-
1
-
-
0003809032
-
On the Origin of Species
-
Routledge
-
Darwin, C., On the Origin of Species. 1859, Routledge.
-
(1859)
-
-
Darwin, C.1
-
2
-
-
84893015775
-
Genomics and the origin of species
-
Seehausen, O., Butlin, R.K., Keller, I., Wagner, C.E., Boughman, J.W., Hohenlohe, P.A., Peichel, C.L., Saetre, G.-P., Bank, C., Brännström, Ã., et al. Genomics and the origin of species. Nat. Rev. Genet., 15, 2014, 176.
-
(2014)
Nat. Rev. Genet.
, vol.15
, pp. 176
-
-
Seehausen, O.1
Butlin, R.K.2
Keller, I.3
Wagner, C.E.4
Boughman, J.W.5
Hohenlohe, P.A.6
Peichel, C.L.7
Saetre, G.-P.8
Bank, C.9
Brännström, Ã.10
-
3
-
-
80053183745
-
Deciphering the genetic basis of animal domestication
-
Wiener, P., Wilkinson, S., Deciphering the genetic basis of animal domestication. Proc. Biol. Sci. Lond. [Biol]. 278 (2011), 3161–3170.
-
(2011)
Proc. Biol. Sci. Lond. [Biol].
, vol.278
, pp. 3161-3170
-
-
Wiener, P.1
Wilkinson, S.2
-
4
-
-
48349120780
-
Deletion in a gene associated with grain size increased yields during rice domestication
-
Shomura, A., Izawa, T., Ebana, K., Ebitani, T., Kanegae, H., Konishi, S., Yano, M., Deletion in a gene associated with grain size increased yields during rice domestication. Nat. Genet., 40, 2008, 1023.
-
(2008)
Nat. Genet.
, vol.40
, pp. 1023
-
-
Shomura, A.1
Izawa, T.2
Ebana, K.3
Ebitani, T.4
Kanegae, H.5
Konishi, S.6
Yano, M.7
-
5
-
-
84947611011
-
Breeding and domesticating crops adapted to drought and salinity: a new paradigm for increasing food production
-
Fita, A., Rodriguez-Burruezo, A.n., Boscaiu, M., Prohens, J., Vicente, O., Breeding and domesticating crops adapted to drought and salinity: a new paradigm for increasing food production. Front. Plant Sci., 6, 2015, 978.
-
(2015)
Front. Plant Sci.
, vol.6
, pp. 978
-
-
Fita, A.1
Rodriguez-Burruezo, A.N.2
Boscaiu, M.3
Prohens, J.4
Vicente, O.5
-
6
-
-
67650341019
-
From wild animals to domestic pets, an evolutionary view of domestication
-
Driscoll, C.A., Macdonald, D.W., O'Brien, S.J., From wild animals to domestic pets, an evolutionary view of domestication. Proc. Natl. Acad. Sci. USA 106 (2009), 9971–9978.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 9971-9978
-
-
Driscoll, C.A.1
Macdonald, D.W.2
O'Brien, S.J.3
-
7
-
-
85046106608
-
The Rosa genome provides new insights into the domestication of modern roses
-
Raymond, O., Gouzy, J., Just, J., Badouin, H., Verdenaud, M., Lemainque, A., Vergne, P., Moja, S., Choisne, N., Pont, C., et al. The Rosa genome provides new insights into the domestication of modern roses. Nat. Genet. 50 (2018), 772–777.
-
(2018)
Nat. Genet.
, vol.50
, pp. 772-777
-
-
Raymond, O.1
Gouzy, J.2
Just, J.3
Badouin, H.4
Verdenaud, M.5
Lemainque, A.6
Vergne, P.7
Moja, S.8
Choisne, N.9
Pont, C.10
-
8
-
-
85024842165
-
Ancient European dog genomes reveal continuity since the Early Neolithic
-
Botigué, L.R., Song, S., Scheu, A., Gopalan, S., Pendleton, A.L., Oetjens, M., Taravella, A.M., Seregély, T., Zeeb-Lanz, A., Arbogast, R.-M., et al. Ancient European dog genomes reveal continuity since the Early Neolithic. Nat. Commun., 8, 2017, 16082.
-
(2017)
Nat. Commun.
, vol.8
, pp. 16082
-
-
Botigué, L.R.1
Song, S.2
Scheu, A.3
Gopalan, S.4
Pendleton, A.L.5
Oetjens, M.6
Taravella, A.M.7
Seregély, T.8
Zeeb-Lanz, A.9
Arbogast, R.-M.10
-
9
-
-
84984999386
-
Genomic insights into the origin of farming in the ancient Near East
-
Lazaridis, I., Nadel, D., Rollefson, G., Merrett, D.C., Rohland, N., Mallick, S., Fernandes, D., Novak, M., Gamarra, B., Sirak, K., et al. Genomic insights into the origin of farming in the ancient Near East. Nature, 536, 2016, 419.
-
(2016)
Nature
, vol.536
, pp. 419
-
-
Lazaridis, I.1
Nadel, D.2
Rollefson, G.3
Merrett, D.C.4
Rohland, N.5
Mallick, S.6
Fernandes, D.7
Novak, M.8
Gamarra, B.9
Sirak, K.10
-
10
-
-
85024404293
-
Wild emmer genome architecture and diversity elucidate wheat evolution and domestication
-
Avni, R., Nave, M., Barad, O., Baruch, K., Twardziok, S.O., Gundlach, H., Hale, I., Mascher, M., Spannagl, M., Wiebe, K., et al. Wild emmer genome architecture and diversity elucidate wheat evolution and domestication. Science 357 (2017), 93–97.
-
(2017)
Science
, vol.357
, pp. 93-97
-
-
Avni, R.1
Nave, M.2
Barad, O.3
Baruch, K.4
Twardziok, S.O.5
Gundlach, H.6
Hale, I.7
Mascher, M.8
Spannagl, M.9
Wiebe, K.10
-
11
-
-
85026552709
-
Conformational risk factors of brachycephalic obstructive airway syndrome (BOAS) in pugs, French bulldogs, and bulldogs
-
Liu, N.-C., Troconis, E.L., Kalmar, L., Price, D.J., Wright, H.E., Adams, V.J., Sargan, D.R., Ladlow, J.F., Conformational risk factors of brachycephalic obstructive airway syndrome (BOAS) in pugs, French bulldogs, and bulldogs. PLoS One, 12, 2017, e0181928.
-
(2017)
PLoS One
, vol.12
, pp. e0181928
-
-
Liu, N.-C.1
Troconis, E.L.2
Kalmar, L.3
Price, D.J.4
Wright, H.E.5
Adams, V.J.6
Sargan, D.R.7
Ladlow, J.F.8
-
12
-
-
16944364045
-
A deletion in the bovine myostatin gene causes the double-muscled phenotype in cattle
-
Grobet, L., Martin, L.J.R., Poncelet, D., Pirottin, D., Brouwers, B., Riquet, J., Schoeberlein, A., Dunner, S., Ménissier, F., Massabanda, J., et al. A deletion in the bovine myostatin gene causes the double-muscled phenotype in cattle. Nat. Genet., 17, 1997, 71.
-
(1997)
Nat. Genet.
, vol.17
, pp. 71
-
-
Grobet, L.1
Martin, L.J.R.2
Poncelet, D.3
Pirottin, D.4
Brouwers, B.5
Riquet, J.6
Schoeberlein, A.7
Dunner, S.8
Ménissier, F.9
Massabanda, J.10
-
13
-
-
0003696589
-
Variation of Plants and Animals under Domestication
-
John Murray
-
Darwin, C.R., Variation of Plants and Animals under Domestication. 1868, John Murray.
-
(1868)
-
-
Darwin, C.R.1
-
14
-
-
0005835040
-
Domestication of animals
-
Belyaev, D.K., Domestication of animals. Science 5 (1969), 47–52.
-
(1969)
Science
, vol.5
, pp. 47-52
-
-
Belyaev, D.K.1
-
15
-
-
85051462033
-
Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours
-
Kukekova, A.V., Johnson, J.L., Xiang, X., Feng, S., Liu, S., Rando, H.M., Kharlamova, A.V., Herbeck, Y., Serdyukova, N.A., Xiong, Z., et al. Red fox genome assembly identifies genomic regions associated with tame and aggressive behaviours. Nat. Ecol. Evol., 2, 2018, 1479.
-
(2018)
Nat. Ecol. Evol.
, vol.2
, pp. 1479
-
-
Kukekova, A.V.1
Johnson, J.L.2
Xiang, X.3
Feng, S.4
Liu, S.5
Rando, H.M.6
Kharlamova, A.V.7
Herbeck, Y.8
Serdyukova, N.A.9
Xiong, Z.10
-
16
-
-
84907552228
-
Taming wild yeast: potential of conventional and nonconventional yeasts in industrial fermentations
-
Steensels, J., Verstrepen, K.J., Taming wild yeast: potential of conventional and nonconventional yeasts in industrial fermentations. Annu. Rev. Microbiol. 68 (2014), 61–80.
-
(2014)
Annu. Rev. Microbiol.
, vol.68
, pp. 61-80
-
-
Steensels, J.1
Verstrepen, K.J.2
-
17
-
-
33749402239
-
A History of Beer and Brewing, Volume 34
-
Royal Society of Chemistry
-
Hornsey, I.S., A History of Beer and Brewing, Volume 34. 2003, Royal Society of Chemistry.
-
(2003)
-
-
Hornsey, I.S.1
-
18
-
-
84908302290
-
Large-scale selection and breeding to generate industrial yeasts with superior aroma production
-
Steensels, J., Meersman, E., Snoek, T., Saels, V., Verstrepen, K.J., Large-scale selection and breeding to generate industrial yeasts with superior aroma production. Appl. Environ. Microbiol. 80 (2014), 6962–6975.
-
(2014)
Appl. Environ. Microbiol.
, vol.80
, pp. 6962-6975
-
-
Steensels, J.1
Meersman, E.2
Snoek, T.3
Saels, V.4
Verstrepen, K.J.5
-
19
-
-
85047290582
-
Application of a breeding strategy to generate robust yeast starter cultures for cocoa pulp fermentations
-
00133–00115
-
Meersman, E., Steensels, J., Paulus, T., Struyf, N., Saels, V., Mathawan, M., Allegaert, L., Vrancken, G., Verstrepen, K.J., Application of a breeding strategy to generate robust yeast starter cultures for cocoa pulp fermentations. Appl. Environ. Microbiol., 2015 00133–00115.
-
(2015)
Appl. Environ. Microbiol.
-
-
Meersman, E.1
Steensels, J.2
Paulus, T.3
Struyf, N.4
Saels, V.5
Mathawan, M.6
Allegaert, L.7
Vrancken, G.8
Verstrepen, K.J.9
-
20
-
-
84986322634
-
Domestication and divergence of Saccharomyces cerevisiae beer yeasts
-
e1316
-
Gallone, B., Steensels, J., Prahl, T., Soriaga, L., Saels, V., Herrera-Malaver, B., Merlevede, A., Roncoroni, M., Voordeckers, K., Miraglia, L., et al. Domestication and divergence of Saccharomyces cerevisiae beer yeasts. Cell 166 (2016), 1397–1410 e1316.
-
(2016)
Cell
, vol.166
, pp. 1397-1410
-
-
Gallone, B.1
Steensels, J.2
Prahl, T.3
Soriaga, L.4
Saels, V.5
Herrera-Malaver, B.6
Merlevede, A.7
Roncoroni, M.8
Voordeckers, K.9
Miraglia, L.10
-
21
-
-
84864599461
-
The evolutionary imprint of domestication on genome variation and function of the filamentous fungus Aspergillus oryzae
-
Gibbons, J.G., Salichos, L., Slot, J.C., Rinker, D.C., McGary, K.L., King, J.G., Klich, M.A., Tabb, D.L., McDonald, W.H., Rokas, A., The evolutionary imprint of domestication on genome variation and function of the filamentous fungus Aspergillus oryzae. Curr. Biol. 22 (2012), 1403–1409.
-
(2012)
Curr. Biol.
, vol.22
, pp. 1403-1409
-
-
Gibbons, J.G.1
Salichos, L.2
Slot, J.C.3
Rinker, D.C.4
McGary, K.L.5
King, J.G.6
Klich, M.A.7
Tabb, D.L.8
McDonald, W.H.9
Rokas, A.10
-
22
-
-
33750341148
-
Comparative genomics of the lactic acid bacteria
-
Makarova, K., Slesarev, A., Wolf, Y., Sorokin, A., Mirkin, B., Koonin, E., Pavlov, A., Pavlova, N., Karamychev, V., Polouchine, N., et al. Comparative genomics of the lactic acid bacteria. Proc. Natl. Acad. Sci. USA 103 (2006), 15611–15616.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 15611-15616
-
-
Makarova, K.1
Slesarev, A.2
Wolf, Y.3
Sorokin, A.4
Mirkin, B.5
Koonin, E.6
Pavlov, A.7
Pavlova, N.8
Karamychev, V.9
Polouchine, N.10
-
23
-
-
85062628759
-
A polyploid admixed origin of beer yeasts derived from European and Asian wine populations
-
Fay, J.C., Liu, P., Ong, G.T., Dunham, M.J., Cromie, G.A., Jeffery, E.W., Ludlow, C.L., Dudley, A.M., A polyploid admixed origin of beer yeasts derived from European and Asian wine populations. PLoS Biol., 17, 2019, e3000147.
-
(2019)
PLoS Biol.
, vol.17
, pp. e3000147
-
-
Fay, J.C.1
Liu, P.2
Ong, G.T.3
Dunham, M.J.4
Cromie, G.A.5
Jeffery, E.W.6
Ludlow, C.L.7
Dudley, A.M.8
-
24
-
-
85061111963
-
Copy number variation in domestication
-
Lye, Z.N., Purugganan, M.D., Copy number variation in domestication. Trends Plant Sci. 24 (2019), 352–365.
-
(2019)
Trends Plant Sci.
, vol.24
, pp. 352-365
-
-
Lye, Z.N.1
Purugganan, M.D.2
-
25
-
-
60149084807
-
The nature of selection during plant domestication
-
Purugganan, M.D., Fuller, D.Q., The nature of selection during plant domestication. Nature, 457, 2009, 843.
-
(2009)
Nature
, vol.457
, pp. 843
-
-
Purugganan, M.D.1
Fuller, D.Q.2
-
26
-
-
85014266762
-
Blue cheese-making has shaped the population genetic structure of the mould Penicillium roqueforti
-
Ropars, J., Lopez-Villavicencio, M., Snirc, A., Lacoste, S., Giraud, T., Blue cheese-making has shaped the population genetic structure of the mould Penicillium roqueforti. PLoS One, 12, 2017, e0171387.
-
(2017)
PLoS One
, vol.12
, pp. e0171387
-
-
Ropars, J.1
Lopez-Villavicencio, M.2
Snirc, A.3
Lacoste, S.4
Giraud, T.5
-
27
-
-
85065660467
-
Independent domestication events in the blue-cheese fungus Penicillium roqueforti
-
451773
-
Dumas, E., Feurtey, A., de la Vega, R.C.R., Le Prieur, S., Snirc, A., Coton, M., Thierry, A., Coton, E., Le Piver, M., Roueyre, D., et al. Independent domestication events in the blue-cheese fungus Penicillium roqueforti. bioRxiv, 2018 451773.
-
(2018)
bioRxiv
-
-
Dumas, E.1
Feurtey, A.2
de la Vega, R.C.R.3
Le Prieur, S.4
Snirc, A.5
Coton, M.6
Thierry, A.7
Coton, E.8
Le Piver, M.9
Roueyre, D.10
-
28
-
-
84892149592
-
Multiple recent horizontal transfers of a large genomic region in cheese making fungi
-
Cheeseman, K., Ropars, J., Renault, P., Dupont, J., Gouzy, J., Branca, A., Abraham, A.-L., Ceppi, M., Conseiller, E., Debuchy, R., et al. Multiple recent horizontal transfers of a large genomic region in cheese making fungi. Nat. Commun., 5, 2014, 2876.
-
(2014)
Nat. Commun.
, vol.5
, pp. 2876
-
-
Cheeseman, K.1
Ropars, J.2
Renault, P.3
Dupont, J.4
Gouzy, J.5
Branca, A.6
Abraham, A.-L.7
Ceppi, M.8
Conseiller, E.9
Debuchy, R.10
-
29
-
-
1042290278
-
Lactic acid bacteria as functional starter cultures for the food fermentation industry
-
Leroy, F.d.r., De Vuyst, L., Lactic acid bacteria as functional starter cultures for the food fermentation industry. Trends Food Sci. Technol. 15 (2004), 67–78.
-
(2004)
Trends Food Sci. Technol.
, vol.15
, pp. 67-78
-
-
Leroy, F.D.R.1
De Vuyst, L.2
-
30
-
-
33846075967
-
Evolutionary genomics of lactic acid bacteria
-
Makarova, K.S., Koonin, E.V., Evolutionary genomics of lactic acid bacteria. J. Bacteriol. 189 (2007), 1199–1208.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 1199-1208
-
-
Makarova, K.S.1
Koonin, E.V.2
-
31
-
-
29144536283
-
Complete sequences of four plasmids of Lactococcus lactis subsp. cremoris SK11 reveal extensive adaptation to the dairy environment
-
Siezen, R.J., Renckens, B., van Swam, I., Peters, S., van Kranenburg, R., Kleerebezem, M., de Vos, W.M., Complete sequences of four plasmids of Lactococcus lactis subsp. cremoris SK11 reveal extensive adaptation to the dairy environment. Appl. Environ. Microbiol. 71 (2005), 8371–8382.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 8371-8382
-
-
Siezen, R.J.1
Renckens, B.2
van Swam, I.3
Peters, S.4
van Kranenburg, R.5
Kleerebezem, M.6
de Vos, W.M.7
-
32
-
-
85026851405
-
Extensive horizontal gene transfer in cheese-associated bacteria
-
Bonham, K.S., Wolfe, B.E., Dutton, R.J., Extensive horizontal gene transfer in cheese-associated bacteria. Elife, 6, 2017, e22144.
-
(2017)
Elife
, vol.6
, pp. e22144
-
-
Bonham, K.S.1
Wolfe, B.E.2
Dutton, R.J.3
-
33
-
-
77958505533
-
Chromosomal diversity in Lactococcus lactis and the origin of dairy starter cultures
-
Kelly, W.J., Ward, L.J., Leahy, S.C., Chromosomal diversity in Lactococcus lactis and the origin of dairy starter cultures. Genome Biol. Evol. 2 (2010), 729–744.
-
(2010)
Genome Biol. Evol.
, vol.2
, pp. 729-744
-
-
Kelly, W.J.1
Ward, L.J.2
Leahy, S.C.3
-
34
-
-
33745128028
-
The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution
-
Van de Guchte, M., Penaud, S., Grimaldi, C., Barbe, V., Bryson, K., Nicolas, P., Robert, C., Oztas, S., Mangenot, S., Couloux, A., The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution. Proc. Natl. Acad. Sci. USA 103 (2006), 9274–9279.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 9274-9279
-
-
Van de Guchte, M.1
Penaud, S.2
Grimaldi, C.3
Barbe, V.4
Bryson, K.5
Nicolas, P.6
Robert, C.7
Oztas, S.8
Mangenot, S.9
Couloux, A.10
-
35
-
-
0029941580
-
A new cell surface proteinase: sequencing and analysis of the prtB gene from Lactobacillus delbruekii subsp. bulgaricus
-
Gilbert, C., Atlan, D., Blanc, B., Portailer, R., Germond, J.E., Lapierre, L., Mollet, B., A new cell surface proteinase: sequencing and analysis of the prtB gene from Lactobacillus delbruekii subsp. bulgaricus. J. Bacteriol. 178 (1996), 3059–3065.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 3059-3065
-
-
Gilbert, C.1
Atlan, D.2
Blanc, B.3
Portailer, R.4
Germond, J.E.5
Lapierre, L.6
Mollet, B.7
-
36
-
-
84855320124
-
Microbial domestication signatures of Lactococcus lactis can be reproduced by experimental evolution
-
Bachmann, H., Starrenburg, M.J., Molenaar, D., Kleerebezem, M., van Hylckama Vlieg, J.E., Microbial domestication signatures of Lactococcus lactis can be reproduced by experimental evolution. Genome Res. 22 (2012), 115–124.
-
(2012)
Genome Res.
, vol.22
, pp. 115-124
-
-
Bachmann, H.1
Starrenburg, M.J.2
Molenaar, D.3
Kleerebezem, M.4
van Hylckama Vlieg, J.E.5
-
37
-
-
84971264198
-
Phylogenomic analysis of Oenococcus oeni reveals specific domestication of strains to cider and wines
-
Campbell-Sills, H., El Khoury, M., Favier, M., Romano, A., Biasioli, F., Spano, G., Sherman, D.J., Bouchez, O., Coton, E., Coton, M., et al. Phylogenomic analysis of Oenococcus oeni reveals specific domestication of strains to cider and wines. Genome Biol. Evol. 7 (2015), 1506–1518.
-
(2015)
Genome Biol. Evol.
, vol.7
, pp. 1506-1518
-
-
Campbell-Sills, H.1
El Khoury, M.2
Favier, M.3
Romano, A.4
Biasioli, F.5
Spano, G.6
Sherman, D.J.7
Bouchez, O.8
Coton, E.9
Coton, M.10
-
38
-
-
38749153289
-
Role of hypermutability in the evolution of the genus Oenococcus
-
Marcobal, A.M., Sela, D.A., Wolf, Y.I., Makarova, K.S., Mills, D.A., Role of hypermutability in the evolution of the genus Oenococcus. J. Bacteriol. 190 (2008), 564–570.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 564-570
-
-
Marcobal, A.M.1
Sela, D.A.2
Wolf, Y.I.3
Makarova, K.S.4
Mills, D.A.5
-
39
-
-
0034389562
-
Utilization of microbes to process and preserve meat
-
Lücke, F.-K., Utilization of microbes to process and preserve meat. Meat Sci. 56 (2000), 105–115.
-
(2000)
Meat Sci.
, vol.56
, pp. 105-115
-
-
Lücke, F.-K.1
-
40
-
-
28644443758
-
The complete genome sequence of the meat-borne lactic acid bacterium Lactobacillus sakei 23K
-
Chaillou, S., Champomier-Vergès, M.-C., Cornet, M., Crutz-Le Coq, A.-M., Dudez, A.-M., Martin, V., Beaufils, S., Darbon-Rongère, E., Bossy, R., Loux, V., et al. The complete genome sequence of the meat-borne lactic acid bacterium Lactobacillus sakei 23K. Nat. Biotechnol., 23, 2005, 1527.
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 1527
-
-
Chaillou, S.1
Champomier-Vergès, M.-C.2
Cornet, M.3
Crutz-Le Coq, A.-M.4
Dudez, A.-M.5
Martin, V.6
Beaufils, S.7
Darbon-Rongère, E.8
Bossy, R.9
Loux, V.10
-
41
-
-
84884381841
-
Population genetics of Lactobacillus sakei reveals three lineages with distinct evolutionary histories
-
Chaillou, S., Lucquin, I., Najjari, A., Zagorec, M., Champomier-Vergès, M.-C., Population genetics of Lactobacillus sakei reveals three lineages with distinct evolutionary histories. PLoS One, 8, 2013, e73253.
-
(2013)
PLoS One
, vol.8
, pp. e73253
-
-
Chaillou, S.1
Lucquin, I.2
Najjari, A.3
Zagorec, M.4
Champomier-Vergès, M.-C.5
-
42
-
-
84894102394
-
Recent research and development of Monascus fermentation products
-
Srianta, I., Ristiarini, S., Nugerahani, I., Sen, S.K., Zhang, B.B., Xu, G.R., Blanc, P.J., Recent research and development of Monascus fermentation products. Int. Food Res. J. 21 (2014), 1–12.
-
(2014)
Int. Food Res. J.
, vol.21
, pp. 1-12
-
-
Srianta, I.1
Ristiarini, S.2
Nugerahani, I.3
Sen, S.K.4
Zhang, B.B.5
Xu, G.R.6
Blanc, P.J.7
-
43
-
-
84938979412
-
Overview of citric acid production from Aspergillus niger
-
Show, P.L., Oladele, K.O., Siew, Q.Y., Aziz Zakry, F.A., Lan, J.C.-W., Ling, T.C., Overview of citric acid production from Aspergillus niger. Front. Life Sci. 8 (2015), 271–283.
-
(2015)
Front. Life Sci.
, vol.8
, pp. 271-283
-
-
Show, P.L.1
Oladele, K.O.2
Siew, Q.Y.3
Aziz Zakry, F.A.4
Lan, J.C.-W.5
Ling, T.C.6
-
44
-
-
29244442741
-
Genome sequencing and analysis of Aspergillus oryzae
-
Machida, M., Asai, K., Sano, M., Tanaka, T., Kumagai, T., Terai, G., Kusumoto, K.-I., Arima, T., Akita, O., Kashiwagi, Y., et al. Genome sequencing and analysis of Aspergillus oryzae. Nature, 438, 2005, 1157.
-
(2005)
Nature
, vol.438
, pp. 1157
-
-
Machida, M.1
Asai, K.2
Sano, M.3
Tanaka, T.4
Kumagai, T.5
Terai, G.6
Kusumoto, K.-I.7
Arima, T.8
Akita, O.9
Kashiwagi, Y.10
-
45
-
-
85029500541
-
Evolutionary biology through the lens of budding yeast comparative genomics
-
Marsit, S., Leducq, J.-B., Durand, E., Marchant, A., Filteau, M., Landry, C.R., Evolutionary biology through the lens of budding yeast comparative genomics. Nat. Rev. Genet., 18, 2017, 581.
-
(2017)
Nat. Rev. Genet.
, vol.18
, pp. 581
-
-
Marsit, S.1
Leducq, J.-B.2
Durand, E.3
Marchant, A.4
Filteau, M.5
Landry, C.R.6
-
46
-
-
84936861677
-
Evolutionary advantage conferred by an eukaryote-to-eukaryote gene transfer event in wine yeasts
-
Marsit, S., Mena, A., Bigey, F., Sauvage, F.o.-X., Couloux, A., Guy, J., Legras, J.-L., Barrio, E., Dequin, S., Galeote, V., Evolutionary advantage conferred by an eukaryote-to-eukaryote gene transfer event in wine yeasts. Mol. Biol. Evol. 32 (2015), 1695–1707.
-
(2015)
Mol. Biol. Evol.
, vol.32
, pp. 1695-1707
-
-
Marsit, S.1
Mena, A.2
Bigey, F.3
Sauvage, F.O.-X.4
Couloux, A.5
Guy, J.6
Legras, J.-L.7
Barrio, E.8
Dequin, S.9
Galeote, V.10
-
47
-
-
33644745112
-
Ecological and evolutionary genomics of Saccharomyces cerevisiae
-
Landry, C.R., Townsend, J.P., Hartl, D.L., Cavalieri, D., Ecological and evolutionary genomics of Saccharomyces cerevisiae. Mol. Ecol. 15 (2006), 575–591.
-
(2006)
Mol. Ecol.
, vol.15
, pp. 575-591
-
-
Landry, C.R.1
Townsend, J.P.2
Hartl, D.L.3
Cavalieri, D.4
-
48
-
-
84938379544
-
Saccharomyces cerevisiae: a nomadic yeast with no niche?
-
Goddard, M.R., Greig, D., Saccharomyces cerevisiae: a nomadic yeast with no niche?. FEMS Yeast Res. 15 (2015), 1–6.
-
(2015)
FEMS Yeast Res.
, vol.15
, pp. 1-6
-
-
Goddard, M.R.1
Greig, D.2
-
49
-
-
33645862582
-
How did Saccharomyces evolve to become a good brewer?
-
Piskur, J., Rozpedowska, E., Polakova, S., Merico, A., Compagno, C., How did Saccharomyces evolve to become a good brewer?. Trends Genet. 22 (2006), 183–186.
-
(2006)
Trends Genet.
, vol.22
, pp. 183-186
-
-
Piskur, J.1
Rozpedowska, E.2
Polakova, S.3
Merico, A.4
Compagno, C.5
-
50
-
-
85045540242
-
Genome evolution across 1,011 Saccharomyces cerevisiae isolates
-
Peter, J., De Chiara, M., Friedrich, A., Yue, J.-X., Pflieger, D., Bergstrom, A., Sigwalt, A., Barre, B., Freel, K., Llored, A., et al. Genome evolution across 1,011 Saccharomyces cerevisiae isolates. Nature, 556, 2018, 339.
-
(2018)
Nature
, vol.556
, pp. 339
-
-
Peter, J.1
De Chiara, M.2
Friedrich, A.3
Yue, J.-X.4
Pflieger, D.5
Bergstrom, A.6
Sigwalt, A.7
Barre, B.8
Freel, K.9
Llored, A.10
-
51
-
-
33645096818
-
Evidence for domesticated and wild populations of Saccharomyces cerevisiae
-
Fay, J.C., Benavides, J.A., Evidence for domesticated and wild populations of Saccharomyces cerevisiae. PLoS Genet., 1, 2005, e5.
-
(2005)
PLoS Genet.
, vol.1
, pp. e5
-
-
Fay, J.C.1
Benavides, J.A.2
-
52
-
-
34248192358
-
Bread, beer and wine: Saccharomyces cerevisiae diversity reflects human history
-
Legras, J.-L., Merdinoglu, D., Cornuet, J.-M., Karst, F., Bread, beer and wine: Saccharomyces cerevisiae diversity reflects human history. Mol. Ecol. 16 (2007), 2091–2102.
-
(2007)
Mol. Ecol.
, vol.16
, pp. 2091-2102
-
-
Legras, J.-L.1
Merdinoglu, D.2
Cornuet, J.-M.3
Karst, F.4
-
53
-
-
23244467882
-
Rewiring of the yeast transcriptional network through the evolution of motif usage
-
Ihmels, J., Bergmann, S., Gerami-Nejad, M., Yanai, I., McClellan, M., Berman, J., Barkai, N., Rewiring of the yeast transcriptional network through the evolution of motif usage. Science 309 (2005), 938–940.
-
(2005)
Science
, vol.309
, pp. 938-940
-
-
Ihmels, J.1
Bergmann, S.2
Gerami-Nejad, M.3
Yanai, I.4
McClellan, M.5
Berman, J.6
Barkai, N.7
-
54
-
-
0036796474
-
Molecular characterization of a chromosomal rearrangement involved in the adaptive evolution of yeast strains
-
Perez-Ortin, J.E., Querol, A., Puig, S., Barrio, E., Molecular characterization of a chromosomal rearrangement involved in the adaptive evolution of yeast strains. Genome Res. 12 (2002), 1533–1539.
-
(2002)
Genome Res.
, vol.12
, pp. 1533-1539
-
-
Perez-Ortin, J.E.1
Querol, A.2
Puig, S.3
Barrio, E.4
-
55
-
-
79959847334
-
Trait variation in yeast is defined by population history
-
Warringer, J., Zorgo, E., Cubillos, F.A., Zia, A., Gjuvsland, A., Simpson, J.T., Forsmark, A., Durbin, R., Omholt, S.W., Louis, E.J., et al. Trait variation in yeast is defined by population history. PLoS Genet., 7, 2011, e1002111.
-
(2011)
PLoS Genet.
, vol.7
, pp. e1002111
-
-
Warringer, J.1
Zorgo, E.2
Cubillos, F.A.3
Zia, A.4
Gjuvsland, A.5
Simpson, J.T.6
Forsmark, A.7
Durbin, R.8
Omholt, S.W.9
Louis, E.J.10
-
56
-
-
84992021857
-
Distinct domestication trajectories in top-fermenting beer yeasts and wine yeasts
-
Gonçalves, M., Pontes, A., Almeida, P., Barbosa, R., Serra, M., Libkind, D., Hutzler, M., Goncalves, P., Sampaio, J.P., Distinct domestication trajectories in top-fermenting beer yeasts and wine yeasts. Curr. Biol. 26 (2016), 2750–2761.
-
(2016)
Curr. Biol.
, vol.26
, pp. 2750-2761
-
-
Gonçalves, M.1
Pontes, A.2
Almeida, P.3
Barbosa, R.4
Serra, M.5
Libkind, D.6
Hutzler, M.7
Goncalves, P.8
Sampaio, J.P.9
-
57
-
-
62649089109
-
Population genomics of domestic and wild yeasts
-
Liti, G., Carter, D.M., Moses, A.M., Warringer, J., Parts, L., James, S.A., Davey, R.P., Roberts, I.N., Burt, A., Koufopanou, V., et al. Population genomics of domestic and wild yeasts. Nature, 458, 2009, 337.
-
(2009)
Nature
, vol.458
, pp. 337
-
-
Liti, G.1
Carter, D.M.2
Moses, A.M.3
Warringer, J.4
Parts, L.5
James, S.A.6
Davey, R.P.7
Roberts, I.N.8
Burt, A.9
Koufopanou, V.10
-
58
-
-
84929658508
-
The 100-genomes strains, an S. cerevisiae resource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen
-
Strope, P.K., Skelly, D.A., Kozmin, S.G., Mahadevan, G., Stone, E.A., Magwene, P.M., Dietrich, F.S., McCusker, J.H., The 100-genomes strains, an S. cerevisiae resource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen. Genome Res. 25 (2015), 762–774.
-
(2015)
Genome Res.
, vol.25
, pp. 762-774
-
-
Strope, P.K.1
Skelly, D.A.2
Kozmin, S.G.3
Mahadevan, G.4
Stone, E.A.5
Magwene, P.M.6
Dietrich, F.S.7
McCusker, J.H.8
-
59
-
-
85050020985
-
The origin and adaptive evolution of domesticated populations of yeast from Far East Asia
-
Duan, S.-F., Han, P.-J., Wang, Q.-M., Liu, W.-Q., Shi, J.-Y., Li, K., Zhang, X.-L., Bai, F.-Y., The origin and adaptive evolution of domesticated populations of yeast from Far East Asia. Nat. Commun., 9, 2018, 2690.
-
(2018)
Nat. Commun.
, vol.9
, pp. 2690
-
-
Duan, S.-F.1
Han, P.-J.2
Wang, Q.-M.3
Liu, W.-Q.4
Shi, J.-Y.5
Li, K.6
Zhang, X.-L.7
Bai, F.-Y.8
-
60
-
-
84868206362
-
Surprisingly diverged populations of S accharomyces cerevisiae in natural environments remote from human activity
-
Wang, Q.-M., Liu, W.-Q., Liti, G., Wang, S.-A., Bai, F.-Y., Surprisingly diverged populations of S accharomyces cerevisiae in natural environments remote from human activity. Mol. Ecol. 21 (2012), 5404–5417.
-
(2012)
Mol. Ecol.
, vol.21
, pp. 5404-5417
-
-
Wang, Q.-M.1
Liu, W.-Q.2
Liti, G.3
Wang, S.-A.4
Bai, F.-Y.5
-
61
-
-
84945452256
-
A population genomics insight into the Mediterranean origins of wine yeast domestication
-
Almeida, P., Barbosa, R., Zalar, P., Imanishi, Y., Shimizu, K., Turchetti, B., Legras, J.L., Serra, M., Dequin, S., Couloux, A., et al. A population genomics insight into the Mediterranean origins of wine yeast domestication. Mol. Ecol. 24 (2015), 5412–5427.
-
(2015)
Mol. Ecol.
, vol.24
, pp. 5412-5427
-
-
Almeida, P.1
Barbosa, R.2
Zalar, P.3
Imanishi, Y.4
Shimizu, K.5
Turchetti, B.6
Legras, J.L.7
Serra, M.8
Dequin, S.9
Couloux, A.10
-
62
-
-
0039641038
-
American Breweries II
-
Eastern Coast Breweriana Association
-
Van Wieren, D.P., American Breweries II. 1995, Eastern Coast Breweriana Association.
-
(1995)
-
-
Van Wieren, D.P.1
-
63
-
-
84897883016
-
A high-definition view of functional genetic variation from natural yeast genomes
-
Bergstrom, A., Simpson, J.T., Salinas, F., Barre, B., Parts, L., Zia, A., Nguyen Ba, A.N., Moses, A.M., Louis, E.J., Mustonen, V., et al. A high-definition view of functional genetic variation from natural yeast genomes. Mol. Biol. Evol. 31 (2014), 872–888.
-
(2014)
Mol. Biol. Evol.
, vol.31
, pp. 872-888
-
-
Bergstrom, A.1
Simpson, J.T.2
Salinas, F.3
Barre, B.4
Parts, L.5
Zia, A.6
Nguyen Ba, A.N.7
Moses, A.M.8
Louis, E.J.9
Mustonen, V.10
-
64
-
-
34748895999
-
Diet and the evolution of human amylase gene copy number variation
-
Perry, G.H., Dominy, N.J., Claw, K.G., Lee, A.S., Fiegler, H., Redon, R., Werner, J., Villanea, F.A., Mountain, J.L., Misra, R., et al. Diet and the evolution of human amylase gene copy number variation. Nat. Genet., 39, 2007, 1256.
-
(2007)
Nat. Genet.
, vol.39
, pp. 1256
-
-
Perry, G.H.1
Dominy, N.J.2
Claw, K.G.3
Lee, A.S.4
Fiegler, H.5
Redon, R.6
Werner, J.7
Villanea, F.A.8
Mountain, J.L.9
Misra, R.10
-
65
-
-
84963548310
-
Long-read sequence assembly of the gorilla genome
-
aae0344
-
Gordon, D., Huddleston, J., Chaisson, M.J., Hill, C.M., Kronenberg, Z.N., Munson, K.M., Malig, M., Raja, A., Fiddes, I., Hillier, L.W., et al. Long-read sequence assembly of the gorilla genome. Science, 352, 2016 aae0344.
-
(2016)
Science
, vol.352
-
-
Gordon, D.1
Huddleston, J.2
Chaisson, M.J.3
Hill, C.M.4
Kronenberg, Z.N.5
Munson, K.M.6
Malig, M.7
Raja, A.8
Fiddes, I.9
Hillier, L.W.10
-
66
-
-
85017506126
-
Contrasting evolutionary genome dynamics between domesticated and wild yeasts
-
Yue, J.-X., Li, J., Aigrain, L., Hallin, J., Persson, K., Oliver, K., Bergström, A., Coupland, P., Warringer, J., Lagomarsino, M.C., et al. Contrasting evolutionary genome dynamics between domesticated and wild yeasts. Nat. Genet., 49, 2017, 913.
-
(2017)
Nat. Genet.
, vol.49
, pp. 913
-
-
Yue, J.-X.1
Li, J.2
Aigrain, L.3
Hallin, J.4
Persson, K.5
Oliver, K.6
Bergström, A.7
Coupland, P.8
Warringer, J.9
Lagomarsino, M.C.10
-
67
-
-
77953139551
-
Rapid expansion and functional divergence of subtelomeric gene families in yeasts
-
Brown, C.A., Murray, A.W., Verstrepen, K.J., Rapid expansion and functional divergence of subtelomeric gene families in yeasts. Curr. Biol. 20 (2010), 895–903.
-
(2010)
Curr. Biol.
, vol.20
, pp. 895-903
-
-
Brown, C.A.1
Murray, A.W.2
Verstrepen, K.J.3
-
68
-
-
84900305093
-
QTL dissection of lag phase in wine fermentation reveals a new translocation responsible for Saccharomyces cerevisiae adaptation to sulfite
-
Zimmer, A., Durand, C.c., Loira, N.s., Durrens, P., Sherman, D.J., Marullo, P., QTL dissection of lag phase in wine fermentation reveals a new translocation responsible for Saccharomyces cerevisiae adaptation to sulfite. PLoS One, 9, 2014, e86298.
-
(2014)
PLoS One
, vol.9
, pp. e86298
-
-
Zimmer, A.1
Durand, C.C.2
Loira, N.S.3
Durrens, P.4
Sherman, D.J.5
Marullo, P.6
-
69
-
-
77949831756
-
Structural variation in the human genome and its role in disease
-
Stankiewicz, P., Lupski, J.R., Structural variation in the human genome and its role in disease. Annu. Rev. Med. 61 (2010), 437–455.
-
(2010)
Annu. Rev. Med.
, vol.61
, pp. 437-455
-
-
Stankiewicz, P.1
Lupski, J.R.2
-
70
-
-
84871375832
-
Chromosomal duplication is a transient evolutionary solution to stress
-
Yona, A.H., Manor, Y.S., Herbst, R.H., Romano, G.H., Mitchell, A., Kupiec, M., Pilpel, Y., Dahan, O., Chromosomal duplication is a transient evolutionary solution to stress. Proc. Natl. Acad. Sci. USA 109 (2012), 21010–21015.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 21010-21015
-
-
Yona, A.H.1
Manor, Y.S.2
Herbst, R.H.3
Romano, G.H.4
Mitchell, A.5
Kupiec, M.6
Pilpel, Y.7
Dahan, O.8
-
71
-
-
58149166731
-
The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast
-
Gresham, D., Desai, M.M., Tucker, C.M., Jenq, H.T., Pai, D.A., Ward, A., DeSevo, C.G., Botstein, D., Dunham, M.J., The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast. PLoS Genet., 4, 2008, e1000303.
-
(2008)
PLoS Genet.
, vol.4
, pp. e1000303
-
-
Gresham, D.1
Desai, M.M.2
Tucker, C.M.3
Jenq, H.T.4
Pai, D.A.5
Ward, A.6
DeSevo, C.G.7
Botstein, D.8
Dunham, M.J.9
-
72
-
-
0037058930
-
Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae
-
Dunham, M.J., Badrane, H., Ferea, T., Adams, J., Brown, P.O., Rosenzweig, F., Botstein, D., Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 99 (2002), 16144–16149.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 16144-16149
-
-
Dunham, M.J.1
Badrane, H.2
Ferea, T.3
Adams, J.4
Brown, P.O.5
Rosenzweig, F.6
Botstein, D.7
-
73
-
-
84936817878
-
Too much of a good thing: the unique and repeated paths toward copper adaptation
-
Gerstein, A.C., Ono, J., Lo, D.S., Campbell, M.L., Kuzmin, A., Otto, S.P., Too much of a good thing: the unique and repeated paths toward copper adaptation. Genetics 199 (2015), 555–571.
-
(2015)
Genetics
, vol.199
, pp. 555-571
-
-
Gerstein, A.C.1
Ono, J.2
Lo, D.S.3
Campbell, M.L.4
Kuzmin, A.5
Otto, S.P.6
-
74
-
-
56349088536
-
Aneuploidy underlies rapid adaptive evolution of yeast cells deprived of a conserved cytokinesis motor
-
Rancati, G., Pavelka, N., Fleharty, B., Noll, A., Trimble, R., Walton, K., Perera, A., Staehling-Hampton, K., Seidel, C.W., Li, R., Aneuploidy underlies rapid adaptive evolution of yeast cells deprived of a conserved cytokinesis motor. Cell 135 (2008), 879–893.
-
(2008)
Cell
, vol.135
, pp. 879-893
-
-
Rancati, G.1
Pavelka, N.2
Fleharty, B.3
Noll, A.4
Trimble, R.5
Walton, K.6
Perera, A.7
Staehling-Hampton, K.8
Seidel, C.W.9
Li, R.10
-
75
-
-
85052070755
-
Triticale improvement for forage and cover crop uses in the Southern Great Plains of the United States
-
Ayalew, H., Kumssa, T.T., Butler, T.J., Ma, X.-F., Triticale improvement for forage and cover crop uses in the Southern Great Plains of the United States. Front. Plant Sci., 9, 2018, 1130.
-
(2018)
Front. Plant Sci.
, vol.9
, pp. 1130
-
-
Ayalew, H.1
Kumssa, T.T.2
Butler, T.J.3
Ma, X.-F.4
-
76
-
-
84870698548
-
Evolutionary role of interspecies hybridization and genetic exchanges in yeasts
-
Morales, L., Dujon, B., Evolutionary role of interspecies hybridization and genetic exchanges in yeasts. Microbiol. Mol. Biol. Rev. 76 (2012), 721–739.
-
(2012)
Microbiol. Mol. Biol. Rev.
, vol.76
, pp. 721-739
-
-
Morales, L.1
Dujon, B.2
-
77
-
-
0034691125
-
Hybridization as a stimulus for the evolution of invasiveness in plants?
-
Ellstrand, N.C., Schierenbeck, K.A., Hybridization as a stimulus for the evolution of invasiveness in plants?. Proc. Natl. Acad. Sci. USA 97 (2000), 7043–7050.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 7043-7050
-
-
Ellstrand, N.C.1
Schierenbeck, K.A.2
-
78
-
-
80052293238
-
Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast
-
201105430
-
Libkind, D., Hittinger, C.T., Valerio, E., Gonçalves, C., Dover, J., Johnston, M., Goncalves, P., Sampaio, J.P., Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast. Proc. Natl. Acad. Sci. USA, 2011 201105430.
-
(2011)
Proc. Natl. Acad. Sci. USA
-
-
Libkind, D.1
Hittinger, C.T.2
Valerio, E.3
Gonçalves, C.4
Dover, J.5
Johnston, M.6
Goncalves, P.7
Sampaio, J.P.8
-
79
-
-
84946036222
-
The genome sequence of Saccharomyces eubayanus and the domestication of lager-brewing yeasts
-
Baker, E., Wang, B., Bellora, N., Peris, D., Hulfachor, A.B., Koshalek, J.A., Adams, M., Libkind, D., Hittinger, C.T., The genome sequence of Saccharomyces eubayanus and the domestication of lager-brewing yeasts. Mol. Biol. Evol. 32 (2015), 2818–2831.
-
(2015)
Mol. Biol. Evol.
, vol.32
, pp. 2818-2831
-
-
Baker, E.1
Wang, B.2
Bellora, N.3
Peris, D.4
Hulfachor, A.B.5
Koshalek, J.A.6
Adams, M.7
Libkind, D.8
Hittinger, C.T.9
-
80
-
-
53549098548
-
Reconstruction of the genome origins and evolution of the hybrid lager yeast Saccharomyces pastorianus
-
Dunn, B., Sherlock, G., Reconstruction of the genome origins and evolution of the hybrid lager yeast Saccharomyces pastorianus. Genome Res. 18 (2008), 1610–1623.
-
(2008)
Genome Res.
, vol.18
, pp. 1610-1623
-
-
Dunn, B.1
Sherlock, G.2
-
81
-
-
84863237607
-
Adaptive horizontal transfer of a bacterial gene to an invasive insect pest of coffee
-
Acuña, R., Padilla, B.E., Florez-Ramos, C.P., Rubio, J.D., Herrera, J.C., Benavides, P., Lee, S.-J., Yeats, T.H., Egan, A.N., Doyle, J.J., et al. Adaptive horizontal transfer of a bacterial gene to an invasive insect pest of coffee. Proc. Natl. Acad. Sci. USA 109 (2012), 4197–4202.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 4197-4202
-
-
Acuña, R.1
Padilla, B.E.2
Florez-Ramos, C.P.3
Rubio, J.D.4
Herrera, J.C.5
Benavides, P.6
Lee, S.-J.7
Yeats, T.H.8
Egan, A.N.9
Doyle, J.J.10
-
82
-
-
85035767319
-
Horizontal gene transfer contributes to plant evolution: the case of Agrobacterium T-DNAs
-
Quispe-Huamanquispe, D.G., Gheysen, G., Kreuze, J.F., Horizontal gene transfer contributes to plant evolution: the case of Agrobacterium T-DNAs. Front. Plant Sci., 8, 2017, 2015.
-
(2017)
Front. Plant Sci.
, vol.8
, pp. 2015
-
-
Quispe-Huamanquispe, D.G.1
Gheysen, G.2
Kreuze, J.F.3
-
83
-
-
23944475626
-
Mechanisms of, and barriers to, horizontal gene transfer between bacteria
-
Thomas, C.M., Nielsen, K.M., Mechanisms of, and barriers to, horizontal gene transfer between bacteria. Nat. Rev. Microbiol., 3, 2005, 711.
-
(2005)
Nat. Rev. Microbiol.
, vol.3
, pp. 711
-
-
Thomas, C.M.1
Nielsen, K.M.2
-
84
-
-
85062248492
-
Eukaryotic acquisition of a bacterial operon
-
e1310
-
Kominek, J., Doering, D.T., Opulente, D.A., Shen, X.-X., Zhou, X., DeVirgilio, J., Hulfachor, A.B., Groenewald, M., Mcgee, M.A., Karlen, S.D., et al. Eukaryotic acquisition of a bacterial operon. Cell 176 (2019), 1356–1366 e1310.
-
(2019)
Cell
, vol.176
, pp. 1356-1366
-
-
Kominek, J.1
Doering, D.T.2
Opulente, D.A.3
Shen, X.-X.4
Zhou, X.5
DeVirgilio, J.6
Hulfachor, A.B.7
Groenewald, M.8
Mcgee, M.A.9
Karlen, S.D.10
-
85
-
-
78650065364
-
FSY1, a horizontally transferred gene in the Saccharomyces cerevisiae EC1118 wine yeast strain, encodes a high-affinity fructose/H+ symporter
-
Galeote, V., Novo, M., Salema-Oom, M., Brion, C., Valerio, E., Goncalves, P., Dequin, S., FSY1, a horizontally transferred gene in the Saccharomyces cerevisiae EC1118 wine yeast strain, encodes a high-affinity fructose/H+ symporter. Microbiology 156 (2010), 3754–3761.
-
(2010)
Microbiology
, vol.156
, pp. 3754-3761
-
-
Galeote, V.1
Novo, M.2
Salema-Oom, M.3
Brion, C.4
Valerio, E.5
Goncalves, P.6
Dequin, S.7
-
86
-
-
85063338699
-
Reverse evolution of a classic gene network in yeast offers a competitive advantage
-
Duan, S.-F., Shi, J.-Y., Yin, Q., Zhang, R.-P., Han, P.-J., Wang, Q.-M., Bai, F.-Y., Reverse evolution of a classic gene network in yeast offers a competitive advantage. Curr. Biol. 29 (2019), 1126–1136.
-
(2019)
Curr. Biol.
, vol.29
, pp. 1126-1136
-
-
Duan, S.-F.1
Shi, J.-Y.2
Yin, Q.3
Zhang, R.-P.4
Han, P.-J.5
Wang, Q.-M.6
Bai, F.-Y.7
-
87
-
-
84907510835
-
Improving industrial yeast strains: exploiting natural and artificial diversity
-
Steensels, J., Snoek, T., Meersman, E., Nicolino, M.P., Voordeckers, K., Verstrepen, K.J., Improving industrial yeast strains: exploiting natural and artificial diversity. FEMS Microbiol. Rev. 38 (2014), 947–995.
-
(2014)
FEMS Microbiol. Rev.
, vol.38
, pp. 947-995
-
-
Steensels, J.1
Snoek, T.2
Meersman, E.3
Nicolino, M.P.4
Voordeckers, K.5
Verstrepen, K.J.6
-
88
-
-
85059798605
-
Reducing phenolic off-flavors through CRISPR-based gene editing of the FDC1 gene in Saccharomyces cerevisiae x Saccharomyces eubayanus hybrid lager beer yeasts
-
e0209124
-
Mertens, S., Gallone, B., Steensels, J., Herrera-Malaver, B., Cortebeek, J., Nolmans, R., Saels, V., Vyas, V.K., Verstrepen, K.J., Reducing phenolic off-flavors through CRISPR-based gene editing of the FDC1 gene in Saccharomyces cerevisiae x Saccharomyces eubayanus hybrid lager beer yeasts. PLoS One, 14, 2018 e0209124.
-
(2018)
PLoS One
, vol.14
-
-
Mertens, S.1
Gallone, B.2
Steensels, J.3
Herrera-Malaver, B.4
Cortebeek, J.5
Nolmans, R.6
Saels, V.7
Vyas, V.K.8
Verstrepen, K.J.9
-
89
-
-
85058780277
-
De novo domestication of wild tomato using genome editing
-
Zsögön, A., Cermak, T., Naves, E.R., Notini, M.M., Edel, K.H., Weinl, S., Freschi, L., Voytas, D.F., Kudla, J., Peres, L.E.P., De novo domestication of wild tomato using genome editing. Nat. Biotechnol. 36 (2018), 1211–1220.
-
(2018)
Nat. Biotechnol.
, vol.36
, pp. 1211-1220
-
-
Zsögön, A.1
Cermak, T.2
Naves, E.R.3
Notini, M.M.4
Edel, K.H.5
Weinl, S.6
Freschi, L.7
Voytas, D.F.8
Kudla, J.9
Peres, L.E.P.10
-
90
-
-
85054466844
-
Rapid improvement of domestication traits in an orphan crop by genome editing
-
Lemmon, Z.H., Reem, N.T., Dalrymple, J., Soyk, S., Swartwood, K.E., Rodriguez-Leal, D., Van Eck, J., Lippman, Z.B., Rapid improvement of domestication traits in an orphan crop by genome editing. Nat. Plants, 4, 2018, 766.
-
(2018)
Nat. Plants
, vol.4
, pp. 766
-
-
Lemmon, Z.H.1
Reem, N.T.2
Dalrymple, J.3
Soyk, S.4
Swartwood, K.E.5
Rodriguez-Leal, D.6
Van Eck, J.7
Lippman, Z.B.8
-
91
-
-
84963979598
-
Whole genome comparison reveals high levels of inbreeding and strain redundancy across the spectrum of commercial wine strains of Saccharomyces cerevisiae. G3: Genes, Genomes
-
Borneman, A.R., Forgan, A.H., Kolouchova, R., Fraser, J.A., Schmidt, S.A., Whole genome comparison reveals high levels of inbreeding and strain redundancy across the spectrum of commercial wine strains of Saccharomyces cerevisiae. G3: Genes, Genomes. Genetics 6 (2016), 957–971.
-
(2016)
Genetics
, vol.6
, pp. 957-971
-
-
Borneman, A.R.1
Forgan, A.H.2
Kolouchova, R.3
Fraser, J.A.4
Schmidt, S.A.5
-
92
-
-
84964389262
-
Past and future of non-Saccharomyces yeasts: from spoilage microorganisms to biotechnological tools for improving wine aroma complexity
-
Padilla, B., Gil, J.V., Manzanares, P., Past and future of non-Saccharomyces yeasts: from spoilage microorganisms to biotechnological tools for improving wine aroma complexity. Front. Microbiol., 7, 2016, 411.
-
(2016)
Front. Microbiol.
, vol.7
, pp. 411
-
-
Padilla, B.1
Gil, J.V.2
Manzanares, P.3
-
93
-
-
84928349026
-
Brettanomyces yeasts - From spoilage organisms to valuable contributors to industrial fermentations. Int. J
-
Steensels, J., Daenen, L., Malcorps, P., Derdelinckx, G., Verachtert, H., Verstrepen, K.J., Brettanomyces yeasts - From spoilage organisms to valuable contributors to industrial fermentations. Int. J. Food Microbiol. 206 (2015), 24–38.
-
(2015)
Food Microbiol.
, vol.206
, pp. 24-38
-
-
Steensels, J.1
Daenen, L.2
Malcorps, P.3
Derdelinckx, G.4
Verachtert, H.5
Verstrepen, K.J.6
-
94
-
-
85032452922
-
Physiology, ecology and industrial applications of aroma formation in yeast
-
Dzialo, M.C., Park, R., Steensels, J., Lievens, B., Verstrepen, K.J., Physiology, ecology and industrial applications of aroma formation in yeast. FEMS Microbiol. Rev. 41 (2017), S95–S128.
-
(2017)
FEMS Microbiol. Rev.
, vol.41
, pp. S95-S128
-
-
Dzialo, M.C.1
Park, R.2
Steensels, J.3
Lievens, B.4
Verstrepen, K.J.5
-
95
-
-
84907190357
-
Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication
-
Carneiro, M., Rubin, C.-J., Di Palma, F., Albert, F.W., Alfoldi, J., Barrio, A.M., Pielberg, G., Rafati, N., Sayyab, S., Turner-Maier, J., et al. Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication. Science 345 (2014), 1074–1079.
-
(2014)
Science
, vol.345
, pp. 1074-1079
-
-
Carneiro, M.1
Rubin, C.-J.2
Di Palma, F.3
Albert, F.W.4
Alfoldi, J.5
Barrio, A.M.6
Pielberg, G.7
Rafati, N.8
Sayyab, S.9
Turner-Maier, J.10
-
96
-
-
84875301605
-
The genomic signature of dog domestication reveals adaptation to a starch-rich diet
-
Axelsson, E., Ratnakumar, A., Arendt, M.-L., Maqbool, K., Webster, M.T., Perloski, M., Liberg, O., Arnemo, J.M., Hedhammar, Ã.k., Lindblad-Toh, K., The genomic signature of dog domestication reveals adaptation to a starch-rich diet. Nature, 495, 2013, 360.
-
(2013)
Nature
, vol.495
, pp. 360
-
-
Axelsson, E.1
Ratnakumar, A.2
Arendt, M.-L.3
Maqbool, K.4
Webster, M.T.5
Perloski, M.6
Liberg, O.7
Arnemo, J.M.8
Hedhammar, Ã.K.9
Lindblad-Toh, K.10
-
97
-
-
85047179716
-
Pervasive introgression facilitated domestication and adaptation in the Bos species complex
-
Wu, D.-D., Ding, X.-D., Wang, S., Wojcik, J.M., Zhang, Y., Tokarska, M.g., Li, Y., Wang, M.-S., Faruque, O., Nielsen, R., et al. Pervasive introgression facilitated domestication and adaptation in the Bos species complex. Nat. Ecol. Evol. 2 (2018), 1139–1145.
-
(2018)
Nat. Ecol. Evol.
, vol.2
, pp. 1139-1145
-
-
Wu, D.-D.1
Ding, X.-D.2
Wang, S.3
Wojcik, J.M.4
Zhang, Y.5
Tokarska, M.G.6
Li, Y.7
Wang, M.-S.8
Faruque, O.9
Nielsen, R.10
-
98
-
-
77950080740
-
Whole-genome resequencing reveals loci under selection during chicken domestication
-
Rubin, C.-J., Zody, M.C., Eriksson, J., Meadows, J.R., Sherwood, E., Webster, M.T., Jiang, L., Ingman, M., Sharpe, T., Ka, S., et al. Whole-genome resequencing reveals loci under selection during chicken domestication. Nature, 464, 2010, 587.
-
(2010)
Nature
, vol.464
, pp. 587
-
-
Rubin, C.-J.1
Zody, M.C.2
Eriksson, J.3
Meadows, J.R.4
Sherwood, E.5
Webster, M.T.6
Jiang, L.7
Ingman, M.8
Sharpe, T.9
Ka, S.10
-
99
-
-
85049574763
-
The evolutionary road from wild moth to domestic silkworm
-
Xiang, H., Liu, X., Li, M., Zhu, Y., Wang, L., Cui, Y., Liu, L., Fang, G., Qian, H., Xu, A., et al. The evolutionary road from wild moth to domestic silkworm. Nat. Ecol. Evol., 2, 2018, 1268.
-
(2018)
Nat. Ecol. Evol.
, vol.2
, pp. 1268
-
-
Xiang, H.1
Liu, X.2
Li, M.3
Zhu, Y.4
Wang, L.5
Cui, Y.6
Liu, L.7
Fang, G.8
Qian, H.9
Xu, A.10
-
100
-
-
84922519800
-
Genome-wide analysis reveals artificial selection on coat colour and reproductive traits in Chinese domestic pigs
-
Wang, C., Wang, H., Zhang, Y., Tang, Z., Li, K., Liu, B., Genome-wide analysis reveals artificial selection on coat colour and reproductive traits in Chinese domestic pigs. Mol. Ecol. Resour. 15 (2015), 414–424.
-
(2015)
Mol. Ecol. Resour.
, vol.15
, pp. 414-424
-
-
Wang, C.1
Wang, H.2
Zhang, Y.3
Tang, Z.4
Li, K.5
Liu, B.6
-
101
-
-
84922059944
-
A worldwide survey of genome sequence variation provides insight into the evolutionary history of the honeybee Apis mellifera
-
Wallberg, A., Han, F., Wellhagen, G., Dahle, B., Kawata, M., Haddad, N., Simoes, Z., Allsopp, M.H., Kandemir, I., De la Rua, P., et al. A worldwide survey of genome sequence variation provides insight into the evolutionary history of the honeybee Apis mellifera. Nat. Genet., 46, 2014, 1081.
-
(2014)
Nat. Genet.
, vol.46
, pp. 1081
-
-
Wallberg, A.1
Han, F.2
Wellhagen, G.3
Dahle, B.4
Kawata, M.5
Haddad, N.6
Simoes, Z.7
Allsopp, M.H.8
Kandemir, I.9
De la Rua, P.10
-
102
-
-
85059798087
-
Whole-genome resequencing reveals signatures of selection and timing of duck domestication
-
giy027
-
Zhang, Z., Jia, Y., Almeida, P., Mank, J.E., van Tuinen, M., Wang, Q., Jiang, Z., Chen, Y., Zhan, K., Hou, S., Whole-genome resequencing reveals signatures of selection and timing of duck domestication. Gigascience, 7, 2018 giy027.
-
(2018)
Gigascience
, vol.7
-
-
Zhang, Z.1
Jia, Y.2
Almeida, P.3
Mank, J.E.4
van Tuinen, M.5
Wang, Q.6
Jiang, Z.7
Chen, Y.8
Zhan, K.9
Hou, S.10
-
103
-
-
84938409570
-
Evolution of the grain dispersal system in barley
-
Pourkheirandish, M., Hensel, G., Kilian, B., Senthil, N., Chen, G., Sameri, M., Azhaguvel, P., Sakuma, S., Dhanagond, S., Sharma, R., Evolution of the grain dispersal system in barley. Cell 162 (2015), 527–539.
-
(2015)
Cell
, vol.162
, pp. 527-539
-
-
Pourkheirandish, M.1
Hensel, G.2
Kilian, B.3
Senthil, N.4
Chen, G.5
Sameri, M.6
Azhaguvel, P.7
Sakuma, S.8
Dhanagond, S.9
Sharma, R.10
-
104
-
-
84947087027
-
Domestication selected for deceleration of the circadian clock in cultivated tomato
-
Müller, N.A., Wijnen, C.L., Srinivasan, A., Ryngajllo, M., Ofner, I., Lin, T., Ranjan, A., West, D., Maloof, J.N., Sinha, N.R., et al. Domestication selected for deceleration of the circadian clock in cultivated tomato. Nat. Genet., 48, 2016, 89.
-
(2016)
Nat. Genet.
, vol.48
, pp. 89
-
-
Müller, N.A.1
Wijnen, C.L.2
Srinivasan, A.3
Ryngajllo, M.4
Ofner, I.5
Lin, T.6
Ranjan, A.7
West, D.8
Maloof, J.N.9
Sinha, N.R.10
-
105
-
-
33745418945
-
Selection under domestication: evidence for a sweep in the rice waxy genomic region
-
Olsen, K.M., Caicedo, A.L., Polato, N., McClung, A., McCouch, S., Purugganan, M.D., Selection under domestication: evidence for a sweep in the rice waxy genomic region. Genetics 173 (2006), 975–983.
-
(2006)
Genetics
, vol.173
, pp. 975-983
-
-
Olsen, K.M.1
Caicedo, A.L.2
Polato, N.3
McClung, A.4
McCouch, S.5
Purugganan, M.D.6
-
106
-
-
84894139721
-
Origins and domestication of cultivated banana inferred from chloroplast and nuclear genes
-
Li, L.-F., Wang, H.-Y., Zhang, C., Wang, X.-F., Shi, F.-X., Chen, W.-N., Ge, X.-J., Origins and domestication of cultivated banana inferred from chloroplast and nuclear genes. PLoS One, 8, 2013, e80502.
-
(2013)
PLoS One
, vol.8
, pp. e80502
-
-
Li, L.-F.1
Wang, H.-Y.2
Zhang, C.3
Wang, X.-F.4
Shi, F.-X.5
Chen, W.-N.6
Ge, X.-J.7
-
107
-
-
84938287526
-
GmHs1-1, encoding a calcineurin-like protein, controls hard-seededness in soybean
-
Sun, L., Miao, Z., Cai, C., Zhang, D., Zhao, M., Wu, Y., Zhang, X., Swarm, S.A., Zhou, L., Zhang, Z.J., et al. GmHs1-1, encoding a calcineurin-like protein, controls hard-seededness in soybean. Nat. Genet., 47, 2015, 939.
-
(2015)
Nat. Genet.
, vol.47
, pp. 939
-
-
Sun, L.1
Miao, Z.2
Cai, C.3
Zhang, D.4
Zhao, M.5
Wu, Y.6
Zhang, X.7
Swarm, S.A.8
Zhou, L.9
Zhang, Z.J.10
-
108
-
-
85039787838
-
Elevation of soybean seed oil content through selection for seed coat shininess
-
Zhang, D., Sun, L., Li, S., Wang, W., Ding, Y., Swarm, S.A., Li, L., Wang, X., Tang, X., Zhang, Z., et al. Elevation of soybean seed oil content through selection for seed coat shininess. Nat. Plants, 4, 2018, 30.
-
(2018)
Nat. Plants
, vol.4
, pp. 30
-
-
Zhang, D.1
Sun, L.2
Li, S.3
Wang, W.4
Ding, Y.5
Swarm, S.A.6
Li, L.7
Wang, X.8
Tang, X.9
Zhang, Z.10
-
109
-
-
85058890150
-
Genome re-sequencing reveals the evolutionary history of peach fruit edibility
-
Yu, Y., Fu, J., Xu, Y., Zhang, J., Ren, F., Zhao, H., Tian, S., Guo, W., Tu, X., Zhao, J., et al. Genome re-sequencing reveals the evolutionary history of peach fruit edibility. Nat. Commun., 9, 2018, 5404.
-
(2018)
Nat. Commun.
, vol.9
, pp. 5404
-
-
Yu, Y.1
Fu, J.2
Xu, Y.3
Zhang, J.4
Ren, F.5
Zhao, H.6
Tian, S.7
Guo, W.8
Tu, X.9
Zhao, J.10
-
110
-
-
85055136884
-
Population genomic analyses of the chocolate tree, Theobroma cacao L., provide insights into its domestication process
-
Cornejo, O.E., Yee, M.-C., Dominguez, V., Andrews, M., Sockell, A., Strandberg, E., Livingstone, D., Stack, C., Romero, A., Umaharan, P., Population genomic analyses of the chocolate tree, Theobroma cacao L., provide insights into its domestication process. Commun. Biol., 1, 2018, 167.
-
(2018)
Commun. Biol.
, vol.1
, pp. 167
-
-
Cornejo, O.E.1
Yee, M.-C.2
Dominguez, V.3
Andrews, M.4
Sockell, A.5
Strandberg, E.6
Livingstone, D.7
Stack, C.8
Romero, A.9
Umaharan, P.10
-
111
-
-
84952762164
-
Genomic signatures of domestication on neurogenetic genes in Drosophila melanogaster
-
Stanley, C.E., Kulathinal, R.J., Genomic signatures of domestication on neurogenetic genes in Drosophila melanogaster. BMC Evol. Biol., 16, 2016, 6.
-
(2016)
BMC Evol. Biol.
, vol.16
, pp. 6
-
-
Stanley, C.E.1
Kulathinal, R.J.2
-
112
-
-
84928760790
-
The laboratory domestication of Caenorhabditis elegans
-
Sterken, M.G., Snoek, L.B., Kammenga, J.E., Andersen, E.C., The laboratory domestication of Caenorhabditis elegans. Trends Genet. 31 (2015), 224–231.
-
(2015)
Trends Genet.
, vol.31
, pp. 224-231
-
-
Sterken, M.G.1
Snoek, L.B.2
Kammenga, J.E.3
Andersen, E.C.4
|