메뉴 건너뛰기




Volumn 421, Issue 6921, 2003, Pages 423-427

Ten years of tension: Single-molecule DNA mechanics

Author keywords

[No Author keywords available]

Indexed keywords

CONSTRAINT THEORY; CYTOLOGY; DNA; PROTEINS;

EID: 85015087906     PISSN: 00280836     EISSN: None     Source Type: Journal    
DOI: 10.1038/nature01405     Document Type: Review
Times cited : (1134)

References (50)
  • 1
    • 84982060514 scopus 로고
    • Röntgenuntersushung gelöster fagenmoleküle
    • Kratky, O. & Porod, G. Röntgenuntersushung gelöster Fagenmoleküle. Rec. Tray. Chim. Pays-Bas 68, 1106-1123 (1949).
    • (1949) Rec. Tray. Chim. Pays-Bas , vol.68 , pp. 1106-1123
    • Kratky, O.1    Porod, G.2
  • 2
    • 0016382119 scopus 로고
    • Flexibility of DNA
    • Schellman, J. A. Flexibility of DNA. Biopolymers 13, 217-226 (1974).
    • (1974) Biopolymers , vol.13 , pp. 217-226
    • Schellman, J.A.1
  • 3
    • 0024424261 scopus 로고
    • Functional replacement of a protein-induced bend in a DNA recombination site
    • Goodman, S. D. & Nash, H. D. Functional replacement of a protein-induced bend in a DNA recombination site, Nature 341, 251-254 (1989).
    • (1989) Nature , vol.341 , pp. 251-254
    • Goodman, S.D.1    Nash, H.D.2
  • 4
    • 0027314409 scopus 로고
    • Protein-induced bending as a transcriptional switch
    • Perez-Martin, J. & Espinosa, M. Protein-induced bending as a transcriptional switch. Science 260, 805-807 (1993).
    • (1993) Science , vol.260 , pp. 805-807
    • Perez-Martin, J.1    Espinosa, M.2
  • 5
    • 0028919503 scopus 로고
    • Pre-bending of a promoter sequence enhances affinity for the TATA-binding factor
    • Parvin, J. D., McCormick, R. J., Sharp, P. A. & Fisher, D. E. Pre-bending of a promoter sequence enhances affinity for the TATA-binding factor. Nature 373, 724-727 (1995).
    • (1995) Nature , vol.373 , pp. 724-727
    • Parvin, J.D.1    McCormick, R.J.2    Sharp, P.A.3    Fisher, D.E.4
  • 6
    • 0028597967 scopus 로고
    • DNA bending by asymmetric phosphate neutralization
    • Strauss, J. K. & Maher, L. J. III DNA bending by asymmetric phosphate neutralization. Science 266, 1829-1834 (1994).
    • (1994) Science , vol.266 , pp. 1829-1834
    • Strauss, J.K.1    Maher L.J. III2
  • 8
    • 0026495432 scopus 로고
    • Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads
    • Smith, S. B., Finzi, L. & Bustamante, C. Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads. Science 258, 1122-1126 (1992).
    • (1992) Science , vol.258 , pp. 1122-1126
    • Smith, S.B.1    Finzi, L.2    Bustamante, C.3
  • 9
    • 0030024985 scopus 로고    scopus 로고
    • Overstretching B-DNA the elastic response of individual double-stranded and single-stranded DNA molecules
    • Smith, S. B., Cui, Y. & Bustamante, C. Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules. Science 271, 795-799 (1996).
    • (1996) Science , vol.271 , pp. 795-799
    • Smith, S.B.1    Cui, Y.2    Bustamante, C.3
  • 11
    • 0028071373 scopus 로고
    • Entropic elasticity of lambda-phage DNA
    • Bustamante, C., Marko, J. F., Siggia, E. D. & Smith, S. Entropic elasticity of lambda-phage DNA. Science 265, 1599-1600 (1994).
    • (1994) Science , vol.265 , pp. 1599-1600
    • Bustamante, C.1    Marko, J.F.2    Siggia, E.D.3    Smith, S.4
  • 12
    • 0034594940 scopus 로고    scopus 로고
    • Single-molecule studies of the effect of template tension on T7 DNA polymerase activity
    • Wuite, G. J., Smith, S. B., Young, M., Keller, D. & Bustamante, C. Single-molecule studies of the effect of template tension on T7 DNA polymerase activity. Nature 404, 103-106 (2000).
    • (2000) Nature , vol.404 , pp. 103-106
    • Wuite, G.J.1    Smith, S.B.2    Young, M.3    Keller, D.4    Bustamante, C.5
  • 13
    • 0034710990 scopus 로고    scopus 로고
    • Replication by a single DNA polymerase of a stretched single-stranded DNA
    • Maier, B., Bensimon, D. & Croquette, V. Replication by a single DNA polymerase of a stretched single-stranded DNA. Proc. Natl Acad. Sci. USA 97, 12002-12007 (2000).
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 12002-12007
    • Maier, B.1    Bensimon, D.2    Croquette, V.3
  • 15
    • 0034690257 scopus 로고    scopus 로고
    • Single-molecule analysis of DNA uncoiling by a type II topoisomerase
    • Strick, T. R., Croquette, V. & Bensimon, D. Single-molecule analysis of DNA uncoiling by a type II topoisomerase. Nature 404, 901-904 (2000).
    • (2000) Nature , vol.404 , pp. 901-904
    • Strick, T.R.1    Croquette, V.2    Bensimon, D.3
  • 16
    • 0037126054 scopus 로고    scopus 로고
    • The mechanism of type 1A topoisomerases
    • Dekker, N. H. et al. The mechanism of type 1A topoisomerases. Proc. Natl Acad. Sci. USA 99, 12126-12131 (2002).
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 12126-12131
    • Dekker, N.H.1
  • 17
    • 0034669232 scopus 로고    scopus 로고
    • Preferential relaxation of positively supercoiled DNA by E. coli topoisomerase IV in single-molecule and ensemble measurements
    • Crisona, N. J., Strick, T. R., Bensimon, D., Croquette, V. & Cozzarelli, N. R. Preferential relaxation of positively supercoiled DNA by E. coli topoisomerase IV in single-molecule and ensemble measurements. Genes Dev. 14, 2881-2892 (2000).
    • (2000) Genes Dev. , vol.14 , pp. 2881-2892
    • Crisona, N.J.1    Strick, T.R.2    Bensimon, D.3    Croquette, V.4    Cozzarelli, N.R.5
  • 19
    • 0036198476 scopus 로고    scopus 로고
    • Unzipping DNA with optical tweezers: High sequence sensitivity and force flips
    • Bockelmann, U., Thomen, P., Essevaz-Roulet, B., Viasnoff, V. & Heslot, F. Unzipping DNA with optical tweezers: high sequence sensitivity and force flips. Biophys. J. 82, 1537-1553 (2002).
    • (2002) Biophys. J. , vol.82 , pp. 1537-1553
    • Bockelmann, U.1    Thomen, P.2    Essevaz-Roulet, B.3    Viasnoff, V.4    Heslot, F.5
  • 20
    • 0035905687 scopus 로고    scopus 로고
    • Processive translocation and DNA unwinding by individual RecBCD enzyme molecules
    • Bianco, P. R. et al. Processive translocation and DNA unwinding by individual RecBCD enzyme molecules. Nature 409, 374-378 (2001).
    • (2001) Nature , vol.409 , pp. 374-378
    • Bianco, P.R.1
  • 21
    • 0035905807 scopus 로고    scopus 로고
    • χ-sequence recognition and DNA translocation by single RecBCD helicase/nuclease molecules
    • chi;-Sequence recognition and DNA translocation by single RecBCD helicase/nuclease molecules. Nature 409, 370-374 (2001).
    • (2001) Nature , vol.409 , pp. 370-374
    • Dohoney, K.M.1    Gelles, J.2
  • 22
    • 0035997065 scopus 로고    scopus 로고
    • Probing protein-DNA interactions by unzipping a single DNA double helix
    • Koch, S. J., Shundrovsky, A., Jantzen, B. C. & Wang, M. D. Probing protein-DNA interactions by unzipping a single DNA double helix. Biophys J. 83, 1098-1105 (2002).
    • (2002) Biophys J. , vol.83 , pp. 1098-1105
    • Koch, S.J.1    Shundrovsky, A.2    Jantzen, B.C.3    Wang, M.D.4
  • 23
    • 0029416931 scopus 로고
    • Transcription against an applied force
    • Yin, H. et al. Transcription against an applied force. Science 270, 1653-1657 (1995).
    • (1995) Science , vol.270 , pp. 1653-1657
    • Yin, H.1
  • 24
    • 0032582494 scopus 로고    scopus 로고
    • Force and velocity measured for single molecules of RNA polymerase
    • Wang, M. D. et al. Force and velocity measured for single molecules of RNA polymerase. Science 282, 902-907 (1998).
    • (1998) Science , vol.282 , pp. 902-907
    • Wang, M.D.1
  • 25
    • 0034737593 scopus 로고    scopus 로고
    • Single-molecule study of transcriptional pausing and arrest by E. coli RNA polymerase
    • Davenport, R. I., Wuite, G. J., Landick, R. & Bustamante, C. Single-molecule study of transcriptional pausing and arrest by E. coli RNA polymerase. Science 287, 2497-2500 (2000).
    • (2000) Science , vol.287 , pp. 2497-2500
    • Davenport, R.I.1    Wuite, G.J.2    Landick, R.3    Bustamante, C.4
  • 26
    • 0343415156 scopus 로고    scopus 로고
    • The way things move: Looking under the hood of molecular motor proteins
    • Vale, R. D. & Milligan, R. A. The way things move: looking under the hood of molecular motor proteins. Science 288, 88-95 (2000).
    • (2000) Science , vol.288 , pp. 88-95
    • Vale, R.D.1    Milligan, R.A.2
  • 27
    • 0037015022 scopus 로고    scopus 로고
    • Using mechanical force to probe the mechanism of pausing and arrest during continuous elongation by Escherichia coli RNA polymerase
    • Forde, N. R., Izhaky, D., Woodcock, G. R., Wuite, G. J. & Bustamante, C. Using mechanical force to probe the mechanism of pausing and arrest during continuous elongation by Escherichia coli RNA polymerase. Proc. Natl Acad. Sci. USA 99, 11682-11687 (2002).
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 11682-11687
    • Forde, N.R.1    Izhaky, D.2    Woodcock, G.R.3    Wuite, G.J.4    Bustamante, C.5
  • 28
    • 0030969278 scopus 로고    scopus 로고
    • RNA polymerase slides home: Pause and termination site recognition
    • Landick, R. RNA polymerase slides home: pause and termination site recognition. Cell 88, 741-744 (1997).
    • (1997) Cell , vol.88 , pp. 741-744
    • Landick, R.1
  • 29
    • 0034602688 scopus 로고    scopus 로고
    • Pulling a single chromatin fiber reveals the forces that maintain its higher-order structure
    • Cui, Y. & Bustamante, C. Pulling a single chromatin fiber reveals the forces that maintain its higher-order structure. Proc. Natl Acad. Sci. USA 97, 127-132 (2000).
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 127-132
    • Cui, Y.1    Bustamante, C.2
  • 30
    • 0034958378 scopus 로고    scopus 로고
    • Unfolding individual nucleosomes by stretching single chromatin fibers with optical tweezers
    • Bennink, M. L. et al. Unfolding individual nucleosomes by stretching single chromatin fibers with optical tweezers. Nature Struct. Biol. 8, 606-610 (2001).
    • (2001) Nature Struct. Biol. , vol.8 , pp. 606-610
    • Bennink, M.L.1
  • 31
    • 0037133348 scopus 로고    scopus 로고
    • Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA
    • Brower-Toland, B. D. et al. Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA. Proc. Natl Acad. Sci. USA 99, 1960-1965 (2002).
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 1960-1965
    • Brower-Toland, B.D.1
  • 32
    • 0035909370 scopus 로고    scopus 로고
    • The bacteriophage φ29 portal motor can package DNA against a large internal force
    • Smith, D. E. et al. The bacteriophage φ29 portal motor can package DNA against a large internal force. Nature 413, 748-752 (2001).
    • (2001) Nature , vol.413 , pp. 748-752
    • Smith, D.E.1
  • 34
    • 0030064676 scopus 로고    scopus 로고
    • DNA: An extensible molecule
    • Cluzel, P. et al. DNA: an extensible molecule. Science 271, 792-794 (1996).
    • (1996) Science , vol.271 , pp. 792-794
    • Cluzel, P.1
  • 35
    • 18344386476 scopus 로고    scopus 로고
    • Structural transitions of a twisted and stretched DNA molecule
    • Leger, J. F. et al. Structural transitions of a twisted and stretched DNA molecule. Phys. Rev. Lett. 83, 1066-1069 (1999).
    • (1999) Phys. Rev. Lett. , vol.83 , pp. 1066-1069
    • Leger, J.F.1
  • 36
    • 0036009140 scopus 로고    scopus 로고
    • Thermodynamics of DNA interactions from single molecule stretching experiments
    • Williams, M. C., Rouzina, I. & Bloomfield, V. A. Thermodynamics of DNA interactions from single molecule stretching experiments. Acc. Chem. Res. 35, 159-166 (2002).
    • (2002) Acc. Chem. Res. , vol.35 , pp. 159-166
    • Williams, M.C.1    Rouzina, I.2    Bloomfield, V.A.3
  • 37
    • 34548455815 scopus 로고
    • Nucleic acid: An extensible molecule?
    • Wilkins, M. H. F., Gosling, R. G. & Seeds, W. E. Nucleic acid: an extensible molecule? Nature 167, 759-760 (1951).
    • (1951) Nature , vol.167 , pp. 759-760
    • Wilkins, M.H.F.1    Gosling, R.G.2    Seeds, W.E.3
  • 39
    • 0032564447 scopus 로고    scopus 로고
    • Stretched and overwound DNA forms a Pauling-like structure with exposed bases
    • Allemand, J. F., Bensimon, D., Lavery, R. & Croquette, V. Stretched and overwound DNA forms a Pauling-like structure with exposed bases. Proc. Natl Acad. Sci. USA 95, 14152-14157 (1998).
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 14152-14157
    • Allemand, J.F.1    Bensimon, D.2    Lavery, R.3    Croquette, V.4
  • 40
    • 0002572036 scopus 로고
    • A proposed structure for the nucleic acids
    • Pauling, L. & Corey, R. B. A proposed structure for the nucleic acids. Proc. Natl Acad. Sci. USA 39, 84-97 (1953).
    • (1953) Proc. Natl. Acad. Sci. USA , vol.39 , pp. 84-97
    • Pauling, L.1    Corey, R.B.2
  • 41
    • 0035333546 scopus 로고    scopus 로고
    • Structural transitions in DNA driven by external force and torque
    • Sarkar, A., Leger, J. F., Chatenay, D. & Marko, J. F. Structural transitions in DNA driven by external force and torque. Phys. Rev. E 63, 051903-1-051903-10 (2001).
    • (2001) Phys. Rev. E , vol.63 , pp. 0519031-05190310
    • Sarkar, A.1    Leger, J.F.2    Chatenay, D.3    Marko, J.F.4
  • 42
    • 0035804245 scopus 로고    scopus 로고
    • Direct observation of DNA rotation during transcription by Escherichia coli RNA polymerase
    • Harada, Y. et al. Direct observation of DNA rotation during transcription by Escherichia coli RNA polymerase. Nature 409, 113-115 (2001).
    • (2001) Nature , vol.409 , pp. 113-115
    • Harada, Y.1
  • 43
    • 0035957720 scopus 로고    scopus 로고
    • Reversible unfolding of single RNA molecules by mechanical force
    • Liphardt, J., Onoa, B., Smith, S. B., Tinoco, I. J. & Bustamante, C. Reversible unfolding of single RNA molecules by mechanical force. Science 292, 733-737 (2001).
    • (2001) Science , vol.292 , pp. 733-737
    • Liphardt, J.1    Onoa, B.2    Smith, S.B.3    Tinoco, I.J.4    Bustamante, C.5
  • 44
    • 0000920836 scopus 로고    scopus 로고
    • DNA handles for single molecule experiments
    • Hegner, M. DNA Handles for single molecule experiments. Single Mol. 1, 139-144 (2000).
    • (2000) Single Mol. , vol.1 , pp. 139-144
    • Hegner, M.1
  • 45
    • 0034533671 scopus 로고    scopus 로고
    • Mechanical design of proteins studied by single-molecule force spectroscopy and protein engineering
    • Carrion-Vazquez, M. et al. Mechanical design of proteins studied by single-molecule force spectroscopy and protein engineering. Prog. Biophys. Mol. Biol. 74, 63-91 (2000).
    • (2000) Prog. Biophys. Mol. Biol. , vol.74 , pp. 63-91
    • Carrion-Vazquez, M.1
  • 47
    • 0037011984 scopus 로고    scopus 로고
    • A robust DNA mechanical device controlled by hybridization topology
    • Yan, E., Zhang, X., Shen, Z. & Seeman, N. C. A robust DNA mechanical device controlled by hybridization topology. Nature 415, 62-65 (2002).
    • (2002) Nature , vol.415 , pp. 62-65
    • Yan, E.1    Zhang, X.2    Shen, Z.3    Seeman, N.C.4
  • 48
    • 0033552937 scopus 로고    scopus 로고
    • A nanomechanical device based on the B-Z transition of DNA
    • Mao, C., Sun, W., & Seeman, N. C. A nanomechanical device based on the B-Z transition of DNA. Nature 397, 144-146 (1999).
    • (1999) Nature , vol.397 , pp. 144-146
    • Mao, C.1    Sun, W.2    Seeman, N.C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.