Contribution of the intrinsic curvature to measured DNA persistence length

Journal of Molecular Biology

Volumn 317, Issue 2, 2002, Pages 205-213

  Vologodskaia, Maria ^a   Vologodskii, Alexander ^a  

^a NEW YORK UNIVERSITY   (United States)

Author keywords

DNA bending; DNA cyclization; DNA flexibility; DNA intrinsic curvature; DNA persistence length

Indexed keywords

CURVED DNA; DNA BASE; DNA FRAGMENT;

ACCURACY; ANALYTIC METHOD; ARTICLE; BASE PAIRING; CYCLIZATION; DNA CONFORMATION; DNA SEQUENCE; NUCLEOTIDE REPEAT; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; THERMAL ANALYSIS;

EID: 0036293430     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2001.5366     Document Type: Article

References (43)

1. Flexibility of DNA
2. Static persistence length of DNA
3. Static contributions to the persistence length of DNA and dynamic contributions to DNA curvature
4. The effect of intrinsic curvature on conformational properties of circular DNA
5. Stretching a heteropolymer
6. Sequence-disorder effects on DNA entropic elasticity
7. Transport of torsional stress in DNA
8. The isolation of restriction fragments containing the primary and secondary (galT) bacterial att sites of phage lambda
9. Isolation of maxicircle component of kinetoplast DNA from hemoflagellate protozoa
10. Bent helical structure in kinetoplast DNA
11. Curved DNA
12. DNA curvature
13. Intrinsically bent DNA
14. Sequence-directed curvature of DNA
15. Solution structure of an A-tract DNA bend
16. Curved DNA without A-A: Experimental estimation of all 16 DNA wedge angles
17. DNA sequence-dependent deformability deduced from protein-DNA crystal complexes
18. DNA structure from A to B
19. Dehydrating agents sharply reduce curvature in DNAs containing A tracts
20. Determination DNA global structure and DNA bending by application of NMR residual dipolar coupling
21. 13C order parameters implies conformational coupling in dinucleotide units
22. Nucleic acids: Theory and computer simulation, Y2 K
23. Modeling DNA deformations
24. Energetics of DNA twisting. I. Relation between twist and cyclization probability
25. Application of the method of phage T4 DNA ligase-catalyzed ring-closure to the study of DNA structure. II. NaCl-dependence of DNA flexibility and helical repeat
26. Determination of DNA persistence length by cryo-electron microscopy. Separation of the static and dynamic contributions to the apparent persistence length of DNA
27. Intramolecular reaction in polycondensation. I. Theory of linear systems
28. Cyclization of phage DNAs
29. DNA flexibility studied by covalent closure of short fragments into circles
30. Determination of the extent of DNA bending by an adenine-thymine tract
31. Multimerization-cyclization of DNA fragments as a method of conformational analysis
32. Application of the method of phage T4 DNA ligase-catalyzed ring-closure to the study of DNA structure. I. Computational analysis
33. Ring-closure probabilities for twisted wormlike chains. Application to DNA
34. Helical repeat of DNA in solution
35. Variance of writhe for wormlike DNA rings with excluded volume
36. Entropic elasticity of lambda-phage DNA
37. Bending and twisting dynamics of short DNAs. Analysis of the triplet anisotropy decay of a 209 base-pair fragment by Brownian simulation
38. Dynamic bending rigidity of DNA
39. Dynamic light scattering from weakly bending rods - Estimation of the dynamic bending rigidity of the M13 virus
40. Structure and dynamics of curved DNA fragments in solution: Evidence for slow modes of configurational transitions
41. Curvature: Software for the analysis of curved DNA
42. Torsional rigidity of DNA and length dependence of the free energy of DNA supercoiling