-
1
-
-
84988864262
-
Revised estimates for the number of human and Bacteria cells in the body
-
Sender R, Fuchs S, Milo R. Revised estimates for the number of human and Bacteria cells in the body. PLoS Biol. 2016;14(8):e1002533.
-
(2016)
PLoS Biol
, vol.14
, Issue.8
, pp. e1002533
-
-
Sender, R.1
Fuchs, S.2
Milo, R.3
-
2
-
-
84871124415
-
A metagenomic insight into our gut's microbiome
-
Lepage P, Leclerc MC, Joossens M, Mondot S, Blottière HM, Raes J, et al. A metagenomic insight into our gut's microbiome. Gut. 2013;62(1):146-58.
-
(2013)
Gut.
, vol.62
, Issue.1
, pp. 146-158
-
-
Lepage, P.1
Leclerc, M.C.2
Joossens, M.3
Mondot, S.4
Blottière, H.M.5
Raes, J.6
-
3
-
-
84983032316
-
Gut microbiota profiling: Metabolomics based approach to unravel compounds affecting human health
-
Vernocchi P, Del Chierico F, Putignani L. Gut microbiota profiling: metabolomics based approach to unravel compounds affecting human health. Front Microbiol. 2016;7:1144.
-
(2016)
Front Microbiol
, vol.7
, pp. 1144
-
-
Vernocchi, P.1
Del Chierico, F.2
Putignani, L.3
-
4
-
-
84925534569
-
The role of gut microbiota in the development of type 1, obesity and type 2 diabetes mellitus
-
Tai N, Wong FS, Wen L. The role of gut microbiota in the development of type 1, obesity and type 2 diabetes mellitus. Rev Endocr Metab Disord. 2015;16(1):55-65.
-
(2015)
Rev Endocr Metab Disord
, vol.16
, Issue.1
, pp. 55-65
-
-
Tai, N.1
Wong, F.S.2
Wen, L.3
-
5
-
-
84905166372
-
The interplay between the gut microbiota and the immune system
-
Geuking MB, Köller Y, Rupp S, McCoy KD. The interplay between the gut microbiota and the immune system. Gut Microbes. 2014;5(3):411-8.
-
(2014)
Gut Microbes
, vol.5
, Issue.3
, pp. 411-418
-
-
Geuking, M.B.1
Köller, Y.2
Rupp, S.3
McCoy, K.D.4
-
6
-
-
84925486076
-
The gut microbiota and inflammatory bowel disease
-
Matsuoka K, Kanai T. The gut microbiota and inflammatory bowel disease. Semin Immunopathol. 2015;37:47-55.
-
(2015)
Semin Immunopathol
, vol.37
, pp. 47-55
-
-
Matsuoka, K.1
Kanai, T.2
-
7
-
-
84929308764
-
Microbiota in allergy and asthma and the emerging relationship with the gut microbiome
-
May 13
-
Fujimura KE, Lynch SV. Microbiota in allergy and asthma and the emerging relationship with the gut microbiome. Cell Host Microbe. 2015 May 13;17(5):592-602.
-
(2015)
Cell Host Microbe
, vol.17
, Issue.5
, pp. 592-602
-
-
Fujimura, K.E.1
Lynch, S.V.2
-
8
-
-
84905716488
-
A role for the gut microbiota in IBS
-
Aug
-
Collins SM. A role for the gut microbiota in IBS. Nat Rev Gastroenterol Hepatol. 2014 Aug;11(8):497-505.
-
(2014)
Nat Rev Gastroenterol Hepatol
, vol.11
, Issue.8
, pp. 497-505
-
-
Collins, S.M.1
-
9
-
-
84938817346
-
The oral and gut microbiomes are perturbed in rheumatoid arthritis and partly normalized after treatment
-
Aug
-
Zhang X, Zhang D, Jia H, Feng Q, Wang D, Liang D, et al. The oral and gut microbiomes are perturbed in rheumatoid arthritis and partly normalized after treatment. Nat Med. 2015 Aug;21(8):895-905.
-
(2015)
Nat Med
, vol.21
, Issue.8
, pp. 895-905
-
-
Zhang, X.1
Zhang, D.2
Jia, H.3
Feng, Q.4
Wang, D.5
Liang, D.6
-
10
-
-
84899538713
-
Diet, microbiota and autoimmune diseases
-
May
-
Vieira SM, Pagovich OE, Kriegel MA. Diet, microbiota and autoimmune diseases. Lupus. 2014 May;23(6):518-26.
-
(2014)
Lupus.
, vol.23
, Issue.6
, pp. 518-526
-
-
Vieira, S.M.1
Pagovich, O.E.2
Kriegel, M.A.3
-
11
-
-
84945137850
-
Impact of gut microbiota on obesity, diabetes, and cardiovascular disease risk
-
Miele L, Giorgio V, Alberelli MA, De Candia E, Gasbarrini A, Grieco A. Impact of gut microbiota on obesity, diabetes, and cardiovascular disease risk. Curr Cardiol Rep. 2015;17(12):120.
-
(2015)
Curr Cardiol Rep
, vol.17
, Issue.12
, pp. 120
-
-
Miele, L.1
Giorgio, V.2
Alberelli, M.A.3
De Candia, E.4
Gasbarrini, A.5
Grieco, A.6
-
12
-
-
85031869364
-
The microbiota-gut-brain axis in obesity
-
Torres-Fuentes C, Schellekens H, Dinan TG, Cryan JF. The microbiota-gut-brain axis in obesity. Lancet Gastroenterol Hepatol. 2017;2(10):747-56.
-
(2017)
Lancet Gastroenterol Hepatol
, vol.2
, Issue.10
, pp. 747-756
-
-
Torres-Fuentes, C.1
Schellekens, H.2
Dinan, T.G.3
Cryan, J.F.4
-
13
-
-
84942789153
-
Brain-gut-microbiota axis in Parkinson's disease
-
Oct 7
-
Mulak A, Bonaz B. Brain-gut-microbiota axis in Parkinson's disease. World J Gastroenterol. 2015 Oct 7;21(37):10609-20.
-
(2015)
World J Gastroenterol
, vol.21
, Issue.37
, pp. 10609-10620
-
-
Mulak, A.1
Bonaz, B.2
-
14
-
-
84976288773
-
Childhood undernutrition, the gut microbiota, and microbiota-directed therapeutics
-
Jun 24
-
Blanton LV, Barratt MJ, Charbonneau MR, Ahmed T, Gordon JI. Childhood undernutrition, the gut microbiota, and microbiota-directed therapeutics. Science. 2016 Jun 24;352(6293):1533.
-
(2016)
Science.
, vol.352
, Issue.6293
, pp. 1533
-
-
Blanton, L.V.1
Barratt, M.J.2
Charbonneau, M.R.3
Ahmed, T.4
Gordon, J.I.5
-
15
-
-
85064449998
-
When human cells meet bacteria: Precision medicine for cancers using the microbiota
-
Zhang H, Sun L. When human cells meet bacteria: precision medicine for cancers using the microbiota. Am J Cancer Res. 2018;8(7):1157-75.
-
(2018)
Am J Cancer Res
, vol.8
, Issue.7
, pp. 1157-1175
-
-
Zhang, H.1
Sun, L.2
-
16
-
-
85053112661
-
Pharmacomicrobiomics: Exploiting the drug-microbiota interactions in anticancer therapies
-
May 22
-
Panebianco C, Andriulli A, Pazienza V. Pharmacomicrobiomics: exploiting the drug-microbiota interactions in anticancer therapies. Microbiome. 2018 May 22;6(1):92.
-
(2018)
Microbiome.
, vol.6
, Issue.1
, pp. 92
-
-
Panebianco, C.1
Andriulli, A.2
Pazienza, V.3
-
17
-
-
84948451779
-
Commensal Bifidobacterium promotes antitumor immunity and facilitates anti-PD-L1 efficacy
-
Nov 27
-
Sivan A, Corrales L, Hubert N, Williams JB, Aquino-Michaels K, Earley ZM, et al. Commensal Bifidobacterium promotes antitumor immunity and facilitates anti-PD-L1 efficacy. Science. 2015 Nov 27;350(6264):1084-9.
-
(2015)
Science.
, vol.350
, Issue.6264
, pp. 1084-1089
-
-
Sivan, A.1
Corrales, L.2
Hubert, N.3
Williams, J.B.4
Aquino-Michaels, K.5
Earley, Z.M.6
-
18
-
-
84948461699
-
Anticancer immunotherapy by CTLA-4 blockade relies on the gut microbiota
-
Nov 27
-
Vétizou M, Pitt JM, Daillère R, Lepage P, Waldschmitt N, Flament C, et al. Anticancer immunotherapy by CTLA-4 blockade relies on the gut microbiota. Science. 2015 Nov 27;350(6264):1079-84.
-
(2015)
Science.
, vol.350
, Issue.6264
, pp. 1079-1084
-
-
Vétizou, M.1
Pitt, J.M.2
Daillère, R.3
Lepage, P.4
Waldschmitt, N.5
Flament, C.6
-
19
-
-
84862276328
-
-
Structure, Function and Diversity of the healthy human microbiome
-
Structure, Function and Diversity of the healthy human microbiome. Nature. 2012;486(7402):207-214.
-
(2012)
Nature.
, vol.486
, Issue.7402
, pp. 207-214
-
-
-
20
-
-
85027517201
-
Development of the gut microbiota in infancy and its impact on health in later life
-
Oct 1
-
Tanaka M, Nakayama J. Development of the gut microbiota in infancy and its impact on health in later life. Allergol Int. 2017 Oct 1;66(4):515-22.
-
(2017)
Allergol Int
, vol.66
, Issue.4
, pp. 515-522
-
-
Tanaka, M.1
Nakayama, J.2
-
21
-
-
85041957318
-
Epigenetic matters: The link between early nutrition, microbiome, and long-term health development
-
Indrio F, Martini S, Francavilla R, Corvaglia L, Cristofori F, Mastrolia SA, et al. Epigenetic matters: the link between early nutrition, microbiome, and long-term health development. Front Pediatr. 2017;5:178.
-
(2017)
Front Pediatr
, vol.5
, pp. 178
-
-
Indrio, F.1
Martini, S.2
Francavilla, R.3
Corvaglia, L.4
Cristofori, F.5
Mastrolia, S.A.6
-
22
-
-
85022198188
-
A critical assessment of the "sterile womb" and "in utero colonization" hypotheses: Implications for research on the pioneer infant microbiome
-
Perez-Muñoz ME, Arrieta M-C, Ramer-Tait AE, Walter J. A critical assessment of the "sterile womb" and "in utero colonization" hypotheses: implications for research on the pioneer infant microbiome. Microbiome. 2017;5(1):48.
-
(2017)
Microbiome.
, vol.5
, Issue.1
, pp. 48
-
-
Perez-Muñoz, M.E.1
Arrieta, M.-C.2
Ramer-Tait, A.E.3
Walter, J.4
-
23
-
-
77955386857
-
Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns
-
Jun 29
-
Dominguez-Bello MG, Costello EK, Contreras M, Magris M, Hidalgo G, Fierer N, et al. Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns. Proc Natl Acad Sci U S A. 2010 Jun 29;107(26):11971-5.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, Issue.26
, pp. 11971-11975
-
-
Dominguez-Bello, M.G.1
Costello, E.K.2
Contreras, M.3
Magris, M.4
Hidalgo, G.5
Fierer, N.6
-
24
-
-
84907686349
-
Dynamic analysis of microbiome-host omics profiles during periods of human health and disease
-
The Integrative Human Microbiome Project
-
The Integrative Human Microbiome Project. Dynamic analysis of microbiome-host omics profiles during periods of human health and disease. Cell Host Microbe. 2014;16(3):276-89.
-
(2014)
Cell Host Microbe
, vol.16
, Issue.3
, pp. 276-289
-
-
-
25
-
-
84969704060
-
Culturing of 'unculturable' human microbiota reveals novel taxa and extensive sporulation
-
May 4
-
Browne HP, Forster SC, Anonye BO, Kumar N, Neville BA, Stares MD, et al. Culturing of 'unculturable' human microbiota reveals novel taxa and extensive sporulation. Nature. 2016 May 4;533(7604):543-6.
-
(2016)
Nature.
, vol.533
, Issue.7604
, pp. 543-546
-
-
Browne, H.P.1
Forster, S.C.2
Anonye, B.O.3
Kumar, N.4
Neville, B.A.5
Stares, M.D.6
-
26
-
-
79955025122
-
Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice
-
Apr 12
-
Goodman AL, Kallstrom G, Faith JJ, Reyes A, Moore A, Dantas G, et al. Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice. PNAS. 2011 Apr 12;108(15):6252-7.
-
(2011)
PNAS.
, vol.108
, Issue.15
, pp. 6252-6257
-
-
Goodman, A.L.1
Kallstrom, G.2
Faith, J.J.3
Reyes, A.4
Moore, A.5
Dantas, G.6
-
27
-
-
84920943976
-
The rebirth of culture in microbiology through the example of Culturomics to study human gut microbiota
-
Jan
-
Lagier J-C, Hugon P, Khelaifia S, Fournier P-E, La Scola B, Raoult D. The rebirth of culture in microbiology through the example of Culturomics to study human gut microbiota. Clin Microbiol Rev. 2015 Jan;28(1):237-64.
-
(2015)
Clin Microbiol Rev
, vol.28
, Issue.1
, pp. 237-264
-
-
Lagier, J.-C.1
Hugon, P.2
Khelaifia, S.3
Fournier, P.-E.4
La Scola, B.5
Raoult, D.6
-
28
-
-
85054886468
-
The contribution of culturomics to the repertoire of isolated human bacterial and archaeal species
-
May 24
-
Bilen M, Dufour J-C, Lagier J-C, Cadoret F, Daoud Z, Dubourg G, et al. The contribution of culturomics to the repertoire of isolated human bacterial and archaeal species. Microbiome. 2018 May 24;6(1):94.
-
(2018)
Microbiome.
, vol.6
, Issue.1
, pp. 94
-
-
Bilen, M.1
Dufour, J.-C.2
Lagier, J.-C.3
Cadoret, F.4
Daoud, Z.5
Dubourg, G.6
-
29
-
-
0001271789
-
Phylogenetic structure of the prokaryotic domain: The primary kingdoms
-
Nov
-
Woese CR, Fox GE. Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proc Natl Acad Sci U S A. 1977 Nov;74(11):5088-90.
-
(1977)
Proc Natl Acad Sci U S A
, vol.74
, Issue.11
, pp. 5088-5090
-
-
Woese, C.R.1
Fox, G.E.2
-
30
-
-
84891787231
-
Ribosomal database project: Data and tools for high throughput rRNA analysis
-
Cole JR, Wang Q, Fish JA, Chai B, McGarrell DM, Sun Y, et al. Ribosomal database project: data and tools for high throughput rRNA analysis. Nucleic Acids Res. 2014;42(Database issue):D633-42.
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.DATABASE ISSUE
, pp. D633-D642
-
-
Cole, J.R.1
Wang, Q.2
Fish, J.A.3
Chai, B.4
McGarrell, D.M.5
Sun, Y.6
-
31
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, et al. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol. 2006;72(7):5069-72.
-
(2006)
Appl Environ Microbiol
, vol.72
, Issue.7
, pp. 5069-5072
-
-
Desantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
-
32
-
-
84873739311
-
The SILVA ribosomal RNA gene database project: Improved data processing and web-based tools
-
Jan
-
Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res. 2013 Jan;41(Database issue):D590-6.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.DATABASE ISSUE
, pp. D590-D596
-
-
Quast, C.1
Pruesse, E.2
Yilmaz, P.3
Gerken, J.4
Schweer, T.5
Yarza, P.6
-
33
-
-
85016922856
-
White B. A perspective on 16S rRNA operational taxonomic unit clustering using sequence similarity
-
Nguyen N-P, Warnow T, Pop M. White B. A perspective on 16S rRNA operational taxonomic unit clustering using sequence similarity. NPJ Biofilms Microbiomes. 2016;2:16004.
-
(2016)
NPJ Biofilms Microbiomes
, vol.2
, pp. 16004
-
-
Nguyen, N.-P.1
Warnow, T.2
Pop, M.3
-
34
-
-
85018945195
-
UNOISE2: Improved error-correction for Illumina 16S and ITS amplicon sequencing
-
Edgar RC. UNOISE2: improved error-correction for Illumina 16S and ITS amplicon sequencing. bioRxiv. 2016:081257.
-
(2016)
BioRxiv.
, pp. 081257
-
-
Edgar, R.C.1
-
35
-
-
85020080492
-
Deblur rapidly resolves single-nucleotide community sequence patterns
-
Amir A, McDonald D, Navas-Molina JA, Kopylova E, Morton JT, Xu ZZ, et al. Deblur rapidly resolves single-nucleotide community sequence patterns. mSystems. 2017;2(2):e00191-16.
-
(2017)
MSystems.
, vol.2
, Issue.2
, pp. e00191-e00216
-
-
Amir, A.1
McDonald, D.2
Navas-Molina, J.A.3
Kopylova, E.4
Morton, J.T.5
Xu, Z.Z.6
-
36
-
-
84969871954
-
DADA2: High resolution sample inference from Illumina amplicon data
-
Callahan BJ, McMurdie PJ, Rosen MJ, Han AW, Johnson AJA, Holmes SP. DADA2: high resolution sample inference from Illumina amplicon data. Nat Methods. 2016;13(7):581-3.
-
(2016)
Nat Methods
, vol.13
, Issue.7
, pp. 581-583
-
-
Callahan, B.J.1
McMurdie, P.J.2
Rosen, M.J.3
Han, A.W.4
Johnson, A.J.A.5
Holmes, S.P.6
-
37
-
-
84891815701
-
Use of whole genome shotgun metagenomics: A practical guide for the microbiome-minded physician scientist
-
Jan
-
Ma J, Prince A, Aagaard KM. Use of whole genome shotgun metagenomics: a practical guide for the microbiome-minded physician scientist. Semin Reprod Med. 2014 Jan;32(01):005-13.
-
(2014)
Semin Reprod Med
, vol.32
, Issue.1
, pp. 005-013
-
-
Ma, J.1
Prince, A.2
Aagaard, K.M.3
-
38
-
-
84868094960
-
Incorporating 16S gene copy number information improves estimates of microbial diversity and abundance
-
e1002743 Oct 25
-
Kembel SW, Wu M, Eisen JA, Green JL. Incorporating 16S gene copy number information improves estimates of microbial diversity and abundance. PLoS Comput Biol. 2012 Oct 25;8(10):e1002743.
-
(2012)
PLoS Comput Biol
, vol.8
, Issue.10
-
-
Kembel, S.W.1
Wu, M.2
Eisen, J.A.3
Green, J.L.4
-
39
-
-
84870006986
-
Functional assignment of metagenomic data: Challenges and applications
-
Nov
-
Prakash T, Taylor TD. Functional assignment of metagenomic data: challenges and applications. Brief Bioinform. 2012 Nov;13(6):711-27.
-
(2012)
Brief Bioinform
, vol.13
, Issue.6
, pp. 711-727
-
-
Prakash, T.1
Taylor, T.D.2
-
40
-
-
85041122944
-
Human microbiome acquisition and Bioinformatic challenges in metagenomic studies
-
D'Argenio V. Human microbiome acquisition and Bioinformatic challenges in metagenomic studies. Int J Mol Sci. 2018;19(2).
-
(2018)
Int J Mol Sci.
, vol.19
, Issue.2
-
-
D'Argenio, V.1
-
41
-
-
84884127512
-
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
-
Sep
-
Langille MGI, Zaneveld J, Caporaso JG, McDonald D, Knights D, Reyes JA, et al. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nat Biotechnol. 2013 Sep;31(9):814-21.
-
(2013)
Nat Biotechnol
, vol.31
, Issue.9
, pp. 814-821
-
-
Langille, M.G.I.1
Zaneveld, J.2
Caporaso, J.G.3
McDonald, D.4
Knights, D.5
Reyes, J.A.6
-
42
-
-
84940731600
-
Tax4Fun: Predicting functional profiles from metagenomic 16S rRNA data
-
Sep 1
-
Aßhauer KP, Wemheuer B, Daniel R, Meinicke P. Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data. Bioinformatics. 2015 Sep 1;31(17):2882-4.
-
(2015)
Bioinformatics.
, vol.31
, Issue.17
, pp. 2882-2884
-
-
Aßhauer, K.P.1
Wemheuer, B.2
Daniel, R.3
Meinicke, P.4
-
43
-
-
84994638542
-
Piphillin: Improved prediction of metagenomic content by direct inference from human microbiomes
-
e0166104 Nov 7
-
Iwai S, Weinmaier T, Schmidt BL, Albertson DG, Poloso NJ, Dabbagh K, et al. Piphillin: improved prediction of metagenomic content by direct inference from human microbiomes. PLoS One. 2016 Nov 7;11(11):e0166104.
-
(2016)
PLoS One
, vol.11
, Issue.11
-
-
Iwai, S.1
Weinmaier, T.2
Schmidt, B.L.3
Albertson, D.G.4
Poloso, N.J.5
Dabbagh, K.6
-
44
-
-
85040119520
-
The commensal microbiome is associated with anti-PD-1 efficacy in metastatic melanoma patients
-
Jan 5
-
Matson V, Fessler J, Bao R, Chongsuwat T, Zha Y, Alegre M-L, et al. The commensal microbiome is associated with anti-PD-1 efficacy in metastatic melanoma patients. Science. 2018 Jan 5;359(6371):104-8.
-
(2018)
Science.
, vol.359
, Issue.6371
, pp. 104-108
-
-
Matson, V.1
Fessler, J.2
Bao, R.3
Chongsuwat, T.4
Zha, Y.5
Alegre, M.-L.6
-
45
-
-
84945289175
-
Use of germ-free animal models in microbiota-related research
-
Oct 28
-
Al-Asmakh M, Zadjali F. Use of germ-free animal models in microbiota-related research. J Microbiol Biotechnol. 2015 Oct 28;25(10):1583-8.
-
(2015)
J Microbiol Biotechnol
, vol.25
, Issue.10
, pp. 1583-1588
-
-
Al-Asmakh, M.1
Zadjali, F.2
-
46
-
-
84989157896
-
Growing up in a bubble: Using germ-free animals to assess the influence of the gut microbiota on brain and behavior
-
Luczynski P, McVey Neufeld K-A, Oriach CS, Clarke G, Dinan TG, Cryan JF. Growing up in a bubble: using germ-free animals to assess the influence of the gut microbiota on brain and behavior. Int J Neuropsychopharmacol. 2016;19(8).
-
(2016)
Int J Neuropsychopharmacol.
, vol.19
, Issue.8
-
-
Luczynski, P.1
McVey Neufeld, K.-A.2
Oriach, C.S.3
Clarke, G.4
Dinan, T.G.5
Cryan, J.F.6
-
47
-
-
0034994474
-
Microbial modulation of innate defense: Goblet cells and the intestinal mucus layer
-
Jun 1
-
Deplancke B, Gaskins HR. Microbial modulation of innate defense: goblet cells and the intestinal mucus layer. Am J Clin Nutr. 2001 Jun 1;73(6):1131S-41S.
-
(2001)
Am J Clin Nutr
, vol.73
, Issue.6
, pp. 1131S-1141S
-
-
Deplancke, B.1
Gaskins, H.R.2
-
48
-
-
34249284197
-
Use of axenic animals in studying the adaptation of mammals to their commensal intestinal microbiota
-
Smith K, McCoy KD, Macpherson AJ. Use of axenic animals in studying the adaptation of mammals to their commensal intestinal microbiota. Semin Immunol. 2007;19(2):59-69.
-
(2007)
Semin Immunol
, vol.19
, Issue.2
, pp. 59-69
-
-
Smith, K.1
McCoy, K.D.2
Macpherson, A.J.3
-
49
-
-
0024264506
-
High endothelial venule morphology and function are inducible in germ-free mice: A possible role for interferon-gamma
-
Nov
-
Manolios N, Geczy CL, Schrieber L. High endothelial venule morphology and function are inducible in germ-free mice: a possible role for interferon-gamma. Cell Immunol. 1988 Nov;117(1):136-51.
-
(1988)
Cell Immunol
, vol.117
, Issue.1
, pp. 136-151
-
-
Manolios, N.1
Geczy, C.L.2
Schrieber, L.3
-
50
-
-
0026329353
-
The preference for switching to IgA expression by Peyer's patch germinal center B cells is likely due to the intrinsic influence of their microenvironment
-
Weinstein PD, Cebra JJ. The preference for switching to IgA expression by Peyer's patch germinal center B cells is likely due to the intrinsic influence of their microenvironment. J Immunol. 1991;147(12):4126-35.
-
(1991)
J Immunol
, vol.147
, Issue.12
, pp. 4126-4135
-
-
Weinstein, P.D.1
Cebra, J.J.2
-
51
-
-
84898685253
-
Segmented filamentous bacterium uses secondary and tertiary lymphoid tissues to induce gut IgA and specific T helper 17 cell responses
-
Apr 17
-
Lécuyer E, Rakotobe S, Lengliné-Garnier H, Lebreton C, Picard M, Juste C, et al. Segmented filamentous bacterium uses secondary and tertiary lymphoid tissues to induce gut IgA and specific T helper 17 cell responses. Immunity. 2014 Apr 17;40(4):608-20.
-
(2014)
Immunity.
, vol.40
, Issue.4
, pp. 608-620
-
-
Lécuyer, E.1
Rakotobe, S.2
Lengliné-Garnier, H.3
Lebreton, C.4
Picard, M.5
Juste, C.6
-
52
-
-
33750818632
-
Adaptation of solitary intestinal lymphoid tissue in response to microbiota and chemokine receptor CCR7 signaling
-
Nov 15
-
Pabst O, Herbrand H, Friedrichsen M, Velaga S, Dorsch M, Berhardt G, et al. Adaptation of solitary intestinal lymphoid tissue in response to microbiota and chemokine receptor CCR7 signaling. J Immunol. 2006 Nov 15;177(10):6824-32.
-
(2006)
J Immunol
, vol.177
, Issue.10
, pp. 6824-6832
-
-
Pabst, O.1
Herbrand, H.2
Friedrichsen, M.3
Velaga, S.4
Dorsch, M.5
Berhardt, G.6
-
53
-
-
56749146467
-
Lymphoid tissue genesis induced by commensals through NOD1 regulates intestinal homeostasis
-
Nov
-
Bouskra D, Brézillon C, Bérard M, Werts C, Varona R, Boneca IG, et al. Lymphoid tissue genesis induced by commensals through NOD1 regulates intestinal homeostasis. Nature. 2008 Nov;456(7221):507-10.
-
(2008)
Nature.
, vol.456
, Issue.7221
, pp. 507-510
-
-
Bouskra, D.1
Brézillon, C.2
Bérard, M.3
Werts, C.4
Varona, R.5
Boneca, I.G.6
-
54
-
-
19944427114
-
Cryptopatches and isolated lymphoid follicles: Dynamic lymphoid tissues dispensable for the generation of intraepithelial lymphocytes
-
Pabst O, Herbrand H, Worbs T, Friedrichsen M, Yan S, Hoffmann MW, et al. Cryptopatches and isolated lymphoid follicles: dynamic lymphoid tissues dispensable for the generation of intraepithelial lymphocytes. Eur J Immunol. 2005;35(1):98-107.
-
(2005)
Eur J Immunol
, vol.35
, Issue.1
, pp. 98-107
-
-
Pabst, O.1
Herbrand, H.2
Worbs, T.3
Friedrichsen, M.4
Yan, S.5
Hoffmann, M.W.6
-
55
-
-
0036971220
-
The functions of mucosal T cells in containing the indigenous commensal flora of the intestine
-
Dec
-
Macpherson AJ, Martinic MM, Harris N. The functions of mucosal T cells in containing the indigenous commensal flora of the intestine. Cell Mol Life Sci. 2002 Dec;59(12):2088-96.
-
(2002)
Cell Mol Life Sci
, vol.59
, Issue.12
, pp. 2088-2096
-
-
Macpherson, A.J.1
Martinic, M.M.2
Harris, N.3
-
56
-
-
0034802944
-
IgA responses in the intestinal mucosa against pathogenic and non-pathogenic microorganisms
-
Oct
-
Macpherson AJ, Hunziker L, McCoy K, Lamarre A. IgA responses in the intestinal mucosa against pathogenic and non-pathogenic microorganisms. Microbes Infect. 2001 Oct;3(12):1021-35.
-
(2001)
Microbes Infect
, vol.3
, Issue.12
, pp. 1021-1035
-
-
Macpherson, A.J.1
Hunziker, L.2
McCoy, K.3
Lamarre, A.4
-
57
-
-
53349173070
-
Specific microbiota direct the differentiation of Th17 cells in the mucosa of the small intestine
-
Ivanov II, de Llanos Frutos R, Manel N, Yoshinaga K, Rifkin DB, Sartor RB, et al. Specific microbiota direct the differentiation of Th17 cells in the mucosa of the small intestine. Cell Host Microbe. 2008;4(4):337-49.
-
(2008)
Cell Host Microbe
, vol.4
, Issue.4
, pp. 337-349
-
-
Ivanov, I.I.1
De Llanos Frutos, R.2
Manel, N.3
Yoshinaga, K.4
Rifkin, D.B.5
Sartor, R.B.6
-
58
-
-
84994128766
-
Microbiota - Myeloid cell crosstalk beyond the gut
-
Gorjifard S, Goldszmid RS. Microbiota - myeloid cell crosstalk beyond the gut. J Leukoc Biol. 2016;100(5):865-79.
-
(2016)
J Leukoc Biol
, vol.100
, Issue.5
, pp. 865-879
-
-
Gorjifard, S.1
Goldszmid, R.S.2
-
59
-
-
84893704050
-
Gut microbiota metabolism of dietary fiber influences allergic airway disease and hematopoiesis
-
Feb
-
Trompette A, Gollwitzer ES, Yadava K, Sichelstiel AK, Sprenger N, Ngom-Bru C, et al. Gut microbiota metabolism of dietary fiber influences allergic airway disease and hematopoiesis. Nat Med. 2014 Feb;20(2):159-66.
-
(2014)
Nat Med
, vol.20
, Issue.2
, pp. 159-166
-
-
Trompette, A.1
Gollwitzer, E.S.2
Yadava, K.3
Sichelstiel, A.K.4
Sprenger, N.5
Ngom-Bru, C.6
-
60
-
-
2942578705
-
The response of the lymphatic tissue to the microbial flora. Studies on germfree mice
-
Bauer H, Horowitz RE, Levenson SM, Popper H. The response of the lymphatic tissue to the microbial flora. Studies on germfree mice. Am J Pathol. 1963;42:471-83.
-
(1963)
Am J Pathol
, vol.42
, pp. 471-483
-
-
Bauer, H.1
Horowitz, R.E.2
Levenson, S.M.3
Popper, H.4
-
61
-
-
0015177024
-
Immunoglobulins in intact, immunized, and contaminated axenic mice: Study of serum IgA
-
Benveniste J, Lespinats G, Adam C, Salomon JC. Immunoglobulins in intact, immunized, and contaminated axenic mice: study of serum IgA. J Immunol. 1971;107(6):1647-55.
-
(1971)
J Immunol
, vol.107
, Issue.6
, pp. 1647-1655
-
-
Benveniste, J.1
Lespinats, G.2
Adam, C.3
Salomon, J.C.4
-
62
-
-
22144490199
-
An immunomodulatory molecule of symbiotic Bacteria directs maturation of the host immune system
-
Jul 15
-
Mazmanian SK, Liu CH, Tzianabos AO, Kasper DL. An immunomodulatory molecule of symbiotic Bacteria directs maturation of the host immune system. Cell. 2005 Jul 15;122(1):107-18.
-
(2005)
Cell.
, vol.122
, Issue.1
, pp. 107-118
-
-
Mazmanian, S.K.1
Liu, C.H.2
Tzianabos, A.O.3
Kasper, D.L.4
-
63
-
-
70350343544
-
Induction of intestinal Th17 cells by segmented filamentous bacteria
-
Oct 30
-
Ivanov II, Atarashi K, Manel N, Brodie EL, Shima T, Karaoz U, et al. Induction of intestinal Th17 cells by segmented filamentous bacteria. Cell. 2009 Oct 30;139(3):485-98.
-
(2009)
Cell.
, vol.139
, Issue.3
, pp. 485-498
-
-
Ivanov, I.I.1
Atarashi, K.2
Manel, N.3
Brodie, E.L.4
Shima, T.5
Karaoz, U.6
-
64
-
-
84943639694
-
Th17 cell induction by adhesion of microbes to intestinal epithelial cells
-
Oct 8
-
Atarashi K, Tanoue T, Ando M, Kamada N, Nagano Y, Narushima S, et al. Th17 cell induction by adhesion of microbes to intestinal epithelial cells. Cell. 2015 Oct 8;163(2):367-80.
-
(2015)
Cell.
, vol.163
, Issue.2
, pp. 367-380
-
-
Atarashi, K.1
Tanoue, T.2
Ando, M.3
Kamada, N.4
Nagano, Y.5
Narushima, S.6
-
65
-
-
85003426944
-
Identifying species of symbiont bacteria from the human gut that, alone, can induce intestinal Th17 cells in mice
-
Dec 13
-
Tan TG, Sefik E, Geva-Zatorsky N, Kua L, Naskar D, Teng F, et al. Identifying species of symbiont bacteria from the human gut that, alone, can induce intestinal Th17 cells in mice. Proc Natl Acad Sci U S A. 2016 Dec 13;113(50):E8141-50.
-
(2016)
Proc Natl Acad Sci U S A
, vol.113
, Issue.50
, pp. E8141-E8150
-
-
Tan, T.G.1
Sefik, E.2
Geva-Zatorsky, N.3
Kua, L.4
Naskar, D.5
Teng, F.6
-
66
-
-
85012863046
-
Mining the human gut microbiota for immunomodulatory organisms
-
Feb 23
-
Geva-Zatorsky N, Sefik E, Kua L, Pasman L, Tan TG, Ortiz-Lopez A, et al. Mining the human gut microbiota for immunomodulatory organisms. Cell. 2017 Feb 23;168(5):928-943.e11.
-
(2017)
Cell.
, vol.168
, Issue.5
, pp. 928-928e11
-
-
Geva-Zatorsky, N.1
Sefik, E.2
Kua, L.3
Pasman, L.4
Tan, T.G.5
Ortiz-Lopez, A.6
-
67
-
-
77954738601
-
Inducible Foxp3+ regulatory T-cell development by a commensal bacterium of the intestinal microbiota
-
Jul 6
-
Round JL, Mazmanian SK. Inducible Foxp3+ regulatory T-cell development by a commensal bacterium of the intestinal microbiota. Proc Natl Acad Sci U S A. 2010 Jul 6;107(27):12204-9.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, Issue.27
, pp. 12204-12209
-
-
Round, J.L.1
Mazmanian, S.K.2
-
68
-
-
85027947787
-
Induction of colonic regulatory T cells by indigenous Clostridium species
-
Jan 21
-
Atarashi K, Tanoue T, Shima T, Imaoka A, Kuwahara T, Momose Y, et al. Induction of colonic regulatory T cells by indigenous Clostridium species. Science. 2011 Jan 21;331(6015):337-41.
-
(2011)
Science.
, vol.331
, Issue.6015
, pp. 337-341
-
-
Atarashi, K.1
Tanoue, T.2
Shima, T.3
Imaoka, A.4
Kuwahara, T.5
Momose, Y.6
-
70
-
-
84920404296
-
How informative is the mouse for human gut microbiota research?
-
Jan
-
Nguyen TLA, Vieira-Silva S, Liston A, Raes J. How informative is the mouse for human gut microbiota research? Dis Model Mech. 2015 Jan;8(1):1-16.
-
(2015)
Dis Model Mech
, vol.8
, Issue.1
, pp. 1-16
-
-
Nguyen, T.L.A.1
Vieira-Silva, S.2
Liston, A.3
Raes, J.4
-
71
-
-
85033501802
-
Mouse models for human intestinal microbiota research: A critical evaluation
-
Hugenholtz F, de Vos WM. Mouse models for human intestinal microbiota research: a critical evaluation. Cell Mol Life Sci. 2018;75(1):149-60.
-
(2018)
Cell Mol Life Sci
, vol.75
, Issue.1
, pp. 149-160
-
-
Hugenholtz, F.1
De Vos, W.M.2
-
72
-
-
84943607837
-
A catalog of the mouse gut metagenome
-
Oct
-
Xiao L, Feng Q, Liang S, Sonne SB, Xia Z, Qiu X, et al. A catalog of the mouse gut metagenome. Nat Biotechnol. 2015 Oct;33(10):1103-8.
-
(2015)
Nat Biotechnol
, vol.33
, Issue.10
, pp. 1103-1108
-
-
Xiao, L.1
Feng, Q.2
Liang, S.3
Sonne, S.B.4
Xia, Z.5
Qiu, X.6
-
73
-
-
0035692543
-
The forestomach of rats and mice, an effective device supporting digestive metabolism in muridae (review)
-
Jan 1
-
Gärtner K. The forestomach of rats and mice, an effective device supporting digestive metabolism in muridae (review). J Exp Anim Sci. 2002 Jan 1;42(1):1-20.
-
(2002)
J Exp Anim Sci
, vol.42
, Issue.1
, pp. 1-20
-
-
Gärtner, K.1
-
75
-
-
84887820630
-
Multiple independent appearances of the cecal appendix in mammalian evolution and an investigation of related ecological and anatomical factors
-
Aug 1
-
Smith HF, Parker W, Kotzé SH, Laurin M. Multiple independent appearances of the cecal appendix in mammalian evolution and an investigation of related ecological and anatomical factors. Comptes Rendus Palevol. 2013 Aug 1;12(6):339-54.
-
(2013)
Comptes Rendus Palevol
, vol.12
, Issue.6
, pp. 339-354
-
-
Smith, H.F.1
Parker, W.2
Kotzé, S.H.3
Laurin, M.4
-
76
-
-
84994031764
-
Sex differences in colonization of gut microbiota from a man with short-term vegetarian and inulin-supplemented diet in germ-free mice
-
36137 Oct 31
-
Wang J, Wang J, Pang X, Zhao L, Tian L, Wang X. Sex differences in colonization of gut microbiota from a man with short-term vegetarian and inulin-supplemented diet in germ-free mice. Sci Rep. 2016 Oct 31;6:36137.
-
(2016)
Sci Rep
, vol.6
-
-
Wang, J.1
Wang, J.2
Pang, X.3
Zhao, L.4
Tian, L.5
Wang, X.6
-
77
-
-
85011840676
-
Microbiota composition of simultaneously colonized mice housed under either a gnotobiotic isolator or individually ventilated cage regime
-
42245 Feb 7
-
Lundberg R, Bahl MI, Licht TR, Toft MF, Hansen AK. Microbiota composition of simultaneously colonized mice housed under either a gnotobiotic isolator or individually ventilated cage regime. Sci Rep. 2017 Feb 7;7:42245.
-
(2017)
Sci Rep
, vol.7
-
-
Lundberg, R.1
Bahl, M.I.2
Licht, T.R.3
Toft, M.F.4
Hansen, A.K.5
-
78
-
-
84928881439
-
Standardised animal models of host microbial mutualism
-
Macpherson AJ, McCoy KD. Standardised animal models of host microbial mutualism. Mucosal Immunol. 2015;8(3):476-86.
-
(2015)
Mucosal Immunol
, vol.8
, Issue.3
, pp. 476-486
-
-
Macpherson, A.J.1
McCoy, K.D.2
-
79
-
-
84981341034
-
The mouse intestinal bacterial collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota
-
16131 Oct
-
Lagkouvardos I, Pukall R, Abt B, Foesel BU, Meier-Kolthoff JP, Kumar N, et al. The mouse intestinal bacterial collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota. Nat Microbiol. 2016 Oct;1(10):16131.
-
(2016)
Nat Microbiol
, vol.1
, Issue.10
-
-
Lagkouvardos, I.1
Pukall, R.2
Abt, B.3
Foesel, B.U.4
Meier-Kolthoff, J.P.5
Kumar, N.6
-
80
-
-
84995739780
-
A dietary Fiber-deprived gut microbiota degrades the colonic mucus barrier and enhances pathogen susceptibility
-
Nov 17
-
Desai MS, Seekatz AM, Koropatkin NM, Kamada N, Hickey CA, Wolter M, et al. A dietary Fiber-deprived gut microbiota degrades the colonic mucus barrier and enhances pathogen susceptibility. Cell. 2016 Nov 17;167(5):1339-1353.e21.
-
(2016)
Cell.
, vol.167
, Issue.5
, pp. 1339-1339e21
-
-
Desai, M.S.1
Seekatz, A.M.2
Koropatkin, N.M.3
Kamada, N.4
Hickey, C.A.5
Wolter, M.6
-
81
-
-
85028691578
-
Stable engraftment of human microbiota into mice with a single oral gavage following antibiotic conditioning
-
Staley C, Kaiser T, Beura LK, Hamilton MJ, Weingarden AR, Bobr A, et al. Stable engraftment of human microbiota into mice with a single oral gavage following antibiotic conditioning. Microbiome. 2017;5(1):87.
-
(2017)
Microbiome
, vol.5
, Issue.1
, pp. 87
-
-
Staley, C.1
Kaiser, T.2
Beura, L.K.3
Hamilton, M.J.4
Weingarden, A.R.5
Bobr, A.6
-
82
-
-
84900541836
-
Broad scope method for creating humanized animal models for animal health and disease research through antibiotic treatment and human fecal transfer
-
Mar 1
-
Hintze KJ, Cox JE, Rompato G, Benninghoff AD, Ward RE, Broadbent J, et al. Broad scope method for creating humanized animal models for animal health and disease research through antibiotic treatment and human fecal transfer. Gut Microbes. 2014 Mar 1;5(2):183-91.
-
(2014)
Gut Microbes
, vol.5
, Issue.2
, pp. 183-191
-
-
Hintze, K.J.1
Cox, J.E.2
Rompato, G.3
Benninghoff, A.D.4
Ward, R.E.5
Broadbent, J.6
-
83
-
-
85008400979
-
Diet matters: Endotoxin in the diet impacts the level of allergic sensitization in germ-free mice
-
e0167786 Jan 4
-
Schwarzer M, Srutkova D, Hermanova P, Leulier F, Kozakova H, Schabussova I. Diet matters: endotoxin in the diet impacts the level of allergic sensitization in germ-free mice. PLoS One. 2017 Jan 4;12(1):e0167786.
-
(2017)
PLoS One
, vol.12
, Issue.1
-
-
Schwarzer, M.1
Srutkova, D.2
Hermanova, P.3
Leulier, F.4
Kozakova, H.5
Schabussova, I.6
-
84
-
-
57249114612
-
Gut microbiota and lipopolysaccharide content of the diet influence development of regulatory T cells: Studies in germ-free mice
-
Nov 6
-
Hrncir T, Stepankova R, Kozakova H, Hudcovic T, Tlaskalova-Hogenova H. Gut microbiota and lipopolysaccharide content of the diet influence development of regulatory T cells: studies in germ-free mice. BMC Immunol. 2008 Nov 6;9(1):65.
-
(2008)
BMC Immunol
, vol.9
, Issue.1
, pp. 65
-
-
Hrncir, T.1
Stepankova, R.2
Kozakova, H.3
Hudcovic, T.4
Tlaskalova-Hogenova, H.5
-
85
-
-
84888049920
-
Commensal bacteria control cancer response to therapy by modulating the tumor microenvironment
-
Nov 22
-
Iida N, Dzutsev A, Stewart CA, Smith L, Bouladoux N, Weingarten RA, et al. Commensal bacteria control cancer response to therapy by modulating the tumor microenvironment. Science. 2013 Nov 22;342(6161):967-70.
-
(2013)
Science.
, vol.342
, Issue.6161
, pp. 967-970
-
-
Iida, N.1
Dzutsev, A.2
Stewart, C.A.3
Smith, L.4
Bouladoux, N.5
Weingarten, R.A.6
-
86
-
-
84888059687
-
The intestinal microbiota modulates the anticancer immune effects of cyclophosphamide
-
Nov 22
-
Viaud S, Saccheri F, Mignot G, Yamazaki T, Daillère R, Hannani D, et al. The intestinal microbiota modulates the anticancer immune effects of cyclophosphamide. Science. 2013 Nov 22;342(6161):971-6.
-
(2013)
Science.
, vol.342
, Issue.6161
, pp. 971-976
-
-
Viaud, S.1
Saccheri, F.2
Mignot, G.3
Yamazaki, T.4
Daillère, R.5
Hannani, D.6
-
87
-
-
84937701770
-
Intestinal Blautia is associated with reduced death from graft-versus-host disease
-
Aug 1
-
Jenq RR, Taur Y, Devlin SM, Ponce DM, Goldberg JD, Ahr KF, et al. Intestinal Blautia is associated with reduced death from graft-versus-host disease. Biol Blood and Marrow Transplant. 2015 Aug 1;21(8):1373-83.
-
(2015)
Biol Blood and Marrow Transplant
, vol.21
, Issue.8
, pp. 1373-1383
-
-
Jenq, R.R.1
Taur, Y.2
Devlin, S.M.3
Ponce, D.M.4
Goldberg, J.D.5
Ahr, K.F.6
-
88
-
-
85021854564
-
Intestinal microbiota and relapse after hematopoietic-cell transplantation
-
May 20
-
Peled JU, Devlin SM, Staffas A, Lumish M, Khanin R, Littmann ER, et al. Intestinal microbiota and relapse after hematopoietic-cell transplantation. J Clin Oncol. 2017 May 20;35(15):1650-9.
-
(2017)
J Clin Oncol
, vol.35
, Issue.15
, pp. 1650-1659
-
-
Peled, J.U.1
Devlin, S.M.2
Staffas, A.3
Lumish, M.4
Khanin, R.5
Littmann, E.R.6
-
89
-
-
85033576428
-
Gut microbiome influences efficacy of PD-1-based immunotherapy against epithelial tumors
-
Routy B, Chatelier EL, Derosa L, Duong CPM, Alou MT, Daillère R, et al. Gut microbiome influences efficacy of PD-1-based immunotherapy against epithelial tumors. Science. 2018;359(6371):91-7.
-
(2018)
Science.
, vol.359
, Issue.6371
, pp. 91-97
-
-
Routy, B.1
Chatelier, E.L.2
Derosa, L.3
Duong, C.P.M.4
Alou, M.T.5
Daillère, R.6
-
90
-
-
85040147273
-
Gut microbiome modulates response to anti-PD-1 immunotherapy in melanoma patients
-
eaan4236
-
Gopalakrishnan V, Spencer CN, Nezi L, Reuben A, Andrews MC, Karpinets TV, et al. Gut microbiome modulates response to anti-PD-1 immunotherapy in melanoma patients. Science. 2017:eaan4236.
-
(2017)
Science
-
-
Gopalakrishnan, V.1
Spencer, C.N.2
Nezi, L.3
Reuben, A.4
Andrews, M.C.5
Karpinets, T.V.6
-
91
-
-
85031736103
-
Metagenomic shotgun sequencing and unbiased Metabolomic profiling identify specific human gut microbiota and metabolites associated with immune checkpoint therapy efficacy in melanoma patients
-
Sep 15
-
Frankel AE, Coughlin LA, Kim J, Froehlich TW, Xie Y, Frenkel EP, et al. Metagenomic shotgun sequencing and unbiased Metabolomic profiling identify specific human gut microbiota and metabolites associated with immune checkpoint therapy efficacy in melanoma patients. Neoplasia. 2017 Sep 15;19(10):848-55.
-
(2017)
Neoplasia.
, vol.19
, Issue.10
, pp. 848-855
-
-
Frankel, A.E.1
Coughlin, L.A.2
Kim, J.3
Froehlich, T.W.4
Xie, Y.5
Frenkel, E.P.6
-
92
-
-
85021170776
-
Baseline gut microbiota predicts clinical response and colitis in metastatic melanoma patients treated with ipilimumab
-
Jun 1
-
Chaput N, Lepage P, Coutzac C, Soularue E, Le Roux K, Monot C, et al. Baseline gut microbiota predicts clinical response and colitis in metastatic melanoma patients treated with ipilimumab. Ann Oncol. 2017 Jun 1;28(6):1368-79.
-
(2017)
Ann Oncol
, vol.28
, Issue.6
, pp. 1368-1379
-
-
Chaput, N.1
Lepage, P.2
Coutzac, C.3
Soularue, E.4
Le Roux, K.5
Monot, C.6
-
93
-
-
84957565779
-
Intestinal microbiome analyses identify melanoma patients at risk for checkpoint-blockade-induced colitis
-
10391 Feb 2
-
Dubin K, Callahan MK, Ren B, Khanin R, Viale A, Ling L, et al. Intestinal microbiome analyses identify melanoma patients at risk for checkpoint-blockade-induced colitis. Nat Commun. 2016 Feb 2;7:10391.
-
(2016)
Nat Commun
, vol.7
-
-
Dubin, K.1
Callahan, M.K.2
Ren, B.3
Khanin, R.4
Viale, A.5
Ling, L.6
-
94
-
-
85029481879
-
Potential role of intratumor bacteria in mediating tumor resistance to the chemotherapeutic drug gemcitabine
-
Sep 15
-
Geller LT, Barzily-Rokni M, Danino T, Jonas OH, Shental N, Nejman D, et al. Potential role of intratumor bacteria in mediating tumor resistance to the chemotherapeutic drug gemcitabine. Science. 2017 Sep 15;357(6356):1156-60.
-
(2017)
Science.
, vol.357
, Issue.6356
, pp. 1156-1160
-
-
Geller, L.T.1
Barzily-Rokni, M.2
Danino, T.3
Jonas, O.H.4
Shental, N.5
Nejman, D.6
-
95
-
-
85034815842
-
Identification of unique neoantigen qualities in long-term survivors of pancreatic cancer
-
Nov
-
Balachandran VP, Łuksza M, Zhao JN, Makarov V, Moral JA, Remark R, et al. Identification of unique neoantigen qualities in long-term survivors of pancreatic cancer. Nature. 2017 Nov;551(7681):512.
-
(2017)
Nature.
, vol.551
, Issue.7681
, pp. 512
-
-
Balachandran, V.P.1
Łuksza, M.2
Zhao, J.N.3
Makarov, V.4
Moral, J.A.5
Remark, R.6
-
96
-
-
85043240875
-
Hyperglycemia drives intestinal barrier dysfunction and risk for enteric infection
-
Mar 23
-
Thaiss CA, Levy M, Grosheva I, Zheng D, Soffer E, Blacher E, et al. Hyperglycemia drives intestinal barrier dysfunction and risk for enteric infection. Science. 2018 Mar 23;359(6382):1376-83.
-
(2018)
Science.
, vol.359
, Issue.6382
, pp. 1376-1383
-
-
Thaiss, C.A.1
Levy, M.2
Grosheva, I.3
Zheng, D.4
Soffer, E.5
Blacher, E.6
-
98
-
-
53349164200
-
Commensal DNA limits regulatory T cell conversion and is a natural adjuvant of intestinal immune responses
-
Oct 17
-
Hall JA, Bouladoux N, Sun CM, Wohlfert EA, Blank RB, Zhu Q, et al. Commensal DNA limits regulatory T cell conversion and is a natural adjuvant of intestinal immune responses. Immunity. 2008 Oct 17;29(4):637-49.
-
(2008)
Immunity.
, vol.29
, Issue.4
, pp. 637-649
-
-
Hall, J.A.1
Bouladoux, N.2
Sun, C.M.3
Wohlfert, E.A.4
Blank, R.B.5
Zhu, Q.6
-
99
-
-
84971201113
-
Gut microbiota, metabolites and host immunity
-
Jun
-
Rooks MG, Garrett WS. Gut microbiota, metabolites and host immunity. Nat Rev Immunol. 2016 Jun;16(6):341-52.
-
(2016)
Nat Rev Immunol
, vol.16
, Issue.6
, pp. 341-352
-
-
Rooks, M.G.1
Garrett, W.S.2
-
100
-
-
84961200851
-
Formation of short chain fatty acids by the gut microbiota and their impact on human metabolism
-
Morrison DJ, Preston T. Formation of short chain fatty acids by the gut microbiota and their impact on human metabolism. Gut Microbes. 2016;7(3):189-200.
-
(2016)
Gut Microbes
, vol.7
, Issue.3
, pp. 189-200
-
-
Morrison, D.J.1
Preston, T.2
-
101
-
-
84883139076
-
The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism
-
den BG, van EK, Groen AK, Venema K, Reijngoud D-J, Bakker BM. The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism. J Lipid Res. 2013;54(9):2325-40.
-
(2013)
J Lipid Res
, vol.54
, Issue.9
, pp. 2325-2340
-
-
Den, B.G.1
Van, E.K.2
Groen, A.K.3
Venema, K.4
Reijngoud, D.-J.5
Bakker, B.M.6
-
102
-
-
84937975894
-
Lactate and short chain fatty acids produced by microbial fermentation downregulate proinflammatory responses in intestinal epithelial cells and myeloid cells
-
Oct
-
Iraporda C, Errea A, Romanin DE, Cayet D, Pereyra E, Pignataro O, et al. Lactate and short chain fatty acids produced by microbial fermentation downregulate proinflammatory responses in intestinal epithelial cells and myeloid cells. Immunobiology. 2015 Oct;220(10):1161-9.
-
(2015)
Immunobiology.
, vol.220
, Issue.10
, pp. 1161-1169
-
-
Iraporda, C.1
Errea, A.2
Romanin, D.E.3
Cayet, D.4
Pereyra, E.5
Pignataro, O.6
-
103
-
-
84937139909
-
Slc5a8, a Na+-coupled high-affinity transporter for short-chain fatty acids, is a conditional tumor suppressor in colon that protects against colitis and colon cancer under low-fiber dietary conditions
-
Gurav A, Sivaprakasam S, Bhutia YD, Boettger T, Singh N, Ganapathy V. Slc5a8, a Na+-coupled high-affinity transporter for short-chain fatty acids, is a conditional tumor suppressor in colon that protects against colitis and colon cancer under low-fiber dietary conditions. Biochem J. 2015;469(2):267-78.
-
(2015)
Biochem J
, vol.469
, Issue.2
, pp. 267-278
-
-
Gurav, A.1
Sivaprakasam, S.2
Bhutia, Y.D.3
Boettger, T.4
Singh, N.5
Ganapathy, V.6
-
104
-
-
84916910420
-
HDAC inhibitors upregulate B cell microRNAs that silence AID and Blimp-1 expression for epigenetic modulation of antibody and autoantibody responses
-
White CA, Pone EJ, Lam T, Tat C, Hayama KL, Li G, et al. HDAC inhibitors upregulate B cell microRNAs that silence AID and Blimp-1 expression for epigenetic modulation of antibody and autoantibody responses. J Immunol. 2014;193(12):5933-50.
-
(2014)
J Immunol
, vol.193
, Issue.12
, pp. 5933-5950
-
-
White, C.A.1
Pone, E.J.2
Lam, T.3
Tat, C.4
Hayama, K.L.5
Li, G.6
-
105
-
-
84890550163
-
Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation
-
Dec 19
-
Arpaia N, Campbell C, Fan X, Dikiy S, van der Veeken J, deRoos P, et al. Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation. Nature. 2013 Dec 19;504(7480):451-5.
-
(2013)
Nature.
, vol.504
, Issue.7480
, pp. 451-455
-
-
Arpaia, N.1
Campbell, C.2
Fan, X.3
Dikiy, S.4
Van Der Veeken, J.5
Deroos, P.6
-
106
-
-
85029128985
-
Commensal bacteria make GPCR ligands that mimic human signalling molecules
-
Sep
-
Cohen LJ, Esterhazy D, Kim S-H, Lemetre C, Aguilar RR, Gordon EA, et al. Commensal bacteria make GPCR ligands that mimic human signalling molecules. Nature. 2017 Sep;549(7670):48-53.
-
(2017)
Nature.
, vol.549
, Issue.7670
, pp. 48-53
-
-
Cohen, L.J.1
Esterhazy, D.2
Kim, S.-H.3
Lemetre, C.4
Aguilar, R.R.5
Gordon, E.A.6
-
107
-
-
84979965005
-
Metabolites: Messengers between the microbiota and the immune system
-
Jul 15
-
Levy M, Thaiss CA, Elinav E. Metabolites: messengers between the microbiota and the immune system. Genes Dev. 2016 Jul 15;30(14):1589-97.
-
(2016)
Genes Dev
, vol.30
, Issue.14
, pp. 1589-1597
-
-
Levy, M.1
Thaiss, C.A.2
Elinav, E.3
-
108
-
-
84943638660
-
An IL-23R/IL-22 circuit regulates epithelial serum amyloid a to promote local effector Th17 responses
-
Oct 8
-
Sano T, Huang W, Hall JA, Yang Y, Chen A, Gavzy SJ, et al. An IL-23R/IL-22 circuit regulates epithelial serum amyloid a to promote local effector Th17 responses. Cell. 2015 Oct 8;163(2):381-93.
-
(2015)
Cell.
, vol.163
, Issue.2
, pp. 381-393
-
-
Sano, T.1
Huang, W.2
Hall, J.A.3
Yang, Y.4
Chen, A.5
Gavzy, S.J.6
-
109
-
-
85048753121
-
Gut microbiota modulates adoptive cell therapy via CD8α dendritic cells and IL-12
-
Feb 22
-
Uribe-Herranz M, Bittinger K, Rafail S, Guedan S, Pierini S, Tanes C, et al. Gut microbiota modulates adoptive cell therapy via CD8α dendritic cells and IL-12. JCI Insight. 2018 Feb 22;3(4).
-
(2018)
JCI Insight.
, vol.3
, Issue.4
-
-
Uribe-Herranz, M.1
Bittinger, K.2
Rafail, S.3
Guedan, S.4
Pierini, S.5
Tanes, C.6
-
110
-
-
85060753155
-
A defined commensal consortium elicits CD8 T cells and anti-cancer immunity
-
Tanoue T, Morita S, Plichta DR, Skelly AN, Suda W, Sugiura Y, et al. A defined commensal consortium elicits CD8 T cells and anti-cancer immunity. Nature. 2019:1.
-
(2019)
Nature.
, vol.1
-
-
Tanoue, T.1
Morita, S.2
Plichta, D.R.3
Skelly, A.N.4
Suda, W.5
Sugiura, Y.6
-
111
-
-
84899854070
-
Endoscopic photoconversion reveals unexpectedly broad leukocyte trafficking to and from the gut
-
May 6
-
Morton AM, Sefik E, Upadhyay R, Weissleder R, Benoist C, Mathis D. Endoscopic photoconversion reveals unexpectedly broad leukocyte trafficking to and from the gut. PNAS. 2014 May 6;111(18):6696-701.
-
(2014)
PNAS.
, vol.111
, Issue.18
, pp. 6696-6701
-
-
Morton, A.M.1
Sefik, E.2
Upadhyay, R.3
Weissleder, R.4
Benoist, C.5
Mathis, D.6
-
112
-
-
85030460514
-
Overall survival with combined Nivolumab and Ipilimumab in advanced melanoma
-
Oct 5
-
Wolchok JD, Chiarion-Sileni V, Gonzalez R, Rutkowski P, Grob J-J, Cowey CL, et al. Overall survival with combined Nivolumab and Ipilimumab in advanced melanoma. N Engl J Med. 2017 Oct 5;377(14):1345-56.
-
(2017)
N Engl J Med
, vol.377
, Issue.14
, pp. 1345-1356
-
-
Wolchok, J.D.1
Chiarion-Sileni, V.2
Gonzalez, R.3
Rutkowski, P.4
Grob, J.-J.5
Cowey, C.L.6
-
113
-
-
67650948293
-
Salmonella induces Flagellin- and MyD88-dependent migration of Bacteria-capturing dendritic cells into the gut lumen
-
Aug 1
-
Arques JL, Hautefort I, Ivory K, Bertelli E, Regoli M, Clare S, et al. Salmonella induces Flagellin- and MyD88-dependent migration of Bacteria-capturing dendritic cells into the gut lumen. Gastroenterology. 2009 Aug 1;137(2):579-587.e2.
-
(2009)
Gastroenterology.
, vol.137
, Issue.2
, pp. 579-579e2
-
-
Arques, J.L.1
Hautefort, I.2
Ivory, K.3
Bertelli, E.4
Regoli, M.5
Clare, S.6
-
115
-
-
84921786777
-
Regional specialization within the intestinal immune system
-
Oct
-
Mowat AM, Agace WW. Regional specialization within the intestinal immune system. Nat Rev Immunol. 2014 Oct;14(10):667-85.
-
(2014)
Nat Rev Immunol
, vol.14
, Issue.10
, pp. 667-685
-
-
Mowat, A.M.1
Agace, W.W.2
-
116
-
-
84877968633
-
Association of CTLA-4 polymorphisms with improved overall survival in melanoma patients treated with CTLA-4 blockade: A pilot study
-
Jun 1
-
Queirolo P, Morabito A, Laurent S, Lastraioli S, Piccioli P, Ascierto PA, et al. Association of CTLA-4 polymorphisms with improved overall survival in melanoma patients treated with CTLA-4 blockade: a pilot study. Cancer Investig. 2013 Jun 1;31(5):336-45.
-
(2013)
Cancer Investig
, vol.31
, Issue.5
, pp. 336-345
-
-
Queirolo, P.1
Morabito, A.2
Laurent, S.3
Lastraioli, S.4
Piccioli, P.5
Ascierto, P.A.6
-
117
-
-
84936953099
-
Melanoma-intrinsic β-catenin signalling prevents anti-tumour immunity
-
Jul
-
Spranger S, Bao R, Gajewski TF. Melanoma-intrinsic β-catenin signalling prevents anti-tumour immunity. Nature. 2015 Jul;523(7559):231-5.
-
(2015)
Nature.
, vol.523
, Issue.7559
, pp. 231-235
-
-
Spranger, S.1
Bao, R.2
Gajewski, T.F.3
-
118
-
-
84957093642
-
Loss of PTEN promotes resistance to T cell-mediated immunotherapy
-
Feb
-
Peng W, Chen JQ, Liu C, Malu S, Creasy C, Tetzlaff MT, et al. Loss of PTEN promotes resistance to T cell-mediated immunotherapy. Cancer Discov. 2016 Feb;6(2):202-16.
-
(2016)
Cancer Discov
, vol.6
, Issue.2
, pp. 202-216
-
-
Peng, W.1
Chen, J.Q.2
Liu, C.3
Malu, S.4
Creasy, C.5
Tetzlaff, M.T.6
-
119
-
-
85050806220
-
Negative association of antibiotics on clinical activity of immune checkpoint inhibitors in patients with advanced renal cell and non-small-cell lung cancer
-
Jun 1
-
Derosa L, Hellmann MD, Spaziano M, Halpenny D, Fidelle M, Rizvi H, et al. Negative association of antibiotics on clinical activity of immune checkpoint inhibitors in patients with advanced renal cell and non-small-cell lung cancer. Ann Oncol. 2018 Jun 1;29(6):1437-44.
-
(2018)
Ann Oncol
, vol.29
, Issue.6
, pp. 1437-1444
-
-
Derosa, L.1
Hellmann, M.D.2
Spaziano, M.3
Halpenny, D.4
Fidelle, M.5
Rizvi, H.6
-
120
-
-
85021694544
-
Can Consideration of the Microbiome Improve Antimicrobial Utilization and Treatment Outcomes in the Oncology Patient?
-
Galloway-Peña JR, Jenq RR, Shelburne SA. Can Consideration of the Microbiome Improve Antimicrobial Utilization and Treatment Outcomes in the Oncology Patient? Clin Cancer Res. 2017;23(13):3263-8.
-
(2017)
Clin Cancer Res
, vol.23
, Issue.13
, pp. 3263-3268
-
-
Galloway-Peña, J.R.1
Jenq, R.R.2
Shelburne, S.A.3
-
121
-
-
84868254408
-
Fecal microbiota transplantation in relapsing Clostridium difficile infection
-
Nov
-
Rohlke F, Stollman N. Fecal microbiota transplantation in relapsing Clostridium difficile infection. Ther Adv Gastroenterol. 2012 Nov;5(6):403-20.
-
(2012)
Ther Adv Gastroenterol
, vol.5
, Issue.6
, pp. 403-420
-
-
Rohlke, F.1
Stollman, N.2
-
122
-
-
84892828465
-
Diet rapidly and reproducibly alters the human gut microbiome
-
Jan
-
David LA, Maurice CF, Carmody RN, Gootenberg DB, Button JE, Wolfe BE, et al. Diet rapidly and reproducibly alters the human gut microbiome. Nature. 2014 Jan;505(7484):559-63.
-
(2014)
Nature.
, vol.505
, Issue.7484
, pp. 559-563
-
-
David, L.A.1
Maurice, C.F.2
Carmody, R.N.3
Gootenberg, D.B.4
Button, J.E.5
Wolfe, B.E.6
-
123
-
-
85018499853
-
Engineered regulatory systems modulate gene expression of human commensals in the gut
-
Apr 20
-
Lim B, Zimmermann M, Barry NA, Goodman AL. Engineered regulatory systems modulate gene expression of human commensals in the gut. Cell. 2017 Apr 20;169(3):547-558.e15.
-
(2017)
Cell.
, vol.169
, Issue.3
, pp. 547-547e15
-
-
Lim, B.1
Zimmermann, M.2
Barry, N.A.3
Goodman, A.L.4
-
124
-
-
85047558885
-
An exclusive metabolic niche enables strain engraftment in the gut microbiota
-
Shepherd ES, DeLoache WC, Pruss KM, Whitaker WR, Sonnenburg JL. An exclusive metabolic niche enables strain engraftment in the gut microbiota. Nature. 2018;557(7705):434-8.
-
(2018)
Nature.
, vol.557
, Issue.7705
, pp. 434-438
-
-
Shepherd, E.S.1
Deloache, W.C.2
Pruss, K.M.3
Whitaker, W.R.4
Sonnenburg, J.L.5
-
125
-
-
85009799781
-
Discovery of reactive microbiota-derived metabolites that inhibit host proteases
-
Guo C-J, Chang F-Y, Wyche TP, Backus KM, Acker TM, Funabashi M, et al. Discovery of reactive microbiota-derived metabolites that inhibit host proteases. Cell. 2017;168(3):517-526.e18.
-
(2017)
Cell
, vol.168
, Issue.3
, pp. 517-517e18
-
-
Guo, C.-J.1
Chang, F.-Y.2
Wyche, T.P.3
Backus, K.M.4
Acker, T.M.5
Funabashi, M.6
-
126
-
-
85042654568
-
Oncologists tap the microbiome in bid to improve immunotherapy outcomes
-
Feb 16
-
Mullard A. Oncologists tap the microbiome in bid to improve immunotherapy outcomes. Nat Rev Drug Discov. 2018 Feb 16;17:153-5.
-
(2018)
Nat Rev Drug Discov
, vol.17
, pp. 153-155
-
-
Mullard, A.1
-
127
-
-
84969983677
-
Immunological consequences of intestinal fungal Dysbiosis
-
Jun 8
-
Wheeler ML, Limon JJ, Bar AS, Leal CA, Gargus M, Tang J, et al. Immunological consequences of intestinal fungal Dysbiosis. Cell Host Microbe. 2016 Jun 8;19(6):865-73.
-
(2016)
Cell Host Microbe
, vol.19
, Issue.6
, pp. 865-873
-
-
Wheeler, M.L.1
Limon, J.J.2
Bar, A.S.3
Leal, C.A.4
Gargus, M.5
Tang, J.6
-
128
-
-
85057938403
-
Response to fungal Dysbiosis by gut-resident CX3CR1+ mononuclear phagocytes aggravates allergic airway disease
-
Dec 12
-
Li X, Leonardi I, Semon A, Doron I, Gao IH, Putzel GG, et al. Response to fungal Dysbiosis by gut-resident CX3CR1+ mononuclear phagocytes aggravates allergic airway disease. Cell Host Microbe. 2018 Dec 12;24(6):847-856.e4.
-
(2018)
Cell Host Microbe
, vol.24
, Issue.6
, pp. 847-847e4
-
-
Li, X.1
Leonardi, I.2
Semon, A.3
Doron, I.4
Gao, I.H.5
Putzel, G.G.6
-
129
-
-
85006158667
-
The multibiome: The intestinal Ecosystem's influence on immune homeostasis, health, and disease
-
Nov 1
-
Filyk HA, Osborne LC. The multibiome: the intestinal Ecosystem's influence on immune homeostasis, health, and disease. EBioMedicine. 2016 Nov 1;13:46-54.
-
(2016)
EBioMedicine.
, vol.13
, pp. 46-54
-
-
Filyk, H.A.1
Osborne, L.C.2
-
130
-
-
84961777823
-
Altered Virome and bacterial microbiome in human immunodeficiency virus-associated acquired immunodeficiency syndrome
-
Mar 9
-
Monaco CL, Gootenberg DB, Zhao G, Handley SA, Ghebremichael MS, Lim ES, et al. Altered Virome and bacterial microbiome in human immunodeficiency virus-associated acquired immunodeficiency syndrome. Cell Host Microbe. 2016 Mar 9;19(3):311-22.
-
(2016)
Cell Host Microbe
, vol.19
, Issue.3
, pp. 311-322
-
-
Monaco, C.L.1
Gootenberg, D.B.2
Zhao, G.3
Handley, S.A.4
Ghebremichael, M.S.5
Lim, E.S.6
-
131
-
-
84922245262
-
Disease-specific alterations in the enteric Virome in inflammatory bowel disease
-
Jan 29
-
Norman JM, Handley SA, Baldridge MT, Droit L, Liu CY, Keller BC, et al. Disease-specific alterations in the enteric Virome in inflammatory bowel disease. Cell. 2015 Jan 29;160(3):447-60.
-
(2015)
Cell.
, vol.160
, Issue.3
, pp. 447-460
-
-
Norman, J.M.1
Handley, S.A.2
Baldridge, M.T.3
Droit, L.4
Liu, C.Y.5
Keller, B.C.6
-
132
-
-
84903131526
-
Is type 1 diabetes "going viral"?
-
Jul 1
-
Richardson SJ, Horwitz MS. Is type 1 diabetes "going viral"? Diabetes. 2014 Jul 1;63(7):2203-5.
-
(2014)
Diabetes.
, vol.63
, Issue.7
, pp. 2203-2205
-
-
Richardson, S.J.1
Horwitz, M.S.2
-
133
-
-
85025599680
-
Intestinal virome changes precede autoimmunity in type i diabetes-susceptible children
-
Jul 25
-
Zhao G, Vatanen T, Droit L, Park A, Kostic AD, Poon TW, et al. Intestinal virome changes precede autoimmunity in type I diabetes-susceptible children. Proc Natl Acad Sci U S A. 2017 Jul 25;114(30):E6166-75.
-
(2017)
Proc Natl Acad Sci U S A
, vol.114
, Issue.30
, pp. E6166-E6175
-
-
Zhao, G.1
Vatanen, T.2
Droit, L.3
Park, A.4
Kostic, A.D.5
Poon, T.W.6
|