-
1
-
-
85010441095
-
Genome-based phylogeny and taxonomy of the ‘Enterobacteriales’: proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov
-
Adeolu, M., Alnajar, S., Naushad, S., S Gupta, R., Genome-based phylogeny and taxonomy of the ‘Enterobacteriales’: proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov. Int. J. Syst. Evol. Microbiol. 66 (2016), 5575–5599.
-
(2016)
Int. J. Syst. Evol. Microbiol.
, vol.66
, pp. 5575-5599
-
-
Adeolu, M.1
Alnajar, S.2
Naushad, S.3
S Gupta, R.4
-
2
-
-
84963764138
-
Horizontally acquired genes in early-diverging pathogenic fungi enable the use of host nucleosides and nucleotides
-
Alexander, W.G., Wisecaver, J.H., Rokas, A., Hittinger, C.T., Horizontally acquired genes in early-diverging pathogenic fungi enable the use of host nucleosides and nucleotides. Proc. Natl. Acad. Sci. USA 113 (2016), 4116–4121.
-
(2016)
Proc. Natl. Acad. Sci. USA
, vol.113
, pp. 4116-4121
-
-
Alexander, W.G.1
Wisecaver, J.H.2
Rokas, A.3
Hittinger, C.T.4
-
3
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W., Lipman, D.J., Basic local alignment search tool. J. Mol. Biol. 215 (1990), 403–410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
4
-
-
0038579427
-
Bacterial iron homeostasis
-
Andrews, S.C., Robinson, A.K., Rodríguez-Quiñones, F., Bacterial iron homeostasis. FEMS Microbiol. Rev. 27 (2003), 215–237.
-
(2003)
FEMS Microbiol. Rev.
, vol.27
, pp. 215-237
-
-
Andrews, S.C.1
Robinson, A.K.2
Rodríguez-Quiñones, F.3
-
5
-
-
67849122320
-
MEME SUITE: tools for motif discovery and searching
-
Bailey, T.L., Boden, M., Buske, F.A., Frith, M., Grant, C.E., Clementi, L., Ren, J., Li, W.W., Noble, W.S., MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res. 37:suppl2 (2009), W202–W208.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. W202-W208
-
-
Bailey, T.L.1
Boden, M.2
Buske, F.A.3
Frith, M.4
Grant, C.E.5
Clementi, L.6
Ren, J.7
Li, W.W.8
Noble, W.S.9
-
6
-
-
84946208401
-
Buried treasure: evolutionary perspectives on microbial iron piracy
-
Barber, M.F., Elde, N.C., Buried treasure: evolutionary perspectives on microbial iron piracy. Trends Genet. 31 (2015), 627–636.
-
(2015)
Trends Genet.
, vol.31
, pp. 627-636
-
-
Barber, M.F.1
Elde, N.C.2
-
7
-
-
84878682340
-
Inferring ancient metabolism using ancestral core metabolic models of enterobacteria
-
Baumler, D.J., Ma, B., Reed, J.L., Perna, N.T., Inferring ancient metabolism using ancestral core metabolic models of enterobacteria. BMC Syst. Biol., 7, 2013, 46.
-
(2013)
BMC Syst. Biol.
, vol.7
, pp. 46
-
-
Baumler, D.J.1
Ma, B.2
Reed, J.L.3
Perna, N.T.4
-
8
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
Blattner, F.R., Plunkett, G. 3rd, Bloch, C.A., Perna, N.T., Burland, V., Riley, M., Collado-Vides, J., Glasner, J.D., Rode, C.K., Mayhew, G.F., et al. The complete genome sequence of Escherichia coli K-12. Science 277 (1997), 1453–1462.
-
(1997)
Science
, vol.277
, pp. 1453-1462
-
-
Blattner, F.R.1
Plunkett, G.2
Bloch, C.A.3
Perna, N.T.4
Burland, V.5
Riley, M.6
Collado-Vides, J.7
Glasner, J.D.8
Rode, C.K.9
Mayhew, G.F.10
-
9
-
-
84984934475
-
Caenorhabditis elegans operons: form and function
-
Blumenthal, T., Gleason, K.S., Caenorhabditis elegans operons: form and function. Nat. Rev. Genet. 4 (2003), 112–120.
-
(2003)
Nat. Rev. Genet.
, vol.4
, pp. 112-120
-
-
Blumenthal, T.1
Gleason, K.S.2
-
10
-
-
0036888008
-
Chemical aspects of siderophore mediated iron transport
-
Boukhalfa, H., Crumbliss, A.L., Chemical aspects of siderophore mediated iron transport. Biometals 15 (2002), 325–339.
-
(2002)
Biometals
, vol.15
, pp. 325-339
-
-
Boukhalfa, H.1
Crumbliss, A.L.2
-
11
-
-
84884932088
-
Repeated loss of an anciently horizontally transferred gene cluster in Botrytis
-
Campbell, M.A., Staats, M., van Kan, J.A.L., Rokas, A., Slot, J.C., Repeated loss of an anciently horizontally transferred gene cluster in Botrytis. Mycologia 105 (2013), 1126–1134.
-
(2013)
Mycologia
, vol.105
, pp. 1126-1134
-
-
Campbell, M.A.1
Staats, M.2
van Kan, J.A.L.3
Rokas, A.4
Slot, J.C.5
-
12
-
-
36749031105
-
Discovery of Fur binding site clusters in Escherichia coli by information theory models
-
Chen, Z., Lewis, K.A., Shultzaberger, R.K., Lyakhov, I.G., Zheng, M., Doan, B., Storz, G., Schneider, T.D., Discovery of Fur binding site clusters in Escherichia coli by information theory models. Nucleic Acids Res. 35 (2007), 6762–6777.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 6762-6777
-
-
Chen, Z.1
Lewis, K.A.2
Shultzaberger, R.K.3
Lyakhov, I.G.4
Zheng, M.5
Doan, B.6
Storz, G.7
Schneider, T.D.8
-
13
-
-
0023277545
-
Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
-
Chomczynski, P., Sacchi, N., Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162 (1987), 156–159.
-
(1987)
Anal. Biochem.
, vol.162
, pp. 156-159
-
-
Chomczynski, P.1
Sacchi, N.2
-
14
-
-
84874534961
-
Gene make-up: rapid and massive intron gains after horizontal transfer of a bacterial α-amylase gene to Basidiomycetes
-
Da Lage, J.L., Binder, M., Hua-Van, A., Janeček, S., Casane, D., Gene make-up: rapid and massive intron gains after horizontal transfer of a bacterial α-amylase gene to Basidiomycetes. BMC Evol. Biol., 13, 2013, 40.
-
(2013)
BMC Evol. Biol.
, vol.13
, pp. 40
-
-
Da Lage, J.L.1
Binder, M.2
Hua-Van, A.3
Janeček, S.4
Casane, D.5
-
15
-
-
84856645414
-
Incorporation of a horizontally transferred gene into an operon during cnidarian evolution
-
Dana, C.E., Glauber, K.M., Chan, T.A., Bridge, D.M., Steele, R.E., Incorporation of a horizontally transferred gene into an operon during cnidarian evolution. PLoS ONE, 7, 2012, e31643.
-
(2012)
PLoS ONE
, vol.7
, pp. e31643
-
-
Dana, C.E.1
Glauber, K.M.2
Chan, T.A.3
Bridge, D.M.4
Steele, R.E.5
-
16
-
-
33645785104
-
A high-resolution map of transcription in the yeast genome
-
David, L., Huber, W., Granovskaia, M., Toedling, J., Palm, C.J., Bofkin, L., Jones, T., Davis, R.W., Steinmetz, L.M., A high-resolution map of transcription in the yeast genome. Proc. Natl. Acad. Sci. USA 103 (2006), 5320–5325.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 5320-5325
-
-
David, L.1
Huber, W.2
Granovskaia, M.3
Toedling, J.4
Palm, C.J.5
Bofkin, L.6
Jones, T.7
Davis, R.W.8
Steinmetz, L.M.9
-
17
-
-
0032404453
-
You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes
-
Doolittle, W.F., You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes. Trends Genet. 14 (1998), 307–311.
-
(1998)
Trends Genet.
, vol.14
, pp. 307-311
-
-
Doolittle, W.F.1
-
18
-
-
85020680875
-
Genome diversity and evolution in the budding yeasts (Saccharomycotina)
-
Dujon, B.A., Louis, E.J., Genome diversity and evolution in the budding yeasts (Saccharomycotina). Genetics 206 (2017), 717–750.
-
(2017)
Genetics
, vol.206
, pp. 717-750
-
-
Dujon, B.A.1
Louis, E.J.2
-
19
-
-
34548768028
-
Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes
-
Dunning Hotopp, J.C., Clark, M.E., Oliveira, D.C.S.G., Foster, J.M., Fischer, P., Muñoz Torres, M.C., Giebel, J.D., Kumar, N., Ishmael, N., Wang, S., et al. Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes. Science 317 (2007), 1753–1756.
-
(2007)
Science
, vol.317
, pp. 1753-1756
-
-
Dunning Hotopp, J.C.1
Clark, M.E.2
Oliveira, D.C.S.G.3
Foster, J.M.4
Fischer, P.5
Muñoz Torres, M.C.6
Giebel, J.D.7
Kumar, N.8
Ishmael, N.9
Wang, S.10
-
20
-
-
84857788331
-
Horizontal gene transfer in fungi
-
Fitzpatrick, D.A., Horizontal gene transfer in fungi. FEMS Microbiol. Lett. 329 (2012), 1–8.
-
(2012)
FEMS Microbiol. Lett.
, vol.329
, pp. 1-8
-
-
Fitzpatrick, D.A.1
-
21
-
-
84882826169
-
Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga
-
Flot, J.F., Hespeels, B., Li, X., Noel, B., Arkhipova, I., Danchin, E.G.J., Hejnol, A., Henrissat, B., Koszul, R., Aury, J.M., et al. Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga. Nature 500 (2013), 453–457.
-
(2013)
Nature
, vol.500
, pp. 453-457
-
-
Flot, J.F.1
Hespeels, B.2
Li, X.3
Noel, B.4
Arkhipova, I.5
Danchin, E.G.J.6
Hejnol, A.7
Henrissat, B.8
Koszul, R.9
Aury, J.M.10
-
22
-
-
4344631667
-
Spliced-leader RNA trans splicing in a chordate, Oikopleura dioica, with a compact genome
-
Ganot, P., Kallesøe, T., Reinhardt, R., Chourrout, D., Thompson, E.M., Spliced-leader RNA trans splicing in a chordate, Oikopleura dioica, with a compact genome. Mol. Cell. Biol. 24 (2004), 7795–7805.
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 7795-7805
-
-
Ganot, P.1
Kallesøe, T.2
Reinhardt, R.3
Chourrout, D.4
Thompson, E.M.5
-
23
-
-
0031461587
-
Identification and roles of non-pathogenic microflora associated with honey bees
-
Gilliam, M., Identification and roles of non-pathogenic microflora associated with honey bees. FEMS Microbiol. Lett. 155 (1997), 1–10.
-
(1997)
FEMS Microbiol. Lett.
, vol.155
, pp. 1-10
-
-
Gilliam, M.1
-
24
-
-
0015958009
-
Enterobacteriaceae isolated from foraging worker honey bees, Apis mellifera
-
Gilliam, M., Valentine, D.K., Enterobacteriaceae isolated from foraging worker honey bees, Apis mellifera. J. Invertebr. Pathol. 23 (1974), 38–41.
-
(1974)
J. Invertebr. Pathol.
, vol.23
, pp. 38-41
-
-
Gilliam, M.1
Valentine, D.K.2
-
25
-
-
45849089569
-
Massive horizontal gene transfer in bdelloid rotifers
-
Gladyshev, E.A., Meselson, M., Arkhipova, I.R., Massive horizontal gene transfer in bdelloid rotifers. Science 320 (2008), 1210–1213.
-
(2008)
Science
, vol.320
, pp. 1210-1213
-
-
Gladyshev, E.A.1
Meselson, M.2
Arkhipova, I.R.3
-
26
-
-
85050755822
-
Evidence for loss and reacquisition of alcoholic fermentation in a fructophilic yeast lineage
-
Gonçalves, C., Wisecaver, J.H., Kominek, J., Oom, M.S., Leandro, M.J., Shen, X.X., Opulente, D.A., Zhou, X., Peris, D., Kurtzman, C.P., et al. Evidence for loss and reacquisition of alcoholic fermentation in a fructophilic yeast lineage. eLife, 7, 2018, e33034.
-
(2018)
eLife
, vol.7
, pp. e33034
-
-
Gonçalves, C.1
Wisecaver, J.H.2
Kominek, J.3
Oom, M.S.4
Leandro, M.J.5
Shen, X.X.6
Opulente, D.A.7
Zhou, X.8
Peris, D.9
Kurtzman, C.P.10
-
27
-
-
79960264362
-
Full-length transcriptome assembly from RNA-Seq data without a reference genome
-
Grabherr, M.G., Haas, B.J., Yassour, M., Levin, J.Z., Thompson, D.A., Amit, I., Adiconis, X., Fan, L., Raychowdhury, R., Zeng, Q., et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat. Biotechnol. 29 (2011), 644–652.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 644-652
-
-
Grabherr, M.G.1
Haas, B.J.2
Yassour, M.3
Levin, J.Z.4
Thompson, D.A.5
Amit, I.6
Adiconis, X.7
Fan, L.8
Raychowdhury, R.9
Zeng, Q.10
-
28
-
-
84876266928
-
QUAST: quality assessment tool for genome assemblies
-
Gurevich, A., Saveliev, V., Vyahhi, N., Tesler, G., QUAST: quality assessment tool for genome assemblies. Bioinformatics 29 (2013), 1072–1075.
-
(2013)
Bioinformatics
, vol.29
, pp. 1072-1075
-
-
Gurevich, A.1
Saveliev, V.2
Vyahhi, N.3
Tesler, G.4
-
29
-
-
51849144248
-
Siderophores in fungal physiology and virulence
-
Haas, H., Eisendle, M., Turgeon, B.G., Siderophores in fungal physiology and virulence. Annu. Rev. Phytopathol. 46 (2008), 149–187.
-
(2008)
Annu. Rev. Phytopathol.
, vol.46
, pp. 149-187
-
-
Haas, H.1
Eisendle, M.2
Turgeon, B.G.3
-
30
-
-
0024323555
-
Bacterial conjugative plasmids mobilize DNA transfer between bacteria and yeast
-
Heinemann, J.A., Sprague, G.F. Jr., Bacterial conjugative plasmids mobilize DNA transfer between bacteria and yeast. Nature 340 (1989), 205–209.
-
(1989)
Nature
, vol.340
, pp. 205-209
-
-
Heinemann, J.A.1
Sprague, G.F.2
-
31
-
-
35148863240
-
Gene duplication and the adaptive evolution of a classic genetic switch
-
Hittinger, C.T., Carroll, S.B., Gene duplication and the adaptive evolution of a classic genetic switch. Nature 449 (2007), 677–681.
-
(2007)
Nature
, vol.449
, pp. 677-681
-
-
Hittinger, C.T.1
Carroll, S.B.2
-
32
-
-
84055178433
-
MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
-
Holt, C., Yandell, M., MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects. BMC Bioinformatics, 12, 2011, 491.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 491
-
-
Holt, C.1
Yandell, M.2
-
33
-
-
84924289562
-
Intron evolution in Saccharomycetaceae
-
Hooks, K.B., Delneri, D., Griffiths-Jones, S., Intron evolution in Saccharomycetaceae. Genome Biol. Evol. 6 (2014), 2543–2556.
-
(2014)
Genome Biol. Evol.
, vol.6
, pp. 2543-2556
-
-
Hooks, K.B.1
Delneri, D.2
Griffiths-Jones, S.3
-
34
-
-
84987673767
-
Repeated replacement of an intrabacterial symbiont in the tripartite nested mealybug symbiosis
-
Husnik, F., McCutcheon, J.P., Repeated replacement of an intrabacterial symbiont in the tripartite nested mealybug symbiosis. Proc. Natl. Acad. Sci. USA 113 (2016), E5416–E5424.
-
(2016)
Proc. Natl. Acad. Sci. USA
, vol.113
, pp. E5416-E5424
-
-
Husnik, F.1
McCutcheon, J.P.2
-
35
-
-
85043706978
-
Functional horizontal gene transfer from bacteria to eukaryotes
-
Husnik, F., McCutcheon, J.P., Functional horizontal gene transfer from bacteria to eukaryotes. Nat. Rev. Microbiol. 16 (2018), 67–79.
-
(2018)
Nat. Rev. Microbiol.
, vol.16
, pp. 67-79
-
-
Husnik, F.1
McCutcheon, J.P.2
-
36
-
-
84879348435
-
Horizontal gene transfer from diverse bacteria to an insect genome enables a tripartite nested mealybug symbiosis
-
Husnik, F., Nikoh, N., Koga, R., Ross, L., Duncan, R.P., Fujie, M., Tanaka, M., Satoh, N., Bachtrog, D., Wilson, A.C.C., et al. Horizontal gene transfer from diverse bacteria to an insect genome enables a tripartite nested mealybug symbiosis. Cell 153 (2013), 1567–1578.
-
(2013)
Cell
, vol.153
, pp. 1567-1578
-
-
Husnik, F.1
Nikoh, N.2
Koga, R.3
Ross, L.4
Duncan, R.P.5
Fujie, M.6
Tanaka, M.7
Satoh, N.8
Bachtrog, D.9
Wilson, A.C.C.10
-
37
-
-
84875619226
-
MAFFT multiple sequence alignment software version 7: improvements in performance and usability
-
Katoh, K., Standley, D.M., MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol. Biol. Evol. 30 (2013), 772–780.
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 772-780
-
-
Katoh, K.1
Standley, D.M.2
-
38
-
-
47649104484
-
Horizontal gene transfer in eukaryotic evolution
-
Keeling, P.J., Palmer, J.D., Horizontal gene transfer in eukaryotic evolution. Nat. Rev. Genet. 9 (2008), 605–618.
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 605-618
-
-
Keeling, P.J.1
Palmer, J.D.2
-
39
-
-
77951120000
-
Alternative splicing and evolution: diversification, exon definition and function
-
Keren, H., Lev-Maor, G., Ast, G., Alternative splicing and evolution: diversification, exon definition and function. Nat. Rev. Genet. 11 (2010), 345–355.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 345-355
-
-
Keren, H.1
Lev-Maor, G.2
Ast, G.3
-
40
-
-
44649170477
-
Evidence for horizontal transfer of a secondary metabolite gene cluster between fungi
-
Khaldi, N., Collemare, J., Lebrun, M.H., Wolfe, K.H., Evidence for horizontal transfer of a secondary metabolite gene cluster between fungi. Genome Biol., 9, 2008, R18.
-
(2008)
Genome Biol.
, vol.9
, pp. R18
-
-
Khaldi, N.1
Collemare, J.2
Lebrun, M.H.3
Wolfe, K.H.4
-
41
-
-
0037195120
-
Genome fragment of Wolbachia endosymbiont transferred to X chromosome of host insect
-
Kondo, N., Nikoh, N., Ijichi, N., Shimada, M., Fukatsu, T., Genome fragment of Wolbachia endosymbiont transferred to X chromosome of host insect. Proc. Natl. Acad. Sci. USA 99 (2002), 14280–14285.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 14280-14285
-
-
Kondo, N.1
Nikoh, N.2
Ijichi, N.3
Shimada, M.4
Fukatsu, T.5
-
42
-
-
2942544417
-
Gene finding in novel genomes
-
Korf, I., Gene finding in novel genomes. BMC Bioinformatics, 5, 2004, 59.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 59
-
-
Korf, I.1
-
43
-
-
84931584818
-
ExaML version 3: a tool for phylogenomic analyses on supercomputers
-
Kozlov, A.M., Aberer, A.J., Stamatakis, A., ExaML version 3: a tool for phylogenomic analyses on supercomputers. Bioinformatics 31 (2015), 2577–2579.
-
(2015)
Bioinformatics
, vol.31
, pp. 2577-2579
-
-
Kozlov, A.M.1
Aberer, A.J.2
Stamatakis, A.3
-
44
-
-
85055581175
-
Functional and evolutionary characterization of a secondary metabolite gene cluster in budding yeasts
-
Krause, D.J., Kominek, J., Opulente, D.A., Shen, X.X., Zhou, X., Langdon, Q.K., DeVirgilio, J., Hulfachor, A.B., Kurtzman, C.P., Rokas, A., Hittinger, C.T., Functional and evolutionary characterization of a secondary metabolite gene cluster in budding yeasts. Proc. Natl. Acad. Sci. USA 115 (2018), 11030–11035.
-
(2018)
Proc. Natl. Acad. Sci. USA
, vol.115
, pp. 11030-11035
-
-
Krause, D.J.1
Kominek, J.2
Opulente, D.A.3
Shen, X.X.4
Zhou, X.5
Langdon, Q.K.6
DeVirgilio, J.7
Hulfachor, A.B.8
Kurtzman, C.P.9
Rokas, A.10
Hittinger, C.T.11
-
45
-
-
0035735248
-
Biogeography of the yeasts of ephemeral flowers and their insects
-
Lachance, M.A., Starmer, W.T., Rosa, C.A., Bowles, J.M., Barker, J.S.F., Janzen, D.H., Biogeography of the yeasts of ephemeral flowers and their insects. FEMS Yeast Res. 1 (2001), 1–8.
-
(2001)
FEMS Yeast Res.
, vol.1
, pp. 1-8
-
-
Lachance, M.A.1
Starmer, W.T.2
Rosa, C.A.3
Bowles, J.M.4
Barker, J.S.F.5
Janzen, D.H.6
-
46
-
-
0029847554
-
Selfish operons: horizontal transfer may drive the evolution of gene clusters
-
Lawrence, J.G., Roth, J.R., Selfish operons: horizontal transfer may drive the evolution of gene clusters. Genetics 143 (1996), 1843–1860.
-
(1996)
Genetics
, vol.143
, pp. 1843-1860
-
-
Lawrence, J.G.1
Roth, J.R.2
-
47
-
-
45849154166
-
An improved general amino acid replacement matrix
-
Le, S.Q., Gascuel, O., An improved general amino acid replacement matrix. Mol. Biol. Evol. 25 (2008), 1307–1320.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 1307-1320
-
-
Le, S.Q.1
Gascuel, O.2
-
48
-
-
34948820655
-
The hotdog thioesterase EntH (YbdB) plays a role in vivo in optimal enterobactin biosynthesis by interacting with the ArCP domain of EntB
-
Leduc, D., Battesti, A., Bouveret, E., The hotdog thioesterase EntH (YbdB) plays a role in vivo in optimal enterobactin biosynthesis by interacting with the ArCP domain of EntB. J. Bacteriol. 189 (2007), 7112–7126.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 7112-7126
-
-
Leduc, D.1
Battesti, A.2
Bouveret, E.3
-
49
-
-
0037219237
-
Use of CAS-agar plate modified to study the effect of different variables on the siderophore production by Aspergillus
-
Machuca, A., Milagres, A.M.F., Use of CAS-agar plate modified to study the effect of different variables on the siderophore production by Aspergillus. Lett. Appl. Microbiol. 36 (2003), 177–181.
-
(2003)
Lett. Appl. Microbiol.
, vol.36
, pp. 177-181
-
-
Machuca, A.1
Milagres, A.M.F.2
-
50
-
-
72449164089
-
Acquisition of prokaryotic genes by fungal genomes
-
Marcet-Houben, M., Gabaldón, T., Acquisition of prokaryotic genes by fungal genomes. Trends Genet. 26 (2010), 5–8.
-
(2010)
Trends Genet.
, vol.26
, pp. 5-8
-
-
Marcet-Houben, M.1
Gabaldón, T.2
-
51
-
-
58449125407
-
Genomics and evolution of heritable bacterial symbionts
-
Moran, N.A., McCutcheon, J.P., Nakabachi, A., Genomics and evolution of heritable bacterial symbionts. Annu. Rev. Genet. 42 (2008), 165–190.
-
(2008)
Annu. Rev. Genet.
, vol.42
, pp. 165-190
-
-
Moran, N.A.1
McCutcheon, J.P.2
Nakabachi, A.3
-
52
-
-
79961172692
-
The intronome of budding yeasts
-
Neuvéglise, C., Marck, C., Gaillardin, C., The intronome of budding yeasts. C. R. Biol. 334 (2011), 662–670.
-
(2011)
C. R. Biol.
, vol.334
, pp. 662-670
-
-
Neuvéglise, C.1
Marck, C.2
Gaillardin, C.3
-
53
-
-
84922362345
-
IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies
-
Nguyen, L.T., Schmidt, H.A., von Haeseler, A., Minh, B.Q., IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol. Biol. Evol. 32 (2015), 268–274.
-
(2015)
Mol. Biol. Evol.
, vol.32
, pp. 268-274
-
-
Nguyen, L.T.1
Schmidt, H.A.2
von Haeseler, A.3
Minh, B.Q.4
-
54
-
-
39049085373
-
Wolbachia genome integrated in an insect chromosome: evolution and fate of laterally transferred endosymbiont genes
-
Nikoh, N., Tanaka, K., Shibata, F., Kondo, N., Hizume, M., Shimada, M., Fukatsu, T., Wolbachia genome integrated in an insect chromosome: evolution and fate of laterally transferred endosymbiont genes. Genome Res. 18 (2008), 272–280.
-
(2008)
Genome Res.
, vol.18
, pp. 272-280
-
-
Nikoh, N.1
Tanaka, K.2
Shibata, F.3
Kondo, N.4
Hizume, M.5
Shimada, M.6
Fukatsu, T.7
-
55
-
-
0642312313
-
Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ
-
Omelchenko, M.V., Makarova, K.S., Wolf, Y.I., Rogozin, I.B., Koonin, E.V., Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ. Genome Biol., 4, 2003, R55.
-
(2003)
Genome Biol.
, vol.4
, pp. R55
-
-
Omelchenko, M.V.1
Makarova, K.S.2
Wolf, Y.I.3
Rogozin, I.B.4
Koonin, E.V.5
-
56
-
-
84877574893
-
Extensive transcriptional heterogeneity revealed by isoform profiling
-
Pelechano, V., Wei, W., Steinmetz, L.M., Extensive transcriptional heterogeneity revealed by isoform profiling. Nature 497 (2013), 127–131.
-
(2013)
Nature
, vol.497
, pp. 127-131
-
-
Pelechano, V.1
Wei, W.2
Steinmetz, L.M.3
-
57
-
-
34250788161
-
O-CAS, a fast and universal method for siderophore detection
-
Pérez-Miranda, S., Cabirol, N., George-Téllez, R., Zamudio-Rivera, L.S., Fernández, F.J., O-CAS, a fast and universal method for siderophore detection. J. Microbiol. Methods 70 (2007), 127–131.
-
(2007)
J. Microbiol. Methods
, vol.70
, pp. 127-131
-
-
Pérez-Miranda, S.1
Cabirol, N.2
George-Téllez, R.3
Zamudio-Rivera, L.S.4
Fernández, F.J.5
-
58
-
-
84924377038
-
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
-
Pertea, M., Pertea, G.M., Antonescu, C.M., Chang, T.C., Mendell, J.T., Salzberg, S.L., StringTie enables improved reconstruction of a transcriptome from RNA-seq reads. Nat. Biotechnol. 33 (2015), 290–295.
-
(2015)
Nat. Biotechnol.
, vol.33
, pp. 290-295
-
-
Pertea, M.1
Pertea, G.M.2
Antonescu, C.M.3
Chang, T.C.4
Mendell, J.T.5
Salzberg, S.L.6
-
59
-
-
84885390419
-
Birth, death and horizontal transfer of the fumonisin biosynthetic gene cluster during the evolutionary diversification of Fusarium
-
Proctor, R.H., Van Hove, F., Susca, A., Stea, G., Busman, M., van der Lee, T., Waalwijk, C., Moretti, A., Ward, T.J., Birth, death and horizontal transfer of the fumonisin biosynthetic gene cluster during the evolutionary diversification of Fusarium. Mol. Microbiol. 90 (2013), 290–306.
-
(2013)
Mol. Microbiol.
, vol.90
, pp. 290-306
-
-
Proctor, R.H.1
Van Hove, F.2
Susca, A.3
Stea, G.4
Busman, M.5
van der Lee, T.6
Waalwijk, C.7
Moretti, A.8
Ward, T.J.9
-
60
-
-
33748455342
-
Evolution of filamentous plant pathogens: gene exchange across eukaryotic kingdoms
-
Richards, T.A., Dacks, J.B., Jenkinson, J.M., Thornton, C.R., Talbot, N.J., Evolution of filamentous plant pathogens: gene exchange across eukaryotic kingdoms. Curr. Biol. 16 (2006), 1857–1864.
-
(2006)
Curr. Biol.
, vol.16
, pp. 1857-1864
-
-
Richards, T.A.1
Dacks, J.B.2
Jenkinson, J.M.3
Thornton, C.R.4
Talbot, N.J.5
-
61
-
-
79957706147
-
Gene transfer into the fungi
-
Richards, T.A., Leonard, G., Soanes, D.M., Talbot, N.J., Gene transfer into the fungi. Fungal Biol. Rev. 25 (2011), 98–110.
-
(2011)
Fungal Biol. Rev.
, vol.25
, pp. 98-110
-
-
Richards, T.A.1
Leonard, G.2
Soanes, D.M.3
Talbot, N.J.4
-
62
-
-
80053058594
-
Horizontal gene transfer facilitated the evolution of plant parasitic mechanisms in the oomycetes
-
Richards, T.A., Soanes, D.M., Jones, M.D.M., Vasieva, O., Leonard, G., Paszkiewicz, K., Foster, P.G., Hall, N., Talbot, N.J., Horizontal gene transfer facilitated the evolution of plant parasitic mechanisms in the oomycetes. Proc. Natl. Acad. Sci. USA 108 (2011), 15258–15263.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 15258-15263
-
-
Richards, T.A.1
Soanes, D.M.2
Jones, M.D.M.3
Vasieva, O.4
Leonard, G.5
Paszkiewicz, K.6
Foster, P.G.7
Hall, N.8
Talbot, N.J.9
-
63
-
-
0031785146
-
The yeast genus Starmerella gen. nov. and Starmerella bombicola sp. nov., the teleomorph of Candida bombicola (Spencer, Gorin & Tullock) Meyer & Yarrow
-
Rosa, C.A., Lachance, M.A., The yeast genus Starmerella gen. nov. and Starmerella bombicola sp. nov., the teleomorph of Candida bombicola (Spencer, Gorin & Tullock) Meyer & Yarrow. Int. J. Syst. Evol. Microbiol. 48 (1998), 1413–1417.
-
(1998)
Int. J. Syst. Evol. Microbiol.
, vol.48
, pp. 1413-1417
-
-
Rosa, C.A.1
Lachance, M.A.2
-
64
-
-
0344256532
-
Yeast communities associated with stingless bees
-
Rosa, C.A., Lachance, M.A., Silva, J.O.C., Teixeira, A.C.P., Marini, M.M., Antonini, Y., Martins, R.P., Yeast communities associated with stingless bees. FEMS Yeast Res. 4 (2003), 271–275.
-
(2003)
FEMS Yeast Res.
, vol.4
, pp. 271-275
-
-
Rosa, C.A.1
Lachance, M.A.2
Silva, J.O.C.3
Teixeira, A.C.P.4
Marini, M.M.5
Antonini, Y.6
Martins, R.P.7
-
65
-
-
84863181640
-
Host RNAs, including transposons, are encapsidated by a eukaryotic single-stranded RNA virus
-
Routh, A., Domitrovic, T., Johnson, J.E., Host RNAs, including transposons, are encapsidated by a eukaryotic single-stranded RNA virus. Proc. Natl. Acad. Sci. USA 109 (2012), 1907–1912.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 1907-1912
-
-
Routh, A.1
Domitrovic, T.2
Johnson, J.E.3
-
66
-
-
84893738688
-
Human and plant fungal pathogens: the role of secondary metabolites
-
Scharf, D.H., Heinekamp, T., Brakhage, A.A., Human and plant fungal pathogens: the role of secondary metabolites. PLoS Pathog., 10, 2014, e1003859.
-
(2014)
PLoS Pathog.
, vol.10
, pp. e1003859
-
-
Scharf, D.H.1
Heinekamp, T.2
Brakhage, A.A.3
-
67
-
-
84920906247
-
Deciphering Fur transcriptional regulatory network highlights its complex role beyond iron metabolism in Escherichia coli
-
Seo, S.W., Kim, D., Latif, H., O'Brien, E.J., Szubin, R., Palsson, B.O., Deciphering Fur transcriptional regulatory network highlights its complex role beyond iron metabolism in Escherichia coli. Nat. Commun., 5, 2014, 4910.
-
(2014)
Nat. Commun.
, vol.5
, pp. 4910
-
-
Seo, S.W.1
Kim, D.2
Latif, H.3
O'Brien, E.J.4
Szubin, R.5
Palsson, B.O.6
-
68
-
-
77952472876
-
Iron-sulfur proteins in health and disease
-
Sheftel, A., Stehling, O., Lill, R., Iron-sulfur proteins in health and disease. Trends Endocrinol. Metab. 21 (2010), 302–314.
-
(2010)
Trends Endocrinol. Metab.
, vol.21
, pp. 302-314
-
-
Sheftel, A.1
Stehling, O.2
Lill, R.3
-
69
-
-
85008500372
-
Reconstructing the backbone of the Saccharomycotina yeast phylogeny using genome-scale data
-
Shen, X.X., Zhou, X., Kominek, J., Kurtzman, C.P., Hittinger, C.T., Rokas, A., Reconstructing the backbone of the Saccharomycotina yeast phylogeny using genome-scale data. G3 (Bethesda) 6 (2016), 3927–3939.
-
(2016)
G3 (Bethesda)
, vol.6
, pp. 3927-3939
-
-
Shen, X.X.1
Zhou, X.2
Kominek, J.3
Kurtzman, C.P.4
Hittinger, C.T.5
Rokas, A.6
-
70
-
-
85058593949
-
Tempo and mode of genome evolution in the budding yeast subphylum
-
Shen, X.X., Opulente, D.A., Kominek, J., Zhou, X., Steenwyk, J.L., Buh, K.V., Haase, M.A.B., Wisecaver, J.H., Wang, M., Doering, D.T., et al. Tempo and mode of genome evolution in the budding yeast subphylum. Cell 175 (2018), 1533–1545.
-
(2018)
Cell
, vol.175
, pp. 1533-1545
-
-
Shen, X.X.1
Opulente, D.A.2
Kominek, J.3
Zhou, X.4
Steenwyk, J.L.5
Buh, K.V.6
Haase, M.A.B.7
Wisecaver, J.H.8
Wang, M.9
Doering, D.T.10
-
71
-
-
84940907209
-
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
-
Simão, F.A., Waterhouse, R.M., Ioannidis, P., Kriventseva, E.V., Zdobnov, E.M., BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics 31 (2015), 3210–3212.
-
(2015)
Bioinformatics
, vol.31
, pp. 3210-3212
-
-
Simão, F.A.1
Waterhouse, R.M.2
Ioannidis, P.3
Kriventseva, E.V.4
Zdobnov, E.M.5
-
72
-
-
77958143617
-
The battle for iron between bacterial pathogens and their vertebrate hosts
-
Skaar, E.P., The battle for iron between bacterial pathogens and their vertebrate hosts. PLoS Pathog., 6, 2010, e1000949.
-
(2010)
PLoS Pathog.
, vol.6
, pp. e1000949
-
-
Skaar, E.P.1
-
73
-
-
77953399342
-
Multiple GAL pathway gene clusters evolved independently and by different mechanisms in fungi
-
Slot, J.C., Rokas, A., Multiple GAL pathway gene clusters evolved independently and by different mechanisms in fungi. Proc. Natl. Acad. Sci. USA 107 (2010), 10136–10141.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 10136-10141
-
-
Slot, J.C.1
Rokas, A.2
-
74
-
-
79151477225
-
Horizontal transfer of a large and highly toxic secondary metabolic gene cluster between fungi
-
Slot, J.C., Rokas, A., Horizontal transfer of a large and highly toxic secondary metabolic gene cluster between fungi. Curr. Biol. 21 (2011), 134–139.
-
(2011)
Curr. Biol.
, vol.21
, pp. 134-139
-
-
Slot, J.C.1
Rokas, A.2
-
75
-
-
84937405121
-
Horizontal gene transfer: building the web of life
-
Soucy, S.M., Huang, J., Gogarten, J.P., Horizontal gene transfer: building the web of life. Nat. Rev. Genet. 16 (2015), 472–482.
-
(2015)
Nat. Rev. Genet.
, vol.16
, pp. 472-482
-
-
Soucy, S.M.1
Huang, J.2
Gogarten, J.P.3
-
76
-
-
0027166660
-
Operons in C. elegans: polycistronic mRNA precursors are processed by trans-splicing of SL2 to downstream coding regions
-
Spieth, J., Brooke, G., Kuersten, S., Lea, K., Blumenthal, T., Operons in C. elegans: polycistronic mRNA precursors are processed by trans-splicing of SL2 to downstream coding regions. Cell 73 (1993), 521–532.
-
(1993)
Cell
, vol.73
, pp. 521-532
-
-
Spieth, J.1
Brooke, G.2
Kuersten, S.3
Lea, K.4
Blumenthal, T.5
-
77
-
-
84902190342
-
A SUF Fe-S cluster biogenesis system in the mitochondrion-related organelles of the anaerobic protist Pygsuia
-
Stairs, C.W., Eme, L., Brown, M.W., Mutsaers, C., Susko, E., Dellaire, G., Soanes, D.M., van der Giezen, M., Roger, A.J., A SUF Fe-S cluster biogenesis system in the mitochondrion-related organelles of the anaerobic protist Pygsuia. Curr. Biol. 24 (2014), 1176–1186.
-
(2014)
Curr. Biol.
, vol.24
, pp. 1176-1186
-
-
Stairs, C.W.1
Eme, L.2
Brown, M.W.3
Mutsaers, C.4
Susko, E.5
Dellaire, G.6
Soanes, D.M.7
van der Giezen, M.8
Roger, A.J.9
-
78
-
-
84899553363
-
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
-
Stamatakis, A., RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30 (2014), 1312–1313.
-
(2014)
Bioinformatics
, vol.30
, pp. 1312-1313
-
-
Stamatakis, A.1
-
79
-
-
40049091292
-
Using native and syntenically mapped cDNA alignments to improve de novo gene finding
-
Stanke, M., Diekhans, M., Baertsch, R., Haussler, D., Using native and syntenically mapped cDNA alignments to improve de novo gene finding. Bioinformatics 24 (2008), 637–644.
-
(2008)
Bioinformatics
, vol.24
, pp. 637-644
-
-
Stanke, M.1
Diekhans, M.2
Baertsch, R.3
Haussler, D.4
-
80
-
-
84959196138
-
Social wasps are a Saccharomyces mating nest
-
Stefanini, I., Dapporto, L., Berná, L., Polsinelli, M., Turillazzi, S., Cavalieri, D., Social wasps are a Saccharomyces mating nest. Proc. Natl. Acad. Sci. USA 113 (2016), 2247–2251.
-
(2016)
Proc. Natl. Acad. Sci. USA
, vol.113
, pp. 2247-2251
-
-
Stefanini, I.1
Dapporto, L.2
Berná, L.3
Polsinelli, M.4
Turillazzi, S.5
Cavalieri, D.6
-
81
-
-
44949259839
-
Crusade for iron: iron uptake in unicellular eukaryotes and its significance for virulence
-
Sutak, R., Lesuisse, E., Tachezy, J., Richardson, D.R., Crusade for iron: iron uptake in unicellular eukaryotes and its significance for virulence. Trends Microbiol. 16 (2008), 261–268.
-
(2008)
Trends Microbiol.
, vol.16
, pp. 261-268
-
-
Sutak, R.1
Lesuisse, E.2
Tachezy, J.3
Richardson, D.R.4
-
82
-
-
57149099395
-
Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training
-
Ter-Hovhannisyan, V., Lomsadze, A., Chernoff, Y.O., Borodovsky, M., Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training. Genome Res. 18 (2008), 1979–1990.
-
(2008)
Genome Res.
, vol.18
, pp. 1979-1990
-
-
Ter-Hovhannisyan, V.1
Lomsadze, A.2
Chernoff, Y.O.3
Borodovsky, M.4
-
83
-
-
33748959178
-
Comparative genomics reveals what makes an enterobacterial plant pathogen
-
Toth, I.K., Pritchard, L., Birch, P.R.J., Comparative genomics reveals what makes an enterobacterial plant pathogen. Annu. Rev. Phytopathol. 44 (2006), 305–336.
-
(2006)
Annu. Rev. Phytopathol.
, vol.44
, pp. 305-336
-
-
Toth, I.K.1
Pritchard, L.2
Birch, P.R.J.3
-
84
-
-
84863001148
-
Evolution of Fe/S cluster biogenesis in the anaerobic parasite Blastocystis
-
Tsaousis, A.D., Ollagnier de Choudens, S., Gentekaki, E., Long, S., Gaston, D., Stechmann, A., Vinella, D., Py, B., Fontecave, M., Barras, F., et al. Evolution of Fe/S cluster biogenesis in the anaerobic parasite Blastocystis. Proc. Natl. Acad. Sci. USA 109 (2012), 10426–10431.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 10426-10431
-
-
Tsaousis, A.D.1
Ollagnier de Choudens, S.2
Gentekaki, E.3
Long, S.4
Gaston, D.5
Stechmann, A.6
Vinella, D.7
Py, B.8
Fontecave, M.9
Barras, F.10
-
85
-
-
0025210560
-
mRNAs that mature through trans-splicing in Caenorhabditis elegans have a trimethylguanosine cap at their 5′ termini
-
Van Doren, K., Hirsh, D., mRNAs that mature through trans-splicing in Caenorhabditis elegans have a trimethylguanosine cap at their 5′ termini. Mol. Cell. Biol. 10 (1990), 1769–1772.
-
(1990)
Mol. Cell. Biol.
, vol.10
, pp. 1769-1772
-
-
Van Doren, K.1
Hirsh, D.2
-
86
-
-
0035241992
-
mRNA 5′-leader trans-splicing in the chordates
-
Vandenberghe, A.E., Meedel, T.H., Hastings, K.E.M., mRNA 5′-leader trans-splicing in the chordates. Genes Dev. 15 (2001), 294–303.
-
(2001)
Genes Dev.
, vol.15
, pp. 294-303
-
-
Vandenberghe, A.E.1
Meedel, T.H.2
Hastings, K.E.M.3
-
87
-
-
9244234392
-
Bacterial iron sources: from siderophores to hemophores
-
Wandersman, C., Delepelaire, P., Bacterial iron sources: from siderophores to hemophores. Annu. Rev. Microbiol. 58 (2004), 611–647.
-
(2004)
Annu. Rev. Microbiol.
, vol.58
, pp. 611-647
-
-
Wandersman, C.1
Delepelaire, P.2
-
88
-
-
0031698496
-
Plasmid-mediated gene transfer between insect-resident bacteria, Enterobacter cloacae, and plant-epiphytic bacteria, Erwinia herbicola, in guts of silkworm larvae
-
Watanabe, K., Sato, M., Plasmid-mediated gene transfer between insect-resident bacteria, Enterobacter cloacae, and plant-epiphytic bacteria, Erwinia herbicola, in guts of silkworm larvae. Curr. Microbiol. 37 (1998), 352–355.
-
(1998)
Curr. Microbiol.
, vol.37
, pp. 352-355
-
-
Watanabe, K.1
Sato, M.2
-
89
-
-
0032163987
-
Evidence for growth of strains of the plant epiphytic bacterium Erwinia herbicola and transconjugation among the bacterial strains in guts of the silkworm Bombyx mori
-
Watanabe, K., Hara, W., Sato, M., Evidence for growth of strains of the plant epiphytic bacterium Erwinia herbicola and transconjugation among the bacterial strains in guts of the silkworm Bombyx mori. J. Invertebr. Pathol. 72 (1998), 104–111.
-
(1998)
J. Invertebr. Pathol.
, vol.72
, pp. 104-111
-
-
Watanabe, K.1
Hara, W.2
Sato, M.3
-
90
-
-
84927168286
-
Fungal metabolic gene clusters-caravans traveling across genomes and environments
-
Wisecaver, J.H., Rokas, A., Fungal metabolic gene clusters-caravans traveling across genomes and environments. Front. Microbiol., 6, 2015, 161.
-
(2015)
Front. Microbiol.
, vol.6
, pp. 161
-
-
Wisecaver, J.H.1
Rokas, A.2
-
91
-
-
84982965860
-
Dynamic evolution of nitric oxide detoxifying flavohemoglobins, a family of single-protein metabolic modules in bacteria and eukaryotes
-
Wisecaver, J.H., Alexander, W.G., King, S.B., Hittinger, C.T., Rokas, A., Dynamic evolution of nitric oxide detoxifying flavohemoglobins, a family of single-protein metabolic modules in bacteria and eukaryotes. Mol. Biol. Evol. 33 (2016), 1979–1987.
-
(2016)
Mol. Biol. Evol.
, vol.33
, pp. 1979-1987
-
-
Wisecaver, J.H.1
Alexander, W.G.2
King, S.B.3
Hittinger, C.T.4
Rokas, A.5
-
92
-
-
77951820899
-
Fast and SNP-tolerant detection of complex variants and splicing in short reads
-
Wu, T.D., Nacu, S., Fast and SNP-tolerant detection of complex variants and splicing in short reads. Bioinformatics 26 (2010), 873–881.
-
(2010)
Bioinformatics
, vol.26
, pp. 873-881
-
-
Wu, T.D.1
Nacu, S.2
-
93
-
-
85036642977
-
The plastid genome of some eustigmatophyte algae harbours a bacteria-derived six-gene cluster for biosynthesis of a novel secondary metabolite
-
Yurchenko, T., Ševčíková, T., Strnad, H., Butenko, A., Eliáš, M., The plastid genome of some eustigmatophyte algae harbours a bacteria-derived six-gene cluster for biosynthesis of a novel secondary metabolite. Open Biol., 6, 2016, 160249.
-
(2016)
Open Biol.
, vol.6
, pp. 160249
-
-
Yurchenko, T.1
Ševčíková, T.2
Strnad, H.3
Butenko, A.4
Eliáš, M.5
-
94
-
-
85048089856
-
A gene transfer event suggests a long-term partnership between eustigmatophyte algae and a novel lineage of endosymbiotic bacteria
-
Yurchenko, T., Ševčíková, T., Přibyl, P., El Karkouri, K., Klimeš, V., Amaral, R., Zbránková, V., Kim, E., Raoult, D., Santos, L.M.A., Eliáš, M., A gene transfer event suggests a long-term partnership between eustigmatophyte algae and a novel lineage of endosymbiotic bacteria. ISME J. 12 (2018), 2163–2175.
-
(2018)
ISME J.
, vol.12
, pp. 2163-2175
-
-
Yurchenko, T.1
Ševčíková, T.2
Přibyl, P.3
El Karkouri, K.4
Klimeš, V.5
Amaral, R.6
Zbránková, V.7
Kim, E.8
Raoult, D.9
Santos, L.M.A.10
Eliáš, M.11
-
95
-
-
84996590420
-
In silico whole genome sequencer & analyzer (iWGS): a computational pipeline to guide the design and analysis of de novo genome sequencing studies
-
Zhou, X., Peris, D., Kominek, J., Kurtzman, C.P., Hittinger, C.T., Rokas, A., In silico whole genome sequencer & analyzer (iWGS): a computational pipeline to guide the design and analysis of de novo genome sequencing studies. G3 (Bethesda) 6 (2016), 3655–3662.
-
(2016)
G3 (Bethesda)
, vol.6
, pp. 3655-3662
-
-
Zhou, X.1
Peris, D.2
Kominek, J.3
Kurtzman, C.P.4
Hittinger, C.T.5
Rokas, A.6
|