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Volumn 16, Issue 1, 2016, Pages

Genomic signatures of domestication on neurogenetic genes in Drosophila melanogaster

Author keywords

Adaptation; Behavior; Domestication genomics; Domestication syndrome; Extended haplotypes; Model organisms; Positive selection; Purifying selection

Indexed keywords

ADAPTATION; ALLELE; BEHAVIORAL RESPONSE; BRAIN; COMPARATIVE STUDY; FLY; GENE; GENETICS; GENOMICS; LABORATORY METHOD; MUTATION;

EID: 84952762164     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/s12862-015-0580-1     Document Type: Article
Times cited : (19)

References (85)
  • 1
    • 0037043719 scopus 로고    scopus 로고
    • Evolution, consequences and future of plant and animal domestication
    • 12167878 1:CAS:528:DC%2BD38XlvVyltbY%3D
    • Diamond J. Evolution, consequences and future of plant and animal domestication. Nature. 2002;418:700-7.
    • (2002) Nature , vol.418 , pp. 700-707
    • Diamond, J.1
  • 2
    • 65249176311 scopus 로고    scopus 로고
    • Animal evolution during domestication: The domesticated fox as a model
    • 19260016 2763232
    • Trut L, Oskina I, Kharlamova A. Animal evolution during domestication: the domesticated fox as a model. Bioessays. 2009;31:349-60.
    • (2009) Bioessays , vol.31 , pp. 349-360
    • Trut, L.1    Oskina, I.2    Kharlamova, A.3
  • 5
    • 60149084807 scopus 로고    scopus 로고
    • The nature of selection during plant domestication
    • 19212403 1:CAS:528:DC%2BD1MXhslCnt7s%3D
    • Purugganan MD, Fuller DQ. The nature of selection during plant domestication. Nature. 2009;457:843-8.
    • (2009) Nature , vol.457 , pp. 843-848
    • Purugganan, M.D.1    Fuller, D.Q.2
  • 7
    • 84908689021 scopus 로고    scopus 로고
    • Genomic analyses provide insights into the history of tomato breeding
    • 25305757 1:CAS:528:DC%2BC2cXhslelsLbF
    • Lin T, Zhu G, Zhang J, Xu X, Yu Q, Zheng Z, et al. Genomic analyses provide insights into the history of tomato breeding. Nat Genet. 2014;46:1220-6.
    • (2014) Nat Genet , vol.46 , pp. 1220-1226
    • Lin, T.1    Zhu, G.2    Zhang, J.3    Xu, X.4    Yu, Q.5    Zheng, Z.6
  • 8
    • 77950080740 scopus 로고    scopus 로고
    • Whole-genome resequencing reveals loci under selection during chicken domestication
    • 20220755 1:CAS:528:DC%2BC3cXivFKnsb4%3D
    • Rubin C-J, Zody MC, Eriksson J, Meadows JRS, Sherwood E, Webster MT, et al. Whole-genome resequencing reveals loci under selection during chicken domestication. Nature. 2010;464:587-91.
    • (2010) Nature , vol.464 , pp. 587-591
    • Rubin, C.-J.1    Zody, M.C.2    Eriksson, J.3    Meadows, J.R.S.4    Sherwood, E.5    Webster, M.T.6
  • 10
    • 84914690092 scopus 로고    scopus 로고
    • Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication
    • 25385592 1:CAS:528:DC%2BC2cXhvV2gsL3F 4260561
    • Montague MJ, Li G, Gandolfi B, Khan R, Aken BL, Searle SMJ, et al. Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication. Proc Natl Acad Sci U S A. 2014;111:17230-5.
    • (2014) Proc Natl Acad Sci U S A , vol.111 , pp. 17230-17235
    • Montague, M.J.1    Li, G.2    Gandolfi, B.3    Khan, R.4    Aken, B.L.5    Searle, S.M.J.6
  • 11
    • 84875301605 scopus 로고    scopus 로고
    • The genomic signature of dog domestication reveals adaptation to a starch-rich diet
    • 23354050 1:CAS:528:DC%2BC3sXhsVyis7c%3D
    • Axelsson E, Ratnakumar A, Arendt ML, Maqbool K. The genomic signature of dog domestication reveals adaptation to a starch-rich diet. Nature. 2013;495:360-4.
    • (2013) Nature , vol.495 , pp. 360-364
    • Axelsson, E.1    Ratnakumar, A.2    Arendt, M.L.3    Maqbool, K.4
  • 12
    • 84886793501 scopus 로고    scopus 로고
    • Selection for reluctance to avoid humans during the domestication of mice
    • 24034605 1:STN:280:DC%2BC3sbotVWlsg%3D%3D 4282115
    • Goto T, Tanave A, Moriwaki K, Shiroishi T, Koide T. Selection for reluctance to avoid humans during the domestication of mice. Genes Brain Behav. 2013;12:760-70.
    • (2013) Genes Brain Behav , vol.12 , pp. 760-770
    • Goto, T.1    Tanave, A.2    Moriwaki, K.3    Shiroishi, T.4    Koide, T.5
  • 13
    • 78649740727 scopus 로고    scopus 로고
    • Whole genome sequencing highlights genetic changes associated with laboratory domestication of C. Elegans
    • 21085631 2978686
    • Weber KP, De S, Kozarewa I, Turner DJ, Babu MM, de Bono M. Whole genome sequencing highlights genetic changes associated with laboratory domestication of C. elegans. PLoS ONE. 2010;5:e13922.
    • (2010) PLoS ONE , vol.5 , pp. e13922
    • Weber, K.P.1    De, S.2    Kozarewa, I.3    Turner, D.J.4    Babu, M.M.5    De Bono, M.6
  • 14
    • 84928760790 scopus 로고    scopus 로고
    • The laboratory domestication of Caenorhabditis elegans
    • 25804345 1:CAS:528:DC%2BC2MXkt1Orur4%3D
    • Sterken MG, Snoek LB, Kammenga JE, Andersen EC. The laboratory domestication of Caenorhabditis elegans. Trends Genet. 2015;31:224-31.
    • (2015) Trends Genet , vol.31 , pp. 224-231
    • Sterken, M.G.1    Snoek, L.B.2    Kammenga, J.E.3    Andersen, E.C.4
  • 15
    • 77950891446 scopus 로고    scopus 로고
    • Genetic variation of melatonin productivity in laboratory mice under domestication
    • 20308563 1:CAS:528:DC%2BC3cXkslynuro%3D 2851971
    • Kasahara T, Abe K, Mekada K, Yoshiki A, Kato T. Genetic variation of melatonin productivity in laboratory mice under domestication. Proc Natl Acad Sci U S A. 2010;107:6412-7.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 6412-6417
    • Kasahara, T.1    Abe, K.2    Mekada, K.3    Yoshiki, A.4    Kato, T.5
  • 16
    • 0027606070 scopus 로고
    • Drosophila: A life in the laboratory
    • 11623162 1:STN:280:DC%2BD3MrovFSgsQ%3D%3D
    • Kohler RE. Drosophila: A life in the laboratory. J Hist Biol. 1993;26:281-310.
    • (1993) J Hist Biol , vol.26 , pp. 281-310
    • Kohler, R.E.1
  • 17
    • 0016549514 scopus 로고
    • The introduction of Drosophila into the study of heredity and evolution: 1900-1910
    • 809381 1:STN:280:DyaE28%2FisVCjtw%3D%3D
    • Allen GE. The introduction of Drosophila into the study of heredity and evolution: 1900-1910. Isis. 1975;66:322-33.
    • (1975) Isis , vol.66 , pp. 322-333
    • Allen, G.E.1
  • 18
    • 0001927330 scopus 로고
    • Non-Disjunction as proof of the chromosome theory of heredity
    • 17245853 1:STN:280:DC%2BD2s%2FmsVaiug%3D%3D 1193656
    • Bridges CB. Non-Disjunction as proof of the chromosome theory of heredity. Genetics. 1916;1:107-63.
    • (1916) Genetics , vol.1 , pp. 107-163
    • Bridges, C.B.1
  • 20
    • 84872014607 scopus 로고    scopus 로고
    • Population genomics of sub-Saharan Drosophila melanogaster: African diversity and non-African admixture
    • 23284287 3527209
    • Pool JE, Corbett-Detig RB, Sugino RP, Stevens KA, Cardeno CM, Crepeau MW, et al. Population genomics of sub-Saharan Drosophila melanogaster: African diversity and non-African admixture. PLoS Genet. 2012;8:e1003080.
    • (2012) PLoS Genet , vol.8 , pp. e1003080
    • Pool, J.E.1    Corbett-Detig, R.B.2    Sugino, R.P.3    Stevens, K.A.4    Cardeno, C.M.5    Crepeau, M.W.6
  • 21
    • 0028847817 scopus 로고
    • Genetic adaptation to captivity and inbreeding depression in small laboratory populations of Drosophila melanogaster
    • 7705628 1:STN:280:DyaK2M3itVKltw%3D%3D 1206323
    • Latter BD, Mulley JC. Genetic adaptation to captivity and inbreeding depression in small laboratory populations of Drosophila melanogaster. Genetics. 1995;139:255-66.
    • (1995) Genetics , vol.139 , pp. 255-266
    • Latter, B.D.1    Mulley, J.C.2
  • 22
    • 0034496756 scopus 로고    scopus 로고
    • Selection on age at reproduction in Drosophila melanogaster: Female mating frequency as a correlated response
    • 11209790 1:STN:280:DC%2BD3M3jt1KhtQ%3D%3D
    • Sgro CM, Geddes G, Fowler K, Partridge L. Selection on age at reproduction in Drosophila melanogaster: Female mating frequency as a correlated response. Evolution. 2000;54:2152-5.
    • (2000) Evolution , vol.54 , pp. 2152-2155
    • Sgro, C.M.1    Geddes, G.2    Fowler, K.3    Partridge, L.4
  • 23
    • 0030725502 scopus 로고    scopus 로고
    • Rapid decline of fitness in panmictic populations of Drosophila melanogaster maintained under relaxed natural selection
    • 9371795 1:CAS:528:DyaK2sXnvFamsLw%3D 24258
    • Shabalina SA, Yampolsky LY, Kondrashov AS. Rapid decline of fitness in panmictic populations of Drosophila melanogaster maintained under relaxed natural selection. Proc Natl Acad Sci U S A. 1997;94:13034-9.
    • (1997) Proc Natl Acad Sci U S A , vol.94 , pp. 13034-13039
    • Shabalina, S.A.1    Yampolsky, L.Y.2    Kondrashov, A.S.3
  • 24
    • 33344458581 scopus 로고    scopus 로고
    • The accumulation of deleterious mutations in rice genomes: A hypothesis on the cost of domestication
    • 16443304 1:CAS:528:DC%2BD28XhvVWit7o%3D
    • Lu J, Tang T, Tang H, Huang JZ, Shi SH, Wu CI. The accumulation of deleterious mutations in rice genomes: A hypothesis on the cost of domestication. Trends Genet. 2006;22:126-31.
    • (2006) Trends Genet , vol.22 , pp. 126-131
    • Lu, J.1    Tang, T.2    Tang, H.3    Huang, J.Z.4    Shi, S.H.5    Wu, C.I.6
  • 25
    • 0020991680 scopus 로고
    • Rare variant alleles in the light of the neutral theory
    • 6599962 1:STN:280:DyaL1c7nsVejsw%3D%3D
    • Kimura M. Rare variant alleles in the light of the neutral theory. Mol Biol Evol. 1983;1:84-93.
    • (1983) Mol Biol Evol , vol.1 , pp. 84-93
    • Kimura, M.1
  • 26
    • 60349093708 scopus 로고    scopus 로고
    • Effective population size and patterns of molecular evolution and variation
    • 19204717 1:CAS:528:DC%2BD1MXhvFGlu7s%3D
    • Charlesworth B. Effective population size and patterns of molecular evolution and variation. Nat Rev Genet. 2009;10:195-205.
    • (2009) Nat Rev Genet , vol.10 , pp. 195-205
    • Charlesworth, B.1
  • 27
    • 0016491430 scopus 로고
    • On the number of segregating sites in genetical models without recombination
    • 1145509 1:STN:280:DyaE2M7pvFSquw%3D%3D
    • Watterson GA. On the number of segregating sites in genetical models without recombination. Theor Popul Biol. 1975;7:256-76.
    • (1975) Theor Popul Biol , vol.7 , pp. 256-276
    • Watterson, G.A.1
  • 28
    • 84904258306 scopus 로고    scopus 로고
    • Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines
    • 24714809 1:CAS:528:DC%2BC2cXhtFCmsL7F 4079974
    • Huang W, Massouras A, Inoue Y, Peiffer J, Ràmia M, Tarone AM, et al. Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines. Genome Res. 2014;24:1193-208.
    • (2014) Genome Res , vol.24 , pp. 1193-1208
    • Huang, W.1    Massouras, A.2    Inoue, Y.3    Peiffer, J.4    Ràmia, M.5    Tarone, A.M.6
  • 29
    • 75649094779 scopus 로고    scopus 로고
    • Population genomic inferences from sparse high-throughput sequencing of two populations of Drosophila melanogaster
    • 20333214 2839279
    • Sackton TB, Kulathinal RJ, Bergman CM, Quinlan AR, Dopman EB, Carneiro M, et al. Population genomic inferences from sparse high-throughput sequencing of two populations of Drosophila melanogaster. Genome Biol Evol. 2009;1:449-65.
    • (2009) Genome Biol Evol , vol.1 , pp. 449-465
    • Sackton, T.B.1    Kulathinal, R.J.2    Bergman, C.M.3    Quinlan, A.R.4    Dopman, E.B.5    Carneiro, M.6
  • 30
    • 0034967711 scopus 로고    scopus 로고
    • Regions of lower crossing over harbor more rare variants in African populations of Drosophila melanogaster
    • 11404330 1:CAS:528:DC%2BD3MXltFSis7Y%3D 1461661
    • Andolfatto P, Przeworski M. Regions of lower crossing over harbor more rare variants in African populations of Drosophila melanogaster. Genetics. 2001;158:657-65.
    • (2001) Genetics , vol.158 , pp. 657-665
    • Andolfatto, P.1    Przeworski, M.2
  • 31
    • 84966190257 scopus 로고
    • Environment-dependent fitness differences in Drosophila melanogaster - Temperature, domestication and the alcohol-dehydrogenase locus
    • Kohane MJ, Parsons PA. Environment-dependent fitness differences in Drosophila melanogaster - Temperature, domestication and the alcohol-dehydrogenase locus. Heredity. 1986;57:289-304.
    • (1986) Heredity , vol.57 , pp. 289-304
    • Kohane, M.J.1    Parsons, P.A.2
  • 32
    • 0033800084 scopus 로고    scopus 로고
    • Evolutionary responses of the life history of wild-caught Drosophila melanogaster to two standard methods of laboratory culture
    • Sgro CM, Partridge L. Evolutionary responses of the life history of wild-caught Drosophila melanogaster to two standard methods of laboratory culture. Am Nat. 2000;156:341-53.
    • (2000) Am Nat , vol.156 , pp. 341-353
    • Sgro, C.M.1    Partridge, L.2
  • 33
    • 0037247182 scopus 로고    scopus 로고
    • Natural selection in a bottle
    • 12650462
    • Houle D, Rowe L. Natural selection in a bottle. Am Nat. 2003;161:50-67.
    • (2003) Am Nat , vol.161 , pp. 50-67
    • Houle, D.1    Rowe, L.2
  • 35
    • 84995132678 scopus 로고
    • Modeling problems in conservation genetics using captive Drosophila populations - Rapid genetic adaptation to captivity
    • Frankham R, Loebel DA. Modeling problems in conservation genetics using captive Drosophila populations - Rapid genetic adaptation to captivity. Zoo Biol. 1992;11:333-42.
    • (1992) Zoo Biol , vol.11 , pp. 333-342
    • Frankham, R.1    Loebel, D.A.2
  • 36
    • 0001528830 scopus 로고    scopus 로고
    • Captive breeding and the genetic fitness of natural populations
    • Lynch M, O'Hely M. Captive breeding and the genetic fitness of natural populations. Conserv Genet. 2001;2:363-78.
    • (2001) Conserv Genet , vol.2 , pp. 363-378
    • Lynch, M.1    O'Hely, M.2
  • 37
    • 84949461386 scopus 로고    scopus 로고
    • The accumulation of deleterious mutations as a consequence of domestication and improvement in sunflowers and other Compositae crops
    • 25939650
    • Renaut S, Rieseberg LH. The accumulation of deleterious mutations as a consequence of domestication and improvement in sunflowers and other Compositae crops. Mol Biol Evol. 2015;32:2273-83.
    • (2015) Mol Biol Evol , vol.32 , pp. 2273-2283
    • Renaut, S.1    Rieseberg, L.H.2
  • 38
    • 34447546660 scopus 로고    scopus 로고
    • The distribution of fitness effects of new mutations
    • 17637733 1:CAS:528:DC%2BD2sXnvVekt7s%3D
    • Eyre-Walker A, Keightley PD. The distribution of fitness effects of new mutations. Nat Rev Genet. 2007;8:610-8.
    • (2007) Nat Rev Genet , vol.8 , pp. 610-618
    • Eyre-Walker, A.1    Keightley, P.D.2
  • 39
    • 0027043864 scopus 로고
    • Rapid loss of genetic-variation in large captive populations of Drosophila flies - Implications for the genetic management of captive populations
    • Briscoe DA, Malpica JM, Robertson A, Smith GJ, Frankham R, Banks RG, et al. Rapid loss of genetic-variation in large captive populations of Drosophila flies - Implications for the genetic management of captive populations. Conserv Biol. 1992;6:416-25.
    • (1992) Conserv Biol , vol.6 , pp. 416-425
    • Briscoe, D.A.1    Malpica, J.M.2    Robertson, A.3    Smith, G.J.4    Frankham, R.5    Banks, R.G.6
  • 40
    • 0001107075 scopus 로고
    • Genetic correlation structure of life history variables in outbred, wild Drosophila melanogaster: Effects of photoperiod regimen
    • Giesel JT. Genetic correlation structure of life history variables in outbred, wild Drosophila melanogaster: effects of photoperiod regimen. Am Nat. 1986;128:593-603.
    • (1986) Am Nat. , vol.128 , pp. 593-603
    • Giesel, J.T.1
  • 41
    • 84995171734 scopus 로고
    • Inbreeding and fitness in captive populations - Lessons from Drosophila
    • Miller PS, Hedrick PW. Inbreeding and fitness in captive populations - Lessons from Drosophila. Zoo Biol. 1993;12:333-51.
    • (1993) Zoo Biol , vol.12 , pp. 333-351
    • Miller, P.S.1    Hedrick, P.W.2
  • 42
    • 84878584041 scopus 로고    scopus 로고
    • Reciprocal cross differences in Drosophila melanogaster longevity: An evidence for non-genomic effects in heterosis phenomenon?
    • 23529279 1:CAS:528:DC%2BC3sXotVSksr4%3D
    • Vaiserman AM, Zabuga OG, Kolyada AK, Pisaruk AV, Kozeretska IA. Reciprocal cross differences in Drosophila melanogaster longevity: An evidence for non-genomic effects in heterosis phenomenon? Biogerontology. 2013;14:153-63.
    • (2013) Biogerontology , vol.14 , pp. 153-163
    • Vaiserman, A.M.1    Zabuga, O.G.2    Kolyada, A.K.3    Pisaruk, A.V.4    Kozeretska, I.A.5
  • 43
    • 67650064592 scopus 로고    scopus 로고
    • Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines
    • Keightley PD, Trivedi U, Thomson M, Oliver F. Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines. Genome Res. 2009;190:1195-201.
    • (2009) Genome Res , vol.190 , pp. 1195-1201
    • Keightley, P.D.1    Trivedi, U.2    Thomson, M.3    Oliver, F.4
  • 44
    • 0027935669 scopus 로고
    • The evolutionary history of the P-family of transposable elements
    • 7963451 1:CAS:528:DyaK2MXhvFyit7o%3D
    • Kidwell MG. The evolutionary history of the P-family of transposable elements. J Hered. 1994;85:339-46.
    • (1994) J Hered , vol.85 , pp. 339-346
    • Kidwell, M.G.1
  • 46
    • 0034036321 scopus 로고    scopus 로고
    • Genetic, behavioral and environmental determinants of male longevity in Caenorhabditis elegans
    • 10747056 1:STN:280:DC%2BD3czpsFOhsQ%3D%3D 1461011
    • Gems D, Riddle DL. Genetic, behavioral and environmental determinants of male longevity in Caenorhabditis elegans. Genetics. 2000;154:1597-610.
    • (2000) Genetics , vol.154 , pp. 1597-1610
    • Gems, D.1    Riddle, D.L.2
  • 47
    • 84907374005 scopus 로고    scopus 로고
    • Mapping ecologically relevant social behaviours by gene knockout in wild mice
    • 25090970 1:CAS:528:DC%2BC2cXitVWgsb%2FL
    • Chalfin L, Dayan M, Levy DR, Austad SN, Miller RA, Iraqi FA, et al. Mapping ecologically relevant social behaviours by gene knockout in wild mice. Nat Commun. 2014;5:4569.
    • (2014) Nat Commun , vol.5 , pp. 4569
    • Chalfin, L.1    Dayan, M.2    Levy, D.R.3    Austad, S.N.4    Miller, R.A.5    Iraqi, F.A.6
  • 48
    • 77952884290 scopus 로고    scopus 로고
    • Delayed matching-to-position performance in C57BL/6N mice
    • 20211712
    • Goto K, Kurashima R, Watanabe S. Delayed matching-to-position performance in C57BL/6N mice. Behav Processes. 2010;84:591-7.
    • (2010) Behav Processes , vol.84 , pp. 591-597
    • Goto, K.1    Kurashima, R.2    Watanabe, S.3
  • 50
    • 67849106835 scopus 로고    scopus 로고
    • The mouse resources at the RIKEN BioResource center
    • 19448331 1:CAS:528:DC%2BD1MXntFGku7w%3D
    • Yoshiki A, Ike F, Mekada K, Kitaura Y, Nakata H, Hiraiwa N, et al. The mouse resources at the RIKEN BioResource center. Exp Anim. 2009;58:85-96.
    • (2009) Exp Anim , vol.58 , pp. 85-96
    • Yoshiki, A.1    Ike, F.2    Mekada, K.3    Kitaura, Y.4    Nakata, H.5    Hiraiwa, N.6
  • 51
    • 0028965146 scopus 로고
    • Sexual isolation in Drosophila melanogaster: A possible case of incipient speciation
    • 7708677 1:CAS:528:DyaK2MXksl2kurY%3D 42249
    • Wu CI, Hollocher H, Begun DJ. Sexual isolation in Drosophila melanogaster: A possible case of incipient speciation. Proc Natl Acad Sci U S A. 1995;92:2519-23.
    • (1995) Proc Natl Acad Sci U S A , vol.92 , pp. 2519-2523
    • Wu, C.I.1    Hollocher, H.2    Begun, D.J.3
  • 52
    • 0001127592 scopus 로고
    • Patterns of speciation in Drosophila
    • Coyne JA, Orr HA. Patterns of speciation in Drosophila. Evolution. 1989;43:362.
    • (1989) Evolution , vol.43 , pp. 362
    • Coyne, J.A.1    Orr, H.A.2
  • 53
  • 54
    • 84904266596 scopus 로고    scopus 로고
    • The "domestication Syndrome" in mammals: A unified explanation based on neural crest cell behavior and genetics
    • 25024034 4096361
    • Wilkins AS, Wrangham RW, Fitch WT. The "Domestication Syndrome" in mammals: A unified explanation based on neural crest cell behavior and genetics. Genetics. 2014;197:795-808.
    • (2014) Genetics , vol.197 , pp. 795-808
    • Wilkins, A.S.1    Wrangham, R.W.2    Fitch, W.T.3
  • 55
    • 34250140738 scopus 로고
    • Das domestikationssyndrom
    • Hammer K. Das domestikationssyndrom. Die Kulturpflanze. 1984;32:11-34.
    • (1984) Die Kulturpflanze , vol.32 , pp. 11-34
    • Hammer, K.1
  • 56
    • 84952824598 scopus 로고
    • Domestication - The decline of environmental appreciation
    • Broom DM. Domestication - The decline of environmental appreciation. Nature. 1990;348:402.
    • (1990) Nature , vol.348 , pp. 402
    • Broom, D.M.1
  • 57
    • 0005835040 scopus 로고
    • Domestication of animals
    • Belyaev DK. Domestication of animals. Sci J. 1969;5:47-52.
    • (1969) Sci J , vol.5 , pp. 47-52
    • Belyaev, D.K.1
  • 58
    • 79953043801 scopus 로고    scopus 로고
    • The developmental transcriptome of Drosophila melanogaster
    • 21179090 1:CAS:528:DC%2BC3MXhtVGjtg%3D%3D 3075879
    • Graveley BR, Brooks AN, Carlson J, Duff MO, Landolin JM, Yang L, et al. The developmental transcriptome of Drosophila melanogaster. Nature. 2011;471:473-9.
    • (2011) Nature , vol.471 , pp. 473-479
    • Graveley, B.R.1    Brooks, A.N.2    Carlson, J.3    Duff, M.O.4    Landolin, J.M.5    Yang, L.6
  • 60
    • 77749246194 scopus 로고    scopus 로고
    • A new chamber for studying the behavior of Drosophila
    • Simon JC, Dickinson MH. A new chamber for studying the behavior of Drosophila. 2010;5(e8793).
    • (2010) PLoS One. , vol.5 , Issue.8793
    • Simon, J.C.1    Dickinson, M.H.2
  • 61
    • 66249138246 scopus 로고    scopus 로고
    • High-throughput ethomics in large groups of Drosophila
    • 19412169 1:CAS:528:DC%2BD1MXltlSrsbk%3D 2734963
    • Branson K, Robie AA, Bender J, Perona P, Dickinson MH. High-throughput ethomics in large groups of Drosophila. Nat Methods. 2009;6:451-7.
    • (2009) Nat Methods , vol.6 , pp. 451-457
    • Branson, K.1    Robie, A.A.2    Bender, J.3    Perona, P.4    Dickinson, M.H.5
  • 62
    • 84924966448 scopus 로고    scopus 로고
    • The Drosophila genome nexus: A population genomic resource of 623 Drosophila melanogaster genomes, including 197 from a single ancestral range population
    • 25631317 1:CAS:528:DC%2BC2MXmsFGls7Y%3D 4391556
    • Lack JB, Cardeno CM, Crepeau MW, Taylor W, Corbett-Detig RB, Stevens KA, et al. The Drosophila genome nexus: A population genomic resource of 623 Drosophila melanogaster genomes, including 197 from a single ancestral range population. Genetics. 2015;199:1229-41.
    • (2015) Genetics , vol.199 , pp. 1229-1241
    • Lack, J.B.1    Cardeno, C.M.2    Crepeau, M.W.3    Taylor, W.4    Corbett-Detig, R.B.5    Stevens, K.A.6
  • 63
    • 77949587649 scopus 로고    scopus 로고
    • Fast and accurate long-read alignment with Burrows-Wheeler transform
    • 20080505 2828108
    • Li H, Durbin R. Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics. 2010;26:589-95.
    • (2010) Bioinformatics , vol.26 , pp. 589-595
    • Li, H.1    Durbin, R.2
  • 65
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    • 20644199 1:CAS:528:DC%2BC3cXhtFeru7jM 2928508
    • McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, et al. The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 2010;20:1297-303.
    • (2010) Genome Res , vol.20 , pp. 1297-1303
    • McKenna, A.1    Hanna, M.2    Banks, E.3    Sivachenko, A.4    Cibulskis, K.5    Kernytsky, A.6
  • 66
    • 84866081815 scopus 로고    scopus 로고
    • Genomic variation in natural populations of Drosophila melanogaster
    • 22673804 1:CAS:528:DC%2BC3sXjvVCis7g%3D 3454882
    • Langley CH, Stevens K, Cardeno C, Lee YCG, Schrider DR, Pool JE, et al. Genomic variation in natural populations of Drosophila melanogaster. Genetics. 2012;192:533-98.
    • (2012) Genetics , vol.192 , pp. 533-598
    • Langley, C.H.1    Stevens, K.2    Cardeno, C.3    Lee, Y.C.G.4    Schrider, D.R.5    Pool, J.E.6
  • 68
    • 84871958299 scopus 로고    scopus 로고
    • A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence
    • 22936249 1:CAS:528:DC%2BC3sXnvV2ktw%3D%3D 3530686
    • Hu TT, Eisen MB, Thornton KR, Andolfatto P. A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence. Genome Res. 2013;23:89-98.
    • (2013) Genome Res , vol.23 , pp. 89-98
    • Hu, T.T.1    Eisen, M.B.2    Thornton, K.R.3    Andolfatto, P.4
  • 69
    • 77956193448 scopus 로고    scopus 로고
    • ProgressiveMauve: Multiple genome alignment with gene gain, loss and rearrangement
    • Darling AE, Mau B, Perna NT. progressiveMauve: Multiple genome alignment with gene gain, loss and rearrangement. PLoS One. 2010;5.
    • (2010) PLoS One. , vol.5
    • Darling, A.E.1    Mau, B.2    Perna, N.T.3
  • 71
    • 84871949803 scopus 로고    scopus 로고
    • Genome-wide patterns of natural variation reveal strong selective sweeps and ongoing genomic conflict in Drosophila mauritiana
    • 23051690 1:CAS:528:DC%2BC3sXnvV2ktQ%3D%3D 3530687
    • Nolte V, Pandey RV, Kofler R, Schlotterer C. Genome-wide patterns of natural variation reveal strong selective sweeps and ongoing genomic conflict in Drosophila mauritiana. Genome Res. 2013;23:99-110.
    • (2013) Genome Res , vol.23 , pp. 99-110
    • Nolte, V.1    Pandey, R.V.2    Kofler, R.3    Schlotterer, C.4
  • 72
    • 84883685094 scopus 로고    scopus 로고
    • Estimating and interpreting FST: The impact of rare variants
    • 23861382 1:CAS:528:DC%2BC3sXhsVOls7fN 3759727
    • Bhatia G, Patterson N, Sankararaman S, Price AL. Estimating and interpreting FST: The impact of rare variants. Genome Res. 2013;23:1514-21.
    • (2013) Genome Res , vol.23 , pp. 1514-1521
    • Bhatia, G.1    Patterson, N.2    Sankararaman, S.3    Price, A.L.4
  • 73
    • 0026709389 scopus 로고
    • Estimation of levels of gene flow from DNA sequence data
    • 1427045 1:CAS:528:DyaK3sXhsVSku7o%3D 1205159
    • Hudson RR, Slatkin M, Maddison WP. Estimation of levels of gene flow from DNA sequence data. Genetics. 1992;132:583-9.
    • (1992) Genetics , vol.132 , pp. 583-589
    • Hudson, R.R.1    Slatkin, M.2    Maddison, W.P.3
  • 74
    • 0016197604 scopus 로고
    • Amino-acid difference formula to help explain protein evolution
    • 4843792 1:CAS:528:DyaE2cXlsVOiuro%3D
    • Grantham R. Amino-acid difference formula to help explain protein evolution. Science. 1974;185:862-4.
    • (1974) Science , vol.185 , pp. 862-864
    • Grantham, R.1
  • 75
    • 38649096895 scopus 로고    scopus 로고
    • Codon usage in twelve species of Drosophila
    • 18005411 2213667
    • Vicario S, Moriyama EN, Powell JR. Codon usage in twelve species of Drosophila. BMC Evol Biol. 2007;7:226.
    • (2007) BMC Evol Biol , vol.7 , pp. 226
    • Vicario, S.1    Moriyama, E.N.2    Powell, J.R.3
  • 76
    • 0001884644 scopus 로고
    • Individual comparisons by ranking methods
    • Wilcoxon F. Individual comparisons by ranking methods. Biometrics Bulletin. 1945;1:80-3.
    • (1945) Biometrics Bulletin , vol.1 , pp. 80-83
    • Wilcoxon, F.1
  • 77
    • 84870330188 scopus 로고    scopus 로고
    • Strong signatures of selection in the domestic pig genome
    • 23151514 1:CAS:528:DC%2BC38XhvVChurrN 3511700
    • Rubin CJ, Megens HJ, Barrio AM. Strong signatures of selection in the domestic pig genome. Proc Natl Acad Sci USA. 2012;109:19529-36.
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. 19529-19536
    • Rubin, C.J.1    Megens, H.J.2    Barrio, A.M.3
  • 78
    • 84907190357 scopus 로고    scopus 로고
    • Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication
    • 25170157 1:CAS:528:DC%2BC2cXhsValsb3O
    • Carneiro M, Rubin C-J, Di Palma F, Albert FW, Alföldi J, Barrio AM, et al. Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication. Science. 2014;345:1074-9.
    • (2014) Science , vol.345 , pp. 1074-1079
    • Carneiro, M.1    Rubin, C.-J.2    Di Palma, F.3    Albert, F.W.4    Alföldi, J.5    Barrio, A.M.6
  • 79
    • 0023375195 scopus 로고
    • The Neighbor-Joining method - A new method for reconstructing phylogenetic trees
    • 3447015 1:STN:280:DyaL1c7ovFSjsA%3D%3D
    • Saitou N, Nei M. The Neighbor-Joining method - A new method for reconstructing phylogenetic trees. Mol Biol Evol. 1987;4:406-25.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 80
    • 0000461280 scopus 로고
    • Confidence-limits on phylogenies - An approach using the bootstrap
    • Felsenstein J. Confidence-limits on phylogenies - An approach using the bootstrap. Evolution. 1985;39:783-91.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 81
    • 84890330527 scopus 로고    scopus 로고
    • MEGA6: Molecular evolutionary genetics analysis version 6.0
    • 24132122 1:CAS:528:DC%2BC3sXhvVKhurzP 3840312
    • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: Molecular evolutionary genetics analysis version 6.0. Mol Biol Evol. 2013;30:2725-9.
    • (2013) Mol Biol Evol , vol.30 , pp. 2725-2729
    • Tamura, K.1    Stecher, G.2    Peterson, D.3    Filipski, A.4    Kumar, S.5
  • 82
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
    • 2615629
    • Huang DW, Sherman BT, Lempicki RA. Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists. Nucl Acids Res. 2009;37:1-13.
    • (2009) Nucl Acids Res , vol.37 , pp. 1-13
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 84
    • 84876554734 scopus 로고    scopus 로고
    • FlyAtlas: Database of gene expression in the tissues of Drosophila melanogaster
    • 23203866 1:CAS:528:DC%2BC38XhvV2ksbjN 3531048
    • Robinson SW, Herzyk P, Dow JAT, Leader DP. FlyAtlas: Database of gene expression in the tissues of Drosophila melanogaster. Nucl Acids Res. 2013;41:D744-50.
    • (2013) Nucl Acids Res , vol.41 , pp. D744-D750
    • Robinson, S.W.1    Herzyk, P.2    Dow, J.A.T.3    Leader, D.P.4
  • 85
    • 4243207234 scopus 로고    scopus 로고
    • How should we explain variation in the genetic variance of traits?
    • 9720283
    • Houle D. How should we explain variation in the genetic variance of traits? Genetica. 1998;102:241-52.
    • (1998) Genetica , vol.102 , pp. 241-252
    • Houle, D.1


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