-
1
-
-
84862276328
-
Structure, function and diversity of the healthy human microbiome
-
Consortium HMP (2012) Structure, function and diversity of the healthy human microbiome. Nature 486(7402):207–214
-
(2012)
Nature
, vol.486
, Issue.7402
, pp. 207-214
-
-
Consortium, H.M.P.1
-
2
-
-
84905730165
-
An integrated catalog of reference genes in the human gut microbiome
-
COI: 1:CAS:528:DC%2BC2cXhtFSlsLjP, PID: 24997786
-
Li J, Jia H, Cai X, Zhong H, Feng Q, Sunagawa S et al (2014) An integrated catalog of reference genes in the human gut microbiome. Nat Biotechnol 32(8):834–841
-
(2014)
Nat Biotechnol
, vol.32
, Issue.8
, pp. 834-841
-
-
Li, J.1
Jia, H.2
Cai, X.3
Zhong, H.4
Feng, Q.5
Sunagawa, S.6
-
3
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
COI: 1:CAS:528:DC%2BC3cXislahsLc%3D, PID: 20203603
-
Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, Manichanh C et al (2010) A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464(7285):59–65. doi:10.1038/nature08821
-
(2010)
Nature
, vol.464
, Issue.7285
, pp. 59-65
-
-
Qin, J.1
Li, R.2
Raes, J.3
Arumugam, M.4
Burgdorf, K.S.5
Manichanh, C.6
-
4
-
-
0017294933
-
Degradation of blood group antigens in human colon ecosystems I. In vitro production of ABO blood group-degrading enzymes by enteric bacteria
-
COI: 1:STN:280:DyaE28%2FpsFGjug%3D%3D
-
Hoskins LC, Boulding ET (1976) Degradation of blood group antigens in human colon ecosystems I. In vitro production of ABO blood group-degrading enzymes by enteric bacteria. J Clinical Investig 57:63–73
-
(1976)
J Clinical Investig
, vol.57
, pp. 63-73
-
-
Hoskins, L.C.1
Boulding, E.T.2
-
5
-
-
84868210453
-
Association between the ABO blood group and the human intestinal microbiota composition
-
PID: 22672382
-
Makivuokko H, Lahtinen S, Wacklin P, Tuovinen E, Tenkanen H, Nikkila J et al (2012) Association between the ABO blood group and the human intestinal microbiota composition. BMC Microbiol 12(1):94
-
(2012)
BMC Microbiol
, vol.12
, Issue.1
, pp. 94
-
-
Makivuokko, H.1
Lahtinen, S.2
Wacklin, P.3
Tuovinen, E.4
Tenkanen, H.5
Nikkila, J.6
-
6
-
-
47349114231
-
Probiotic modulation of symbiotic gut microbial-host metabolic interactions in a humanized microbiome mouse model
-
Martin F-PJ, Wang Y, Sprenger N, Yap IKS, Lundstedt T, Lek P et al. (2008) Probiotic modulation of symbiotic gut microbial-host metabolic interactions in a humanized microbiome mouse model. Mol Syst Biol 4. http://www.nature.com/msb/journal/v4/n1/suppinfo/msb4100190_S1.html
-
(2008)
Mol Syst Biol
, vol.4
-
-
Martin, F.-P.J.1
Wang, Y.2
Sprenger, N.3
Yap, I.K.S.4
Lundstedt, T.5
Lek, P.6
-
7
-
-
34547830317
-
Colonization and impact of disease and other factors on intestinal microbiota
-
PID: 17420934
-
Thompson-Chagoyán O, Maldonado J, Gil A (2007) Colonization and impact of disease and other factors on intestinal microbiota. Dig Dis Sci 52(9):2069–2077. doi:10.1007/s10620-006-9285-z
-
(2007)
Dig Dis Sci
, vol.52
, Issue.9
, pp. 2069-2077
-
-
Thompson-Chagoyán, O.1
Maldonado, J.2
Gil, A.3
-
8
-
-
84867161176
-
Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts
-
COI: 1:CAS:528:DC%2BC38XhsVKhsrvE, PID: 22665442
-
Lozupone C, Faust K, Raes J, Faith JJ, Frank DN, Zaneveld J et al (2012) Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts. Genome Res 22(10):1974–1984. doi:10.1101/gr.138198.112
-
(2012)
Genome Res
, vol.22
, Issue.10
, pp. 1974-1984
-
-
Lozupone, C.1
Faust, K.2
Raes, J.3
Faith, J.J.4
Frank, D.N.5
Zaneveld, J.6
-
9
-
-
84864722033
-
Gut microbiota composition correlates with diet and health in the elderly
-
COI: 1:CAS:528:DC%2BC38XhtFKiur%2FP, PID: 22797518
-
Claesson MJ, Jeffery IB, Conde S, Power SE, O’Connor EM, Cusack S et al (2012) Gut microbiota composition correlates with diet and health in the elderly. Nature 488(7410):178–184. doi:10.1038/nature11319
-
(2012)
Nature
, vol.488
, Issue.7410
, pp. 178-184
-
-
Claesson, M.J.1
Jeffery, I.B.2
Conde, S.3
Power, S.E.4
O’Connor, E.M.5
Cusack, S.6
-
10
-
-
67349250428
-
The gut microbiota shapes intestinal immune responses during health and disease
-
COI: 1:CAS:528:DC%2BD1MXjvF2gtbk%3D, PID: 19343057
-
Round JL, Mazmanian SK (2009) The gut microbiota shapes intestinal immune responses during health and disease. Nat Rev Immunol 9(5):313–323
-
(2009)
Nat Rev Immunol
, vol.9
, Issue.5
, pp. 313-323
-
-
Round, J.L.1
Mazmanian, S.K.2
-
11
-
-
46249085739
-
Evolution of mammals and their gut microbes
-
COI: 1:CAS:528:DC%2BD1cXnt1Oju7o%3D, PID: 18497261
-
Ley RE, Hamady M, Lozupone C, Turnbaugh PJ, Ramey RR, Bircher JS et al (2008) Evolution of mammals and their gut microbes. Science 320(5883):1647–1651. doi:10.1126/science.1155725
-
(2008)
Science
, vol.320
, Issue.5883
, pp. 1647-1651
-
-
Ley, R.E.1
Hamady, M.2
Lozupone, C.3
Turnbaugh, P.J.4
Ramey, R.R.5
Bircher, J.S.6
-
12
-
-
52049092682
-
Worlds within worlds: evolution of the vertebrate gut microbiota
-
COI: 1:CAS:528:DC%2BD1cXhtFWitLrN, PID: 18794915
-
Ley RE, Lozupone CA, Hamady M, Knight R, Gordon JI (2008) Worlds within worlds: evolution of the vertebrate gut microbiota. Nat Rev Microbiol 6(10):776–788. doi:10.1038/nrmicro1978
-
(2008)
Nat Rev Microbiol
, vol.6
, Issue.10
, pp. 776-788
-
-
Ley, R.E.1
Lozupone, C.A.2
Hamady, M.3
Knight, R.4
Gordon, J.I.5
-
13
-
-
84886708920
-
Functional intestinal metagenomics
-
Bruin FJ, (ed), Wiley-Blackwell, New York
-
Van den Bogert B, Leimena MM, De Vos WM, Zoetendal EG, Kleerebezem M (2011) Functional intestinal metagenomics. In: De Bruin FJ (ed) Handbook of molecular microbial ecology, vol II: metagenomics in different habitats. Wiley-Blackwell, New York
-
(2011)
Handbook of molecular microbial ecology, vol II: metagenomics in different habitats
-
-
Van den Bogert, B.1
Leimena, M.M.2
De Vos, W.M.3
Zoetendal, E.G.4
Kleerebezem, M.5
-
14
-
-
33744804299
-
Metagenomic analysis of the human distal gut microbiome
-
COI: 1:CAS:528:DC%2BD28XltVOht7c%3D, PID: 16741115
-
Gill SR, Pop M, Deboy RT, Eckburg PB, Turnbaugh PJ, Samuel BS et al (2006) Metagenomic analysis of the human distal gut microbiome. Science 312(5778):1355–1359. doi:10.1126/science.1124234
-
(2006)
Science
, vol.312
, Issue.5778
, pp. 1355-1359
-
-
Gill, S.R.1
Pop, M.2
Deboy, R.T.3
Eckburg, P.B.4
Turnbaugh, P.J.5
Samuel, B.S.6
-
15
-
-
84862590343
-
The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates
-
COI: 1:CAS:528:DC%2BC38XovFylsL8%3D, PID: 22258098
-
Zoetendal EG, Raes J, van den Bogert B, Arumugam M, Booijink CC, Troost FJ et al (2012) The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates. ISME J 6(7):1415–1426. doi:10.1038/ismej.2011.212
-
(2012)
ISME J
, vol.6
, Issue.7
, pp. 1415-1426
-
-
Zoetendal, E.G.1
Raes, J.2
van den Bogert, B.3
Arumugam, M.4
Booijink, C.C.5
Troost, F.J.6
-
16
-
-
84899726499
-
Use of rodents as models of human diseases
-
PID: 24459397
-
Vandamme TF (2014) Use of rodents as models of human diseases. J Pharm Bioallied Sci 6(1):2
-
(2014)
J Pharm Bioallied Sci
, vol.6
, Issue.1
, pp. 2
-
-
Vandamme, T.F.1
-
17
-
-
54349126970
-
High-throughput diversity and functionality analysis of the gastrointestinal tract microbiota
-
COI: 1:CAS:528:DC%2BD1cXhtl2gtr%2FI, PID: 18941009
-
Zoetendal EG, Rajilic-Stojanovic M, de Vos WM (2008) High-throughput diversity and functionality analysis of the gastrointestinal tract microbiota. Gut 57(11):1605–1615. doi:10.1136/gut.2007.133603
-
(2008)
Gut
, vol.57
, Issue.11
, pp. 1605-1615
-
-
Zoetendal, E.G.1
Rajilic-Stojanovic, M.2
de Vos, W.M.3
-
18
-
-
77956094318
-
Creating and characterizing communities of human gut microbes in gnotobiotic mice
-
PID: 20664551
-
Faith JJ, Rey FE, O’Donnell D, Karlsson M, McNulty NP, Kallstrom G et al (2010) Creating and characterizing communities of human gut microbes in gnotobiotic mice. ISME J 4(9):1094
-
(2010)
ISME J
, vol.4
, Issue.9
, pp. 1094
-
-
Faith, J.J.1
Rey, F.E.2
O’Donnell, D.3
Karlsson, M.4
McNulty, N.P.5
Kallstrom, G.6
-
19
-
-
79952112013
-
Abbie Lathrop, the “mouse woman of Granby”: rodent fancier and accidental genetics pioneer
-
PID: 21061734
-
Steensma DP, Kyle RA, Shampo MA (2010) Abbie Lathrop, the “mouse woman of Granby”: rodent fancier and accidental genetics pioneer. Mayo Clin Proc 85(11):e83
-
(2010)
Mayo Clin Proc
, vol.85
, Issue.11
-
-
Steensma, D.P.1
Kyle, R.A.2
Shampo, M.A.3
-
20
-
-
0037028155
-
The mosaic structure of variation in the laboratory mouse genome
-
COI: 1:CAS:528:DC%2BD38Xpt1WhsL4%3D, PID: 12466852
-
Wade CM, Kulbokas EJ 3rd, Kirby AW, Zody MC, Mullikin JC, Lander ES et al (2002) The mosaic structure of variation in the laboratory mouse genome. Nature 420(6915):574–578. doi:10.1038/nature01252
-
(2002)
Nature
, vol.420
, Issue.6915
, pp. 574-578
-
-
Wade, C.M.1
Kulbokas, E.J.2
Kirby, A.W.3
Zody, M.C.4
Mullikin, J.C.5
Lander, E.S.6
-
22
-
-
0033989159
-
Genealogies of mouse inbred strains
-
COI: 1:CAS:528:DC%2BD3cXks1emsg%3D%3D, PID: 10615122
-
Beck JA, Lloyd S, Hafezparast M, Lennon-Pierce M, Eppig JT, Festing MF, Fisher EM (2000) Genealogies of mouse inbred strains. Nat Genet 24(1):23–25
-
(2000)
Nat Genet
, vol.24
, Issue.1
, pp. 23-25
-
-
Beck, J.A.1
Lloyd, S.2
Hafezparast, M.3
Lennon-Pierce, M.4
Eppig, J.T.5
Festing, M.F.6
Fisher, E.M.7
-
23
-
-
0002758516
-
The NOD mouse: a model for analyzing the interplay between heredity and environment in development of autoimmune disease
-
Leiter EH (1993) The NOD mouse: a model for analyzing the interplay between heredity and environment in development of autoimmune disease. ILAR J 35(1):4–14
-
(1993)
ILAR J
, vol.35
, Issue.1
, pp. 4-14
-
-
Leiter, E.H.1
-
24
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Mouse Genome Sequencing C, Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF et al (2002) Initial sequencing and comparative analysis of the mouse genome. Nature 420(6915):520–562. doi:10.1038/nature01262
-
(2002)
Nature
, vol.420
, Issue.6915
, pp. 520-562
-
-
Mouse Genome Sequencing, C.1
Waterston, R.H.2
Lindblad-Toh, K.3
Birney, E.4
Rogers, J.5
Abril, J.F.6
-
25
-
-
66249148986
-
Lineage-specific biology revealed by a finished genome assembly of the mouse
-
PID: 19468303
-
Church DM, Goodstadt L, Hillier LW, Zody MC, Goldstein S, She X et al (2009) Lineage-specific biology revealed by a finished genome assembly of the mouse. PLoS Biol 7(5):e1000112. doi:10.1371/journal.pbio.1000112
-
(2009)
PLoS Biol
, vol.7
, Issue.5
-
-
Church, D.M.1
Goodstadt, L.2
Hillier, L.W.3
Zody, M.C.4
Goldstein, S.5
She, X.6
-
26
-
-
84911494217
-
Principles of regulatory information conservation between mouse and human
-
COI: 1:CAS:528:DC%2BC2cXhvFGlt7rO, PID: 25409826
-
Cheng Y, Ma Z, Kim B-H, Wu W, Cayting P, Boyle AP et al (2014) Principles of regulatory information conservation between mouse and human. Nature 515(7527):371–375
-
(2014)
Nature
, vol.515
, Issue.7527
, pp. 371-375
-
-
Cheng, Y.1
Ma, Z.2
Kim, B.-H.3
Wu, W.4
Cayting, P.5
Boyle, A.P.6
-
27
-
-
84911470871
-
Conservation of trans-acting circuitry during mammalian regulatory evolution
-
COI: 1:CAS:528:DC%2BC2cXhvFGlt73K, PID: 25409825
-
Stergachis AB, Neph S, Sandstrom R, Haugen E, Reynolds AP, Zhang M et al (2014) Conservation of trans-acting circuitry during mammalian regulatory evolution. Nature 515(7527):365–370
-
(2014)
Nature
, vol.515
, Issue.7527
, pp. 365-370
-
-
Stergachis, A.B.1
Neph, S.2
Sandstrom, R.3
Haugen, E.4
Reynolds, A.P.5
Zhang, M.6
-
28
-
-
84911462077
-
A comparative encyclopedia of DNA elements in the mouse genome
-
COI: 1:CAS:528:DC%2BC2cXhvFGlt7rI, PID: 25409824
-
Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T et al (2014) A comparative encyclopedia of DNA elements in the mouse genome. Nature 515(7527):355–364
-
(2014)
Nature
, vol.515
, Issue.7527
, pp. 355-364
-
-
Yue, F.1
Cheng, Y.2
Breschi, A.3
Vierstra, J.4
Wu, W.5
Ryba, T.6
-
29
-
-
84874457770
-
Genomic responses in mouse models poorly mimic human inflammatory diseases
-
COI: 1:CAS:528:DC%2BC3sXkvVKqsro%3D, PID: 23401516
-
Seok J, Warren HS, Cuenca AG, Mindrinos MN, Baker HV, Xu W et al (2013) Genomic responses in mouse models poorly mimic human inflammatory diseases. Proc Natl Acad Sci USA 110(9):3507–3512
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.9
, pp. 3507-3512
-
-
Seok, J.1
Warren, H.S.2
Cuenca, A.G.3
Mindrinos, M.N.4
Baker, H.V.5
Xu, W.6
-
30
-
-
0024531380
-
Comparative morphology of the stomach of some laboratory mammals
-
COI: 1:STN:280:DyaL1M3mtVWqug%3D%3D, PID: 2724910
-
Ghoshal NG, Bal HS (1989) Comparative morphology of the stomach of some laboratory mammals. Lab Anim 23(1):21–29
-
(1989)
Lab Anim
, vol.23
, Issue.1
, pp. 21-29
-
-
Ghoshal, N.G.1
Bal, H.S.2
-
31
-
-
0028132904
-
Deconjugation of bile acids by lactobacilli in the mouse small bowel
-
COI: 1:CAS:528:DyaK2cXlslCqs7s%3D, PID: 7944373
-
Tannock GW, Tangerman A, Van Schaik A, McConnell MA (1994) Deconjugation of bile acids by lactobacilli in the mouse small bowel. Appl Environ Microbiol 60(9):3419–3420
-
(1994)
Appl Environ Microbiol
, vol.60
, Issue.9
, pp. 3419-3420
-
-
Tannock, G.W.1
Tangerman, A.2
Van Schaik, A.3
McConnell, M.A.4
-
32
-
-
78449296237
-
Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors
-
COI: 1:CAS:528:DC%2BC3cXhsVCqsb3K, PID: 20937875
-
Benson AK, Kelly SA, Legge R, Ma F, Low SJ, Kim J et al (2010) Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors. Proc Natl Acad Sci USA 107(44):18933–18938. doi:10.1073/pnas.1007028107
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.44
, pp. 18933-18938
-
-
Benson, A.K.1
Kelly, S.A.2
Legge, R.3
Ma, F.4
Low, S.J.5
Kim, J.6
-
33
-
-
50049098340
-
Ecological role of lactobacilli in the gastrointestinal tract: implications for fundamental and biomedical research
-
COI: 1:CAS:528:DC%2BD1cXhtVehu7jF, PID: 18539818
-
Walter J (2008) Ecological role of lactobacilli in the gastrointestinal tract: implications for fundamental and biomedical research. Appl Environ Microbiol 74(16):4985–4996. doi:10.1128/AEM.00753-08
-
(2008)
Appl Environ Microbiol
, vol.74
, Issue.16
, pp. 4985-4996
-
-
Walter, J.1
-
34
-
-
79952266302
-
The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri
-
COI: 1:CAS:528:DC%2BC3MXisl2nt7s%3D, PID: 21379339
-
Frese SA, Benson AK, Tannock GW, Loach DM, Kim J, Zhang M et al (2011) The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri. PLoS Genet 7(2):e1001314
-
(2011)
PLoS Genet
, vol.7
, Issue.2
-
-
Frese, S.A.1
Benson, A.K.2
Tannock, G.W.3
Loach, D.M.4
Kim, J.5
Zhang, M.6
-
35
-
-
0036319829
-
Gastrointestinal transit times in mice and humans measured with 27Al and 19F nuclear magnetic resonance
-
Schwarz R, Kaspar A, Seelig J, Kunnecke B (2002) Gastrointestinal transit times in mice and humans measured with 27Al and 19F nuclear magnetic resonance. Magn Res Med 48(2):255–261. doi:10.1002/mrm.10207
-
(2002)
Magn Res Med
, vol.48
, Issue.2
, pp. 255-261
-
-
Schwarz, R.1
Kaspar, A.2
Seelig, J.3
Kunnecke, B.4
-
36
-
-
31444449652
-
Molecular analysis of the bacterial microbiota in the human stomach
-
COI: 1:CAS:528:DC%2BD28XhtVOhsrg%3D, PID: 16407106
-
Bik EM, Eckburg PB, Gill SR, Nelson KE, Purdom EA, Francois F et al (2006) Molecular analysis of the bacterial microbiota in the human stomach. Proc Natl Acad Sci USA 103(3):732–737. doi:10.1073/pnas.0506655103
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.3
, pp. 732-737
-
-
Bik, E.M.1
Eckburg, P.B.2
Gill, S.R.3
Nelson, K.E.4
Purdom, E.A.5
Francois, F.6
-
37
-
-
84879469786
-
Upper gastrointestinal tract
-
Treuting PM, Dintzis S, (eds), Academic Press, London
-
Treuting P, Valasek M, Dintzis S (2012) Upper gastrointestinal tract. In: Treuting PM, Dintzis S (eds) Comparative anatomy and histology, a mouse and human atlas. Academic Press, London
-
(2012)
Comparative anatomy and histology, a mouse and human atlas
-
-
Treuting, P.1
Valasek, M.2
Dintzis, S.3
-
38
-
-
84862662140
-
The early settlers: intestinal microbiology in early life
-
COI: 1:CAS:528:DC%2BC38Xms1Wgsbs%3D, PID: 22224552
-
Scholtens PA, Oozeer R, Martin R, Amor KB, Knol J (2012) The early settlers: intestinal microbiology in early life. Annu Rev Food Sci Technol 3:425–447
-
(2012)
Annu Rev Food Sci Technol
, vol.3
, pp. 425-447
-
-
Scholtens, P.A.1
Oozeer, R.2
Martin, R.3
Amor, K.B.4
Knol, J.5
-
39
-
-
84882544287
-
Lower gastrointestinal tract
-
Treuting P, Dintzis S, (eds), Academic Press, London
-
Treuting P, Dintzis S (2012) Lower gastrointestinal tract. In: Treuting P, Dintzis S (eds) Comparative anatomy and histology, a mouse and human atlas. Academic Press, London
-
(2012)
Comparative anatomy and histology, a mouse and human atlas
-
-
Treuting, P.1
Dintzis, S.2
-
40
-
-
0030032123
-
Digestion and physiological properties of resistant starch in the human large bowel
-
COI: 1:CAS:528:DyaK28XjsFejt7g%3D, PID: 8695600
-
Cummings JH, Beatty ER, Kingman SM, Bingham SA, Englyst HN (1996) Digestion and physiological properties of resistant starch in the human large bowel. Br J Nutr 75(05):733–747
-
(1996)
Br J Nutr
, vol.75
, Issue.5
, pp. 733-747
-
-
Cummings, J.H.1
Beatty, E.R.2
Kingman, S.M.3
Bingham, S.A.4
Englyst, H.N.5
-
41
-
-
79952748335
-
The two mucus layers of colon are organized by the MUC2 mucin, whereas the outer layer is a legislator of host–microbial interactions
-
COI: 1:CAS:528:DC%2BC3MXjvVCrsrk%3D, PID: 20615996
-
Johansson ME, Larsson JM, Hansson GC (2011) The two mucus layers of colon are organized by the MUC2 mucin, whereas the outer layer is a legislator of host–microbial interactions. Proc Natl Acad Sci USA 108(Suppl 1):4659–4665. doi:10.1073/pnas.1006451107
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 4659-4665
-
-
Johansson, M.E.1
Larsson, J.M.2
Hansson, G.C.3
-
42
-
-
84924703317
-
Mucus layers in inflammatory bowel disease
-
PID: 25025717
-
Johansson ME (2014) Mucus layers in inflammatory bowel disease. Inflamm Bowel Dis 20(11):2124–2131. doi:10.1097/MIB.0000000000000117
-
(2014)
Inflamm Bowel Dis
, vol.20
, Issue.11
, pp. 2124-2131
-
-
Johansson, M.E.1
-
43
-
-
84891736162
-
Bacteria penetrate the normally impenetrable inner colon mucus layer in both murine colitis models and patients with ulcerative colitis
-
COI: 1:CAS:528:DC%2BC2cXkslartrg%3D, PID: 23426893
-
Johansson ME, Gustafsson JK, Holmen-Larsson J, Jabbar KS, Xia L, Xu H et al (2014) Bacteria penetrate the normally impenetrable inner colon mucus layer in both murine colitis models and patients with ulcerative colitis. Gut 63(2):281–291. doi:10.1136/gutjnl-2012-303207
-
(2014)
Gut
, vol.63
, Issue.2
, pp. 281-291
-
-
Johansson, M.E.1
Gustafsson, J.K.2
Holmen-Larsson, J.3
Jabbar, K.S.4
Xia, L.5
Xu, H.6
-
44
-
-
84923386270
-
IL-22-STAT3 pathway plays a key role in the maintenance of ileal homeostasis in mice lacking secreted mucus barrier
-
PID: 25636123
-
Sovran B, Loonen LM, Lu P, Hugenholtz F, Belzer C, Stolte EH et al (2015) IL-22-STAT3 pathway plays a key role in the maintenance of ileal homeostasis in mice lacking secreted mucus barrier. Inflamm Bowel Dis 21(3):531–542. doi:10.1097/MIB.0000000000000319
-
(2015)
Inflamm Bowel Dis
, vol.21
, Issue.3
, pp. 531-542
-
-
Sovran, B.1
Loonen, L.M.2
Lu, P.3
Hugenholtz, F.4
Belzer, C.5
Stolte, E.H.6
-
45
-
-
78149283854
-
Mucolytic bacteria with increased prevalence in IBD mucosa augment in vitro utilization of mucin by other bacteria
-
COI: 1:CAS:528:DC%2BC3cXhtlOhsb7J, PID: 20648002
-
Png CW, Lindén SK, Gilshenan KS, Zoetendal EG, McSweeney CS, Sly LI et al (2010) Mucolytic bacteria with increased prevalence in IBD mucosa augment in vitro utilization of mucin by other bacteria. Am J Gastroenterol 105(11):2420–2428
-
(2010)
Am J Gastroenterol
, vol.105
, Issue.11
, pp. 2420-2428
-
-
Png, C.W.1
Lindén, S.K.2
Gilshenan, K.S.3
Zoetendal, E.G.4
McSweeney, C.S.5
Sly, L.I.6
-
46
-
-
84856703493
-
An ex vivo method for studying mucus formation, properties, and thickness in human colonic biopsies and mouse small and large intestinal explants
-
COI: 1:CAS:528:DC%2BC38XjsFKgtbk%3D, PID: 22159279
-
Gustafsson JK, Ermund A, Johansson ME, Schutte A, Hansson GC, Sjovall H (2012) An ex vivo method for studying mucus formation, properties, and thickness in human colonic biopsies and mouse small and large intestinal explants. Am J Physiol Gastrointest Liver Physiol 302(4):G430–G438. doi:10.1152/ajpgi.00405.2011
-
(2012)
Am J Physiol Gastrointest Liver Physiol
, vol.302
, Issue.4
, pp. G430-G438
-
-
Gustafsson, J.K.1
Ermund, A.2
Johansson, M.E.3
Schutte, A.4
Hansson, G.C.5
Sjovall, H.6
-
47
-
-
84863985588
-
Microbes inside—from diversity to function: the case of Akkermansia
-
COI: 1:CAS:528:DC%2BC38XhtVOjtL3P, PID: 22437156
-
Belzer C, De Vos WM (2012) Microbes inside—from diversity to function: the case of Akkermansia. ISME J 6(8):1449–1458
-
(2012)
ISME J
, vol.6
, Issue.8
, pp. 1449-1458
-
-
Belzer, C.1
De Vos, W.M.2
-
48
-
-
82155175676
-
Composition and functional role of the mucus layers in the intestine
-
COI: 1:CAS:528:DC%2BC3MXhtl2gsr7E, PID: 21947475
-
Johansson ME, Ambort D, Pelaseyed T, Schutte A, Gustafsson JK, Ermund A et al (2011) Composition and functional role of the mucus layers in the intestine. CMLS 68(22):3635–3641. doi:10.1007/s00018-011-0822-3
-
(2011)
CMLS
, vol.68
, Issue.22
, pp. 3635-3641
-
-
Johansson, M.E.1
Ambort, D.2
Pelaseyed, T.3
Schutte, A.4
Gustafsson, J.K.5
Ermund, A.6
-
49
-
-
84897398769
-
Altered mucus glycosylation in core 1 O-glycan-deficient mice affects microbiota composition and intestinal architecture
-
PID: 24416370
-
Sommer F, Adam N, Johansson ME, Xia L, Hansson GC, Backhed F (2014) Altered mucus glycosylation in core 1 O-glycan-deficient mice affects microbiota composition and intestinal architecture. PLoS One 9(1):e85254. doi:10.1371/journal.pone.0085254
-
(2014)
PLoS One
, vol.9
, Issue.1
-
-
Sommer, F.1
Adam, N.2
Johansson, M.E.3
Xia, L.4
Hansson, G.C.5
Backhed, F.6
-
50
-
-
66249136714
-
A complex, but uniform O-glycosylation of the human MUC2 mucin from colonic biopsies analyzed by nanoLC/MSn
-
PID: 19321523
-
Larsson JM, Karlsson H, Sjovall H, Hansson GC (2009) A complex, but uniform O-glycosylation of the human MUC2 mucin from colonic biopsies analyzed by nanoLC/MSn. Glycobiology 19(7):756–766. doi:10.1093/glycob/cwp048
-
(2009)
Glycobiology
, vol.19
, Issue.7
, pp. 756-766
-
-
Larsson, J.M.1
Karlsson, H.2
Sjovall, H.3
Hansson, G.C.4
-
51
-
-
0033983705
-
Analyzing the molecular foundations of commensalism in the mouse intestine
-
COI: 1:CAS:528:DC%2BD3cXhsF2rsLg%3D, PID: 10679416
-
Hooper LV, Falk PG, Gordon JI (2000) Analyzing the molecular foundations of commensalism in the mouse intestine. Curr Opin Microbiol 3(1):79–85
-
(2000)
Curr Opin Microbiol
, vol.3
, Issue.1
, pp. 79-85
-
-
Hooper, L.V.1
Falk, P.G.2
Gordon, J.I.3
-
52
-
-
0037270375
-
The role of indigenous microflora in the development of murine intestinal fucosyl- and sialyltransferases
-
COI: 1:CAS:528:DC%2BD3sXlvFKmtw%3D%3D, PID: 12475916
-
Nanthakumar NN, Dai D, Newburg DS, Walker WA (2003) The role of indigenous microflora in the development of murine intestinal fucosyl- and sialyltransferases. FASEB J 17(1):44–46. doi:10.1096/fj.02-0031fje
-
(2003)
FASEB J
, vol.17
, Issue.1
, pp. 44-46
-
-
Nanthakumar, N.N.1
Dai, D.2
Newburg, D.S.3
Walker, W.A.4
-
53
-
-
79956257405
-
Secretor genotype (FUT2 gene) is strongly associated with the composition of Bifidobacteria in the human intestine
-
COI: 1:CAS:528:DC%2BC3MXms1KhurY%3D, PID: 21625510
-
Wacklin P, Mäkivuokko H, Alakulppi N, Nikkilä J, Tenkanen H, Räbinä J et al (2011) Secretor genotype (FUT2 gene) is strongly associated with the composition of Bifidobacteria in the human intestine. PLoS One 6(5):e20113
-
(2011)
PLoS One
, vol.6
, Issue.5
-
-
Wacklin, P.1
Mäkivuokko, H.2
Alakulppi, N.3
Nikkilä, J.4
Tenkanen, H.5
Räbinä, J.6
-
54
-
-
84899648332
-
Faecal microbiota composition in adults is associated with the FUT2 gene determining the secretor status
-
PID: 24733310
-
Wacklin P, Tuimala J, Nikkilä J, Tims S, Mäkivuokko H, Alakulppi N et al (2014) Faecal microbiota composition in adults is associated with the FUT2 gene determining the secretor status. PLoS One 9(4):e94863
-
(2014)
PLoS One
, vol.9
, Issue.4
-
-
Wacklin, P.1
Tuimala, J.2
Nikkilä, J.3
Tims, S.4
Mäkivuokko, H.5
Alakulppi, N.6
-
55
-
-
85028593760
-
-
Phylogeny, physiology and comparative genomics
-
Ouwerkerk JP (2016) Akkermansia species. Phylogeny, physiology and comparative genomics
-
(2016)
Akkermansia species
-
-
Ouwerkerk, J.P.1
-
56
-
-
0025233771
-
Intraoperative tissue oximetry in the human gastrointestinal tract
-
COI: 1:STN:280:DyaK3c7msVyksA%3D%3D, PID: 2305939
-
Sheridan WG, Lowndes RH, Young HL (1990) Intraoperative tissue oximetry in the human gastrointestinal tract. Am J Surg 159(3):314–319
-
(1990)
Am J Surg
, vol.159
, Issue.3
, pp. 314-319
-
-
Sheridan, W.G.1
Lowndes, R.H.2
Young, H.L.3
-
57
-
-
37849031379
-
Measurements of rat and mouse gastrointestinal pH, fluid and lymphoid tissue, and implications for in vivo experiments
-
COI: 1:CAS:528:DC%2BD1cXhsV2ksbY%3D, PID: 18088506
-
McConnell EL, Basit AW, Murdan S (2008) Measurements of rat and mouse gastrointestinal pH, fluid and lymphoid tissue, and implications for in vivo experiments. J Pharm Pharmacol 60(1):63–70. doi:10.1211/jpp.60.1.0008
-
(2008)
J Pharm Pharmacol
, vol.60
, Issue.1
, pp. 63-70
-
-
McConnell, E.L.1
Basit, A.W.2
Murdan, S.3
-
58
-
-
34547507259
-
Microbial communities in the human small intestine: coupling diversity to metagenomics
-
COI: 1:CAS:528:DC%2BD2sXntlOisbo%3D, PID: 17661703
-
Booijink CC, Zoetendal EG, Kleerebezem M, de Vos WM (2007) Microbial communities in the human small intestine: coupling diversity to metagenomics. Future Microbiol 2(3):285–295. doi:10.2217/17460913.2.3.285
-
(2007)
Future Microbiol
, vol.2
, Issue.3
, pp. 285-295
-
-
Booijink, C.C.1
Zoetendal, E.G.2
Kleerebezem, M.3
de Vos, W.M.4
-
59
-
-
0016805102
-
Metabolic turnover rate: a physiological meaning of the metabolic rate per unit body weight
-
COI: 1:STN:280:DyaE28%2Fntlyhuw%3D%3D, PID: 1195755
-
Kleiber M (1975) Metabolic turnover rate: a physiological meaning of the metabolic rate per unit body weight. J Theor Biol 53(1):199–204
-
(1975)
J Theor Biol
, vol.53
, Issue.1
, pp. 199-204
-
-
Kleiber, M.1
-
60
-
-
85000363137
-
Microbiota diurnal rhythmicity programs host transcriptome oscillations
-
COI: 1:CAS:528:DC%2BC28XitVSms7bI, PID: 27912059
-
Thaiss CA, Levy M, Korem T, Dohnalová L, Shapiro H, Jaitin DA et al (2016) Microbiota diurnal rhythmicity programs host transcriptome oscillations. Cell 167(6):1495–1510, e1412
-
(2016)
Cell
, vol.167
, Issue.6
, pp. 1490-1495
-
-
Thaiss, C.A.1
Levy, M.2
Korem, T.3
Dohnalová, L.4
Shapiro, H.5
Jaitin, D.A.6
-
61
-
-
79960854386
-
Intestinal microbiota in healthy adults: temporal analysis reveals individual and common core and relation to intestinal symptoms
-
COI: 1:CAS:528:DC%2BC3MXhtVOrt73P, PID: 21829582
-
Jalanka-Tuovinen J, Salonen A, Nikkilä J, Immonen O, Kekkonen R, Lahti L et al (2011) Intestinal microbiota in healthy adults: temporal analysis reveals individual and common core and relation to intestinal symptoms. PLoS One 6(7):e23035
-
(2011)
PLoS One
, vol.6
, Issue.7
-
-
Jalanka-Tuovinen, J.1
Salonen, A.2
Nikkilä, J.3
Immonen, O.4
Kekkonen, R.5
Lahti, L.6
-
62
-
-
25944442348
-
Colonic separation mechanism in lagomorph and rodent species—a comparison
-
Bjornhag G, Snipes RL (1999) Colonic separation mechanism in lagomorph and rodent species—a comparison. Mitt Mus Natkd Zool Reihe 75:275–281
-
(1999)
Mitt Mus Natkd Zool Reihe
, vol.75
, pp. 275-281
-
-
Bjornhag, G.1
Snipes, R.L.2
-
63
-
-
0242657363
-
Digestive strategies of small hindgut fermenters
-
Sakaguchi E (2003) Digestive strategies of small hindgut fermenters. Anim Sci J 74:327–337
-
(2003)
Anim Sci J
, vol.74
, pp. 327-337
-
-
Sakaguchi, E.1
-
64
-
-
0002319447
-
Effect of preventing coprophagy on colonisation by segmented filamentous bacteria in the small bowel of mice
-
Klaasen HLBM, Koopman JP, Scholten PM, Van Den Brink ME, Theeuwes AGM (1990) Effect of preventing coprophagy on colonisation by segmented filamentous bacteria in the small bowel of mice. Microb Ecol Health Dis 3(2):99–103
-
(1990)
Microb Ecol Health Dis
, vol.3
, Issue.2
, pp. 99-103
-
-
Klaasen, H.L.B.M.1
Koopman, J.P.2
Scholten, P.M.3
Van Den Brink, M.E.4
Theeuwes, A.G.M.5
-
65
-
-
33845901507
-
Microbial ecology: human gut microbes associated with obesity
-
COI: 1:CAS:528:DC%2BD28XhtlemtLvM, PID: 17183309
-
Ley RE, Turnbaugh PJ, Klein S, Gordon JI (2006) Microbial ecology: human gut microbes associated with obesity. Nature 444(7122):1022–1023
-
(2006)
Nature
, vol.444
, Issue.7122
, pp. 1022-1023
-
-
Ley, R.E.1
Turnbaugh, P.J.2
Klein, S.3
Gordon, J.I.4
-
66
-
-
33749997498
-
Reciprocal gut microbiota transplants from zebrafish and mice to germ-free recipients reveal host habitat selection
-
COI: 1:CAS:528:DC%2BD28XhtFOkt7rO, PID: 17055441
-
Rawls JF, Mahowald MA, Ley RE, Gordon JI (2006) Reciprocal gut microbiota transplants from zebrafish and mice to germ-free recipients reveal host habitat selection. Cell 127(2):423–433. doi:10.1016/j.cell.2006.08.043
-
(2006)
Cell
, vol.127
, Issue.2
, pp. 423-433
-
-
Rawls, J.F.1
Mahowald, M.A.2
Ley, R.E.3
Gordon, J.I.4
-
67
-
-
19544388278
-
Mucispirillum schaedleri gen. nov., sp. nov., a spiral-shaped bacterium colonizing the mucus layer of the gastrointestinal tract of laboratory rodents
-
COI: 1:CAS:528:DC%2BD2MXltlOmu7s%3D, PID: 15879255
-
Robertson BR, O’Rourke JL, Neilan BA, Vandamme P, On SL, Fox JG, Lee A (2005) Mucispirillum schaedleri gen. nov., sp. nov., a spiral-shaped bacterium colonizing the mucus layer of the gastrointestinal tract of laboratory rodents. Int J Syst Evol Microbiol 55(3):1199–1204
-
(2005)
Int J Syst Evol Microbiol
, vol.55
, Issue.3
, pp. 1199-1204
-
-
Robertson, B.R.1
O’Rourke, J.L.2
Neilan, B.A.3
Vandamme, P.4
On, S.L.5
Fox, J.G.6
Lee, A.7
-
68
-
-
0028800208
-
Comparison of 16S rRNA sequences of segmented filamentous bacteria isolated from mice, rats, and chickens and proposal of “Candidatus Arthromitus
-
COI: 1:CAS:528:DyaK28XivFGq
-
Snel J, Heinen P, Blok H, Carman R, Duncan A, Allen P, Collins M (1995) Comparison of 16S rRNA sequences of segmented filamentous bacteria isolated from mice, rats, and chickens and proposal of “Candidatus Arthromitus”. Int J Syst Evol Microbiol 45(4):780–782
-
(1995)
Int J Syst Evol Microbiol
, vol.45
, Issue.4
, pp. 780-782
-
-
Snel, J.1
Heinen, P.2
Blok, H.3
Carman, R.4
Duncan, A.5
Allen, P.6
Collins, M.7
-
69
-
-
1242296822
-
Aberrant expansion of segmented filamentous bacteria in IgA-deficient gut
-
COI: 1:CAS:528:DC%2BD2cXhs1Skurk%3D, PID: 14766966
-
Suzuki K, Meek B, Doi Y, Muramatsu M, Chiba T, Honjo T, Fagarasan S (2004) Aberrant expansion of segmented filamentous bacteria in IgA-deficient gut. Proc Nat Acad Sci USA 101(7):1981–1986
-
(2004)
Proc Nat Acad Sci USA
, vol.101
, Issue.7
, pp. 1981-1986
-
-
Suzuki, K.1
Meek, B.2
Doi, Y.3
Muramatsu, M.4
Chiba, T.5
Honjo, T.6
Fagarasan, S.7
-
70
-
-
70349742524
-
The key role of segmented filamentous bacteria in the coordinated maturation of gut helper T cell responses
-
COI: 1:CAS:528:DC%2BD1MXhsVChtLrF, PID: 19833089
-
Gaboriau-Routhiau V, Rakotobe S, Lécuyer E, Mulder I, Lan A, Bridonneau C et al (2009) The key role of segmented filamentous bacteria in the coordinated maturation of gut helper T cell responses. Immunity 31(4):677–689. doi:10.1016/j.immuni.2009.08.020
-
(2009)
Immunity
, vol.31
, Issue.4
, pp. 677-689
-
-
Gaboriau-Routhiau, V.1
Rakotobe, S.2
Lécuyer, E.3
Mulder, I.4
Lan, A.5
Bridonneau, C.6
-
71
-
-
70350343544
-
Induction of intestinal Th17 cells by segmented filamentous bacteria
-
COI: 1:CAS:528:DC%2BD1MXhsFKltL%2FL, PID: 19836068
-
Ivanov II, Atarashi K, Manel N, Brodie EL, Shima T, Karaoz U et al (2009) Induction of intestinal Th17 cells by segmented filamentous bacteria. Cell 139(3):485–498. doi:10.1016/j.cell.2009.09.033
-
(2009)
Cell
, vol.139
, Issue.3
, pp. 485-498
-
-
Ivanov, I.I.1
Atarashi, K.2
Manel, N.3
Brodie, E.L.4
Shima, T.5
Karaoz, U.6
-
72
-
-
84876337823
-
Comparative analysis of the distribution of segmented filamentous bacteria in humans, mice and chickens
-
COI: 1:CAS:528:DC%2BC3sXivFOnsbo%3D, PID: 23151642
-
Yin Y, Wang Y, Zhu L, Liu W, Liao N, Jiang M et al (2013) Comparative analysis of the distribution of segmented filamentous bacteria in humans, mice and chickens. ISME J 7(3):615–621. doi:10.1038/ismej.2012.128
-
(2013)
ISME J
, vol.7
, Issue.3
, pp. 615-621
-
-
Yin, Y.1
Wang, Y.2
Zhu, L.3
Liu, W.4
Liao, N.5
Jiang, M.6
-
73
-
-
84877077675
-
Quantitatively different, yet qualitatively alike: a meta-analysis of the mouse core gut microbiome with a view towards the human gut microbiome
-
COI: 1:CAS:528:DC%2BC3sXnsFajsLk%3D, PID: 23658749
-
Krych L, Hansen CH, Hansen AK, van den Berg FW, Nielsen DS (2013) Quantitatively different, yet qualitatively alike: a meta-analysis of the mouse core gut microbiome with a view towards the human gut microbiome. PLoS One 8(5):e62578. doi:10.1371/journal.pone.0062578
-
(2013)
PLoS One
, vol.8
, Issue.5
-
-
Krych, L.1
Hansen, C.H.2
Hansen, A.K.3
van den Berg, F.W.4
Nielsen, D.S.5
-
74
-
-
84920404296
-
How informative is the mouse for human gut microbiota research?
-
COI: 1:CAS:528:DC%2BC2MXosFSiu7k%3D
-
Nguyen TL, Vieira-Silva S, Liston A, Raes J (2015) How informative is the mouse for human gut microbiota research? Dis Models Mech 8(1):1–16. doi:10.1242/dmm.017400
-
(2015)
Dis Models Mech
, vol.8
, Issue.1
, pp. 1-16
-
-
Nguyen, T.L.1
Vieira-Silva, S.2
Liston, A.3
Raes, J.4
-
75
-
-
84872687670
-
Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice
-
PID: 23347395
-
Hildebrand F, Nguyen TL, Brinkman B, Yunta RG, Cauwe B, Vandenabeele P et al (2013) Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice. Genome Biol 14(1):R4. doi:10.1186/gb-2013-14-1-r4
-
(2013)
Genome Biol
, vol.14
, Issue.1
, pp. R4
-
-
Hildebrand, F.1
Nguyen, T.L.2
Brinkman, B.3
Yunta, R.G.4
Cauwe, B.5
Vandenabeele, P.6
-
76
-
-
84943607837
-
A catalog of the mouse gut metagenome
-
COI: 1:CAS:528:DC%2BC2MXhsFersLzP, PID: 26414350
-
Xiao L, Feng Q, Liang S, Sonne SB, Xia Z, Qiu X et al (2015) A catalog of the mouse gut metagenome. Nat Biotechnol 33(10):1103–1108. doi:10.1038/nbt.3353
-
(2015)
Nat Biotechnol
, vol.33
, Issue.10
, pp. 1103-1108
-
-
Xiao, L.1
Feng, Q.2
Liang, S.3
Sonne, S.B.4
Xia, Z.5
Qiu, X.6
-
77
-
-
84994399678
-
Culture of previously uncultured members of the human gut microbiota by culturomics
-
COI: 1:CAS:528:DC%2BC2sXkvFyruro%3D, PID: 27819657
-
Lagier J-C, Khelaifia S, Alou MT, Ndongo S, Dione N, Hugon P et al (2016) Culture of previously uncultured members of the human gut microbiota by culturomics. Nat Microbiol 1:16203
-
(2016)
Nat Microbiol
, vol.1
, pp. 16203
-
-
Lagier, J.-C.1
Khelaifia, S.2
Alou, M.T.3
Ndongo, S.4
Dione, N.5
Hugon, P.6
-
78
-
-
84927692256
-
The first 1000 cultured species of the human gastrointestinal microbiota
-
PID: 24861948
-
Rajilic-Stojanovic M, de Vos WM (2014) The first 1000 cultured species of the human gastrointestinal microbiota. FEMS Microbiol Rev. doi:10.1111/1574-6976.12075
-
(2014)
FEMS Microbiol Rev
-
-
Rajilic-Stojanovic, M.1
de Vos, W.M.2
-
79
-
-
84981341034
-
The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota
-
COI: 1:CAS:528:DC%2BC2sXkvFyrsLs%3D, PID: 27670113
-
Lagkouvardos I, Pukall R, Abt B, Foesel BU, Meier-Kolthoff JP, Kumar N et al (2016) The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota. Nat Microbiol 1:16131
-
(2016)
Nat Microbiol
, vol.1
, pp. 16131
-
-
Lagkouvardos, I.1
Pukall, R.2
Abt, B.3
Foesel, B.U.4
Meier-Kolthoff, J.P.5
Kumar, N.6
-
80
-
-
84867225799
-
The role of the gut microbiota in nutrition and health
-
COI: 1:CAS:528:DC%2BC38XhsVKmurrF, PID: 22945443
-
Flint HJ, Scott KP, Louis P, Duncan SH (2012) The role of the gut microbiota in nutrition and health. Nat Rev Gastroenterol Hepatol 9(10):577–589. doi:10.1038/nrgastro.2012.156
-
(2012)
Nat Rev Gastroenterol Hepatol
, vol.9
, Issue.10
, pp. 577-589
-
-
Flint, H.J.1
Scott, K.P.2
Louis, P.3
Duncan, S.H.4
-
81
-
-
84945485419
-
Marked seasonal variation in the wild mouse gut microbiota
-
COI: 1:CAS:528:DC%2BC2MXhslWlu7vO, PID: 26023870
-
Maurice CF, Knowles SC, Ladau J, Pollard KS, Fenton A, Pedersen AB, Turnbaugh PJ (2015) Marked seasonal variation in the wild mouse gut microbiota. ISME J 9(11):2423–2434
-
(2015)
ISME J
, vol.9
, Issue.11
, pp. 2423-2434
-
-
Maurice, C.F.1
Knowles, S.C.2
Ladau, J.3
Pollard, K.S.4
Fenton, A.5
Pedersen, A.B.6
Turnbaugh, P.J.7
-
82
-
-
80755185875
-
Altered gut microbiota and endocannabinoid system tone in obese and diabetic leptin-resistant mice: impact on apelin regulation in adipose tissue
-
COI: 1:CAS:528:DC%2BC3MXptFyns7g%3D, PID: 21808634
-
Geurts L, Lazarevic V, Derrien M, Everard A, Van Roye M, Knauf C et al (2011) Altered gut microbiota and endocannabinoid system tone in obese and diabetic leptin-resistant mice: impact on apelin regulation in adipose tissue. Front Microbiol 2:149. doi:10.3389/fmicb.2011.00149
-
(2011)
Front Microbiol
, vol.2
, pp. 149
-
-
Geurts, L.1
Lazarevic, V.2
Derrien, M.3
Everard, A.4
Van Roye, M.5
Knauf, C.6
-
83
-
-
23344442120
-
Obesity alters gut microbial ecology
-
COI: 1:CAS:528:DC%2BD2MXnvVWju7g%3D, PID: 16033867
-
Ley RE, Backhed F, Turnbaugh P, Lozupone CA, Knight RD, Gordon JI (2005) Obesity alters gut microbial ecology. Proc Natl Acad Sci USA 102(31):11070–11075
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.31
, pp. 11070-11075
-
-
Ley, R.E.1
Backhed, F.2
Turnbaugh, P.3
Lozupone, C.A.4
Knight, R.D.5
Gordon, J.I.6
-
84
-
-
41849127118
-
Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome
-
COI: 1:CAS:528:DC%2BD1cXmtlejur0%3D, PID: 18407065
-
Turnbaugh PJ, Backhed F, Fulton L, Gordon JI (2008) Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome. Cell Host Microbe 3(4):213–223
-
(2008)
Cell Host Microbe
, vol.3
, Issue.4
, pp. 213-223
-
-
Turnbaugh, P.J.1
Backhed, F.2
Fulton, L.3
Gordon, J.I.4
-
85
-
-
77950669604
-
The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice
-
PID: 20368178
-
Turnbaugh PJ, Ridaura VK, Faith JJ, Rey FE, Knight R, Gordon JI (2009) The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. Sci Transl Med 1(6):6ra14
-
(2009)
Sci Transl Med
, vol.1
, Issue.6
, pp. 6ra14
-
-
Turnbaugh, P.J.1
Ridaura, V.K.2
Faith, J.J.3
Rey, F.E.4
Knight, R.5
Gordon, J.I.6
-
86
-
-
84983482306
-
Humanized microbiota mice as a model of recurrent Clostridium difficile disease
-
PID: 26289776
-
Collins J, Auchtung JM, Schaefer L, Eaton KA, Britton RA (2015) Humanized microbiota mice as a model of recurrent Clostridium difficile disease. Microbiome 3:35. doi:10.1186/s40168-015-0097-2
-
(2015)
Microbiome
, vol.3
, pp. 35
-
-
Collins, J.1
Auchtung, J.M.2
Schaefer, L.3
Eaton, K.A.4
Britton, R.A.5
-
87
-
-
84884414277
-
Intestinal microbiota determines development of non-alcoholic fatty liver disease in mice
-
PID: 23197411
-
Le Roy T, Llopis M, Lepage P, Bruneau A, Rabot S, Bevilacqua C et al (2013) Intestinal microbiota determines development of non-alcoholic fatty liver disease in mice. Gut 62(12):1787–1794. doi:10.1136/gutjnl-2012-303816
-
(2013)
Gut
, vol.62
, Issue.12
, pp. 1787-1794
-
-
Le Roy, T.1
Llopis, M.2
Lepage, P.3
Bruneau, A.4
Rabot, S.5
Bevilacqua, C.6
-
88
-
-
80051535923
-
The intestinal microbiota affect central levels of brain-derived neurotropic factor and behavior in mice
-
COI: 1:CAS:528:DC%2BC3MXpvFOqtL4%3D, PID: 21683077
-
Bercik P, Denou E, Collins J, Jackson W, Lu J, Jury J et al (2011) The intestinal microbiota affect central levels of brain-derived neurotropic factor and behavior in mice. Gastroenterology 141(2):599–609, 609 e591–593. doi:10.1053/j.gastro.2011.04.052
-
(2011)
Gastroenterology
, vol.141
, Issue.2
, pp. 599-609
-
-
Bercik, P.1
Denou, E.2
Collins, J.3
Jackson, W.4
Lu, J.5
Jury, J.6
-
89
-
-
84984551811
-
Akkermansia muciniphila and Helicobacter typhlonius modulate intestinal tumor development in mice
-
COI: 1:CAS:528:DC%2BC28Xht1GjsrrI, PID: 26320104
-
Dingemanse C, Belzer C, van Hijum SA, Günthel M, Salvatori D, den Dunnen JT et al (2015) Akkermansia muciniphila and Helicobacter typhlonius modulate intestinal tumor development in mice. Carcinogenesis 36(11):1388–1396
-
(2015)
Carcinogenesis
, vol.36
, Issue.11
, pp. 1388-1396
-
-
Dingemanse, C.1
Belzer, C.2
van Hijum, S.A.3
Günthel, M.4
Salvatori, D.5
den Dunnen, J.T.6
-
90
-
-
77649138063
-
Site and strain-specific variation in gut microbiota profiles and metabolism in experimental mice
-
PID: 20052418
-
Friswell MK, Gika H, Stratford IJ, Theodoridis G, Telfer B, Wilson ID, McBain AJ (2010) Site and strain-specific variation in gut microbiota profiles and metabolism in experimental mice. PLoS One 5(1):e8584. doi:10.1371/journal.pone.0008584
-
(2010)
PLoS One
, vol.5
, Issue.1
-
-
Friswell, M.K.1
Gika, H.2
Stratford, I.J.3
Theodoridis, G.4
Telfer, B.5
Wilson, I.D.6
McBain, A.J.7
-
91
-
-
84942753861
-
Towards microbial fermentation metabolites as markers for health benefits of prebiotics
-
COI: 1:CAS:528:DC%2BC2MXhsVCiu77K, PID: 26156216
-
Verbeke KA, Boobis AR, Chiodini A, Edwards CA, Franck A, Kleerebezem M et al (2015) Towards microbial fermentation metabolites as markers for health benefits of prebiotics. Nutr Res Rev 28(01):42–66
-
(2015)
Nutr Res Rev
, vol.28
, Issue.1
, pp. 42-66
-
-
Verbeke, K.A.1
Boobis, A.R.2
Chiodini, A.3
Edwards, C.A.4
Franck, A.5
Kleerebezem, M.6
-
92
-
-
79951514404
-
Genotype is a stronger determinant than sex of the mouse gut microbiota
-
PID: 21181142
-
Kovacs A, Ben-Jacob N, Tayem H, Halperin E, Iraqi FA, Gophna U (2011) Genotype is a stronger determinant than sex of the mouse gut microbiota. Microb Ecol 61(2):423–428. doi:10.1007/s00248-010-9787-2
-
(2011)
Microb Ecol
, vol.61
, Issue.2
, pp. 423-428
-
-
Kovacs, A.1
Ben-Jacob, N.2
Tayem, H.3
Halperin, E.4
Iraqi, F.A.5
Gophna, U.6
-
93
-
-
84996479950
-
Host genetics and diet, but not immunoglobulin A expression, converge to shape compositional features of the gut microbiome in an advanced intercross population of mice
-
PID: 25516416
-
Leamy LJ, Kelly SA, Nietfeldt J, Legge RM, Ma F, Hua K et al (2014) Host genetics and diet, but not immunoglobulin A expression, converge to shape compositional features of the gut microbiome in an advanced intercross population of mice. Genome Biol 15(12):552. doi:10.1186/s13059-014-0552-6
-
(2014)
Genome Biol
, vol.15
, Issue.12
, pp. 552
-
-
Leamy, L.J.1
Kelly, S.A.2
Nietfeldt, J.3
Legge, R.M.4
Ma, F.5
Hua, K.6
-
94
-
-
84983631388
-
Effect of a long-term high-protein diet on survival, obesity development, and gut microbiota in mice
-
Kiilerich P, Myrmel LS, Fjaere E, Hao Q, Hugenholtz F, Sonne SB et al (2016) Effect of a long-term high-protein diet on survival, obesity development, and gut microbiota in mice. Am J Physiol Endocrinol Metabol 310(11):E886–E899. doi:10.1152/ajpendo.00363.2015
-
(2016)
Am J Physiol Endocrinol Metabol
, vol.310
, Issue.11
, pp. E886-E899
-
-
Kiilerich, P.1
Myrmel, L.S.2
Fjaere, E.3
Hao, Q.4
Hugenholtz, F.5
Sonne, S.B.6
-
95
-
-
84938547558
-
Comparison of the effects of five dietary fibers on mucosal transcriptional profiles, and luminal microbiota composition and SCFA concentrations in murine colon
-
COI: 1:CAS:528:DC%2BC2MXhtVSgtbrM, PID: 25914036
-
Lange K, Hugenholtz F, Jonathan MC, Schols HA, Kleerebezem M, Smidt H et al (2015) Comparison of the effects of five dietary fibers on mucosal transcriptional profiles, and luminal microbiota composition and SCFA concentrations in murine colon. Mol Nutr Food Res 59(8):1590–1602. doi:10.1002/mnfr.201400597
-
(2015)
Mol Nutr Food Res
, vol.59
, Issue.8
, pp. 1590-1602
-
-
Lange, K.1
Hugenholtz, F.2
Jonathan, M.C.3
Schols, H.A.4
Kleerebezem, M.5
Smidt, H.6
-
96
-
-
84962214650
-
Identification of commensal species positively correlated with early stress responses to a compromised mucus barrier
-
Sovran B, Lu P, Loonen LM, Hugenholtz F, Belzer C, Stolte EH et al (2016) Identification of commensal species positively correlated with early stress responses to a compromised mucus barrier. Inflam Bowel Dis 22(4):826–840. doi:10.1097/MIB.0000000000000688
-
(2016)
Inflam Bowel Dis
, vol.22
, Issue.4
, pp. 826-840
-
-
Sovran, B.1
Lu, P.2
Loonen, L.M.3
Hugenholtz, F.4
Belzer, C.5
Stolte, E.H.6
-
97
-
-
85017318928
-
Tryptophan restriction arrests B cell development and enhances microbial diversity in WT and prematurely aging Ercc1-/Delta7 mice
-
van Beek AA, Hugenholtz F, Meijer B, Sovran B, Perdijk O, Vermeij WP et al (2016) Tryptophan restriction arrests B cell development and enhances microbial diversity in WT and prematurely aging Ercc1-/Delta7 mice. J Leuk Biol. doi:10.1189/jlb.1HI0216-062RR
-
(2016)
J Leuk Biol
-
-
van Beek, A.A.1
Hugenholtz, F.2
Meijer, B.3
Sovran, B.4
Perdijk, O.5
Vermeij, W.P.6
-
98
-
-
84997354284
-
Supplementation with Lactobacillus plantarum WCFS1 prevents decline of mucus barrier in colon of accelerated aging Ercc1-/Delta7 mice
-
PID: 27774093
-
van Beek AA, Sovran B, Hugenholtz F, Meijer B, Hoogerland JA, Mihailova V et al (2016) Supplementation with Lactobacillus plantarum WCFS1 prevents decline of mucus barrier in colon of accelerated aging Ercc1-/Delta7 mice. Front Immunol 7:408. doi:10.3389/fimmu.2016.00408
-
(2016)
Front Immunol
, vol.7
, pp. 408
-
-
van Beek, A.A.1
Sovran, B.2
Hugenholtz, F.3
Meijer, B.4
Hoogerland, J.A.5
Mihailova, V.6
-
99
-
-
85039993195
-
-
(in submission)
-
Hugenholtz F, Davids M, Schwarz J, Muller M, Tomé D, Schaap PJ et al (2017) Metatranscriptome analysis of the microbial fermentation of dietary milk proteins in the murine gut (in submission)
-
(2017)
Metatranscriptome analysis of the microbial fermentation of dietary milk proteins in the murine gut
-
-
Hugenholtz, F.1
Davids, M.2
Schwarz, J.3
Muller, M.4
Tomé, D.5
Schaap, P.J.6
-
100
-
-
85040019710
-
-
(in submission)
-
Hugenholtz F, Lange K, Davids M, Schaap PJ, Muller M, Hooiveld GJ et al (2017) Linking the fate of dietary fibres in the murine caecum to microbial transcriptome patterns (in submission)
-
(2017)
Linking the fate of dietary fibres in the murine caecum to microbial transcriptome patterns
-
-
Hugenholtz, F.1
Lange, K.2
Davids, M.3
Schaap, P.J.4
Muller, M.5
Hooiveld, G.J.6
-
101
-
-
84878465280
-
Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity
-
COI: 1:CAS:528:DC%2BC3sXhtFait7rM, PID: 23671105
-
Everard A, Belzer C, Geurts L, Ouwerkerk JP, Druart C, Bindels LB et al (2013) Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity. Proc Natl Acad Sci USA 110(22):9066–9071. doi:10.1073/pnas.1219451110
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.22
, pp. 9066-9071
-
-
Everard, A.1
Belzer, C.2
Geurts, L.3
Ouwerkerk, J.P.4
Druart, C.5
Bindels, L.B.6
-
103
-
-
79952748287
-
Unravelling the effects of the environment and host genotype on the gut microbiome
-
COI: 1:CAS:528:DC%2BC3MXjt1WntL4%3D, PID: 21407244
-
Spor A, Koren O, Ley R (2011) Unravelling the effects of the environment and host genotype on the gut microbiome. Nat Rev Microbiol 9(4):279–290. doi:10.1038/nrmicro2540
-
(2011)
Nat Rev Microbiol
, vol.9
, Issue.4
, pp. 279-290
-
-
Spor, A.1
Koren, O.2
Ley, R.3
-
104
-
-
84875367117
-
Gut bacteria–host metabolic interplay during conventionalisation of the mouse germfree colon
-
PID: 23178667
-
El Aidy S, Derrien M, Merrifield CA, Levenez F, Dore J, Boekschoten MV et al (2013) Gut bacteria–host metabolic interplay during conventionalisation of the mouse germfree colon. ISME J 7(4):743–755. doi:10.1038/ismej.2012.142
-
(2013)
ISME J
, vol.7
, Issue.4
, pp. 743-755
-
-
El Aidy, S.1
Derrien, M.2
Merrifield, C.A.3
Levenez, F.4
Dore, J.5
Boekschoten, M.V.6
-
105
-
-
84871142014
-
Dietary heme alters microbiota and mucosa of mouse colon without functional changes in host–microbe cross-talk
-
COI: 1:CAS:528:DC%2BC38XhvFSks7bJ, PID: 23239972
-
Ijssennagger N, Derrien M, van Doorn GM, Rijnierse A, van den Bogert B, Muller M et al (2012) Dietary heme alters microbiota and mucosa of mouse colon without functional changes in host–microbe cross-talk. PLoS One 7(12):e49868. doi:10.1371/journal.pone.0049868
-
(2012)
PLoS One
, vol.7
, Issue.12
-
-
Ijssennagger, N.1
Derrien, M.2
van Doorn, G.M.3
Rijnierse, A.4
van den Bogert, B.5
Muller, M.6
-
106
-
-
67649945513
-
Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults
-
COI: 1:CAS:528:DC%2BD1MXptlyhu7w%3D, PID: 19508560
-
Rajilic-Stojanovic M, Heilig HG, Molenaar D, Kajander K, Surakka A, Smidt H, de Vos WM (2009) Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults. Environ Microbiol 11(7):1736–1751. doi:10.1111/j.1462-2920.2009.01900.x
-
(2009)
Environ Microbiol
, vol.11
, Issue.7
, pp. 1736-1751
-
-
Rajilic-Stojanovic, M.1
Heilig, H.G.2
Molenaar, D.3
Kajander, K.4
Surakka, A.5
Smidt, H.6
de Vos, W.M.7
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