
181. Caruthers, J. M., and McKay, D. B., 2002, Curr. Opin. Struct. Biol., 12, 123.
182. Ha, T., Rasnik, I., Babcock, H. P., Gauss, G. H., Lohman, T. M., and Chu, S., 2002, Nature, 419, 638.
183. Bhattacharjee, S. M., and Seno, F. J., 2003, J. Phys. A: Math. Gen., 36, L181.
184. Taylor, A. F., and Smith, G. R., 2003, Nature, 423, 889.
185. Allemand, J. F., Bensimon, D., Lavery, R., and Croquette, V., 1998, Proc. Natl. Acad. Sci. U S A, 95, 14152.
186. Dekker, N. H., Viard, T., Bouthier de La Tour, C., Duguet, M., Bensimon, D., and Croquette, V., 2002, Proc. Natl. Acad. Sci USA, 99, 12126.
187. van Oijen, A. M., Blainey, P. C., Crampton, D. J., Richardson, C. C., Ellenberger, T., and Xie, X. S., 2003, Science, 301, 1235.
188. Perkins, T. T., Dalal, R. V., Mitsis, P. G., and Block, S. M., 2003, Science, 301, 1914.
189. Leuba, S. H., Karymov, M. A., Tomschik, M., Ramjit, R., Smith, P., and Zlanatova, J., 2003, Proc. Natl. Acad. Sci. USA, 100, 495.
190. Koch, S. J., Shudrovsky, A., Jantzen, B. C., and Wang, M. D., 2002, Biophys. J., 83, 1098.
191. Cui, Y., and Bustamante, C., 2000, Proc. Natl. Acad. Sci. USA, 97, 127.
192. Brower-Towland, B. D., Smith, C. L., Yeh, R. C., Lis, J. T., Peterson, C. L., and Wang, M. D., 2002, Proc. Natl. Acad. Sci. USA, 99, 1960.
193. Smith, D. E., Tans, S. J., Smith, S. B., Grimes, S., Anderson, D. L., and Bustamante, C., 2001, Nature, 413, 748.
194. Tzilil, S., Kindt, J. T., Gelbart, W. M., and Ben-Sahul, A., 2003, Biophys. J., 84, 1616.
195. Lakadamyali, M., Rust, M. J., Babcock, H. P., and Zhuang, X., 2003, Proc. Natl. Acad. Sci. USA, 100, 9280.
196. Seeman, N. C., 2003, Nature, 421, 427.
197. Seeman, N. C., 2003, Biochemistry, 42, 7259.
198. Eckardt, L. H., Naumann, K., Pankau, W. M., Rein, M., Schweitzer, M., Windhab, N., and von Kiedrowski, G., 2002, Nature, 420, 286.
199. Keren, K., Berman, R. S., Buchstab, E., Sivan, U., and Braun, E., 2003, Science, 302, 1380.
200. Created using CHIME from Harold Martinson's website: http:// www.biochemistry.ucla.edu/biochem/Faculty/Martinson_Chime/