-
1
-
-
84927728238
-
A simple cage-autonomous method for the maintenance of the barrier status of germ-free mice during experimentation
-
Hecht, G. et al. A simple cage-autonomous method for the maintenance of the barrier status of germ-free mice during experimentation. Lab. Anim. 48, 292-7 (2014).
-
(2014)
Lab. Anim.
, vol.48
, pp. 292-297
-
-
Hecht, G.1
-
2
-
-
84944446151
-
Potential for using a hermetically-sealed, positive-pressured isocage system for studies involving germ-free mice outside a flexible-film isolator
-
Paik, J. et al. Potential for using a hermetically-sealed, positive-pressured isocage system for studies involving germ-free mice outside a flexible-film isolator. Gut Microbes 6, 255-65 (2015).
-
(2015)
Gut Microbes
, vol.6
, pp. 255-265
-
-
Paik, J.1
-
3
-
-
33746005985
-
Microbiological monitoring of laboratory mice and biocontainment in individually ventilated cages: A field study
-
Brielmeier, M. et al. Microbiological monitoring of laboratory mice and biocontainment in individually ventilated cages: a field study. Lab. Anim. 40, 247-60 (2006).
-
(2006)
Lab. Anim.
, vol.40
, pp. 247-260
-
-
Brielmeier, M.1
-
4
-
-
78649428063
-
Variation in the gut microbiota of laboratory mice is related to both genetic and environmental factors
-
Hufeldt, M. R., Nielsen, D. S., Vogensen, F. K., Midtvedt, T. & Hansen, A. K. Variation in the gut microbiota of laboratory mice is related to both genetic and environmental factors. Comp. Med. 60, 336-47 (2010).
-
(2010)
Comp. Med.
, vol.60
, pp. 336-347
-
-
Hufeldt, M.R.1
Nielsen, D.S.2
Vogensen, F.K.3
Midtvedt, T.4
Hansen, A.K.5
-
5
-
-
84911873660
-
Composition of intestinal microbiota in immune-deficient mice kept in three different housing conditions
-
Thoene-Reineke, C. et al. Composition of intestinal microbiota in immune-deficient mice kept in three different housing conditions. PLoS One 9, e113406 (2014).
-
(2014)
PLoS One
, vol.9
-
-
Thoene-Reineke, C.1
-
6
-
-
84907428525
-
Dietary xylo-oligosaccharide stimulates intestinal bifidobacteria and lactobacilli but has limited effect on intestinal integrity in rats
-
Christensen, E. G., Licht, T. R., Leser, T. D. & Bahl, M. I. Dietary xylo-oligosaccharide stimulates intestinal bifidobacteria and lactobacilli but has limited effect on intestinal integrity in rats. BMC Res. Notes 7, 660 (2014).
-
(2014)
BMC Res. Notes
, vol.7
, pp. 660
-
-
Christensen, E.G.1
Licht, T.R.2
Leser, T.D.3
Bahl, M.I.4
-
7
-
-
84907525758
-
Data analysis for 16S microbial profiling from different benchtop sequencing platforms
-
Pylro, V. S. et al. Data analysis for 16S microbial profiling from different benchtop sequencing platforms. J. Microbiol. Methods 107, 30-7 (2014).
-
(2014)
J. Microbiol. Methods
, vol.107
, pp. 30-37
-
-
Pylro, V.S.1
-
8
-
-
84884904719
-
UPARSE: Highly accurate OTU sequences from microbial amplicon reads
-
Edgar, R. C. UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat. Methods 10, 996-8 (2013).
-
(2013)
Nat. Methods
, vol.10
, pp. 996-998
-
-
Edgar, R.C.1
-
9
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
Edgar, R. C., Haas, B. J., Clemente, J. C., Quince, C. & Knight, R. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27, 2194-200 (2011).
-
(2011)
Bioinformatics
, vol.27
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
10
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso, J. G. et al. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7, 335-6 (2010).
-
(2010)
Nat. Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
-
11
-
-
84873739311
-
The SILVA ribosomal RNA gene database project: Improved data processing and web-based tools
-
Quast, C. et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res. 41, D590-6 (2013).
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D590-D596
-
-
Quast, C.1
-
12
-
-
29144464937
-
UniFrac: A new phylogenetic method for comparing microbial communities
-
Lozupone, C. & Knight, R. UniFrac: a new phylogenetic method for comparing microbial communities. Appl. Environ. Microbiol. 71, 8228-35 (2005).
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 8228-8235
-
-
Lozupone, C.1
Knight, R.2
-
13
-
-
84991526597
-
EMPeror: A tool for visualizing high-throughput microbial community data
-
Vázquez-Baeza, Y., Pirrung, M., Gonzalez, A. & Knight, R. EMPeror: a tool for visualizing high-throughput microbial community data. Gigascience 2, 16 (2013).
-
(2013)
Gigascience
, vol.2
, pp. 16
-
-
Vázquez-Baeza, Y.1
Pirrung, M.2
Gonzalez, A.3
Knight, R.4
-
14
-
-
84861954448
-
'Candidatus arthromitus' revised: Segmented filamentous bacteria in arthropod guts are members of lachnospiraceae
-
Thompson, C. L., Vier, R., Mikaelyan, A., Wienemann, T. & Brune, A. 'Candidatus Arthromitus' revised: segmented filamentous bacteria in arthropod guts are members of Lachnospiraceae. Environ. Microbiol. 14, 1454-65 (2012).
-
(2012)
Environ. Microbiol.
, vol.14
, pp. 1454-1465
-
-
Thompson, C.L.1
Vier, R.2
Mikaelyan, A.3
Wienemann, T.4
Brune, A.5
-
15
-
-
84874037740
-
Immune-modulating gut symbionts are not 'Candidatus Arthromitus'
-
Thompson, C. L., Mikaelyan, A. & Brune, A. Immune-modulating gut symbionts are not 'Candidatus Arthromitus'. Mucosal Immunol. 6, 200-201 (2013).
-
(2013)
Mucosal Immunol.
, vol.6
, pp. 200-201
-
-
Thompson, C.L.1
Mikaelyan, A.2
Brune, A.3
-
16
-
-
84878340548
-
Biphasic assembly of the murine intestinal microbiota during early development
-
Pantoja-Feliciano, I. G. et al. Biphasic assembly of the murine intestinal microbiota during early development. ISME J. 7, 1112-1115 (2013).
-
(2013)
ISME J.
, vol.7
, pp. 1112-1115
-
-
Pantoja-Feliciano, I.G.1
-
17
-
-
84861720909
-
Comparative evaluation of establishing a human gut microbial community within rodent models
-
Wos-Oxley, M. et al. Comparative evaluation of establishing a human gut microbial community within rodent models. Gut Microbes 3, 234-49 (2012).
-
(2012)
Gut Microbes
, vol.3
, pp. 234-249
-
-
Wos-Oxley, M.1
-
18
-
-
77950669604
-
The effect of diet on the human gut microbiome: A metagenomic analysis in humanized gnotobiotic mice
-
Turnbaugh, P. J. et al. The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. Sci. Transl. Med. 1, 6ra14 (2009).
-
(2009)
Sci. Transl. Med.
, vol.1
, pp. 6ra14
-
-
Turnbaugh, P.J.1
-
19
-
-
84995744397
-
Environmental spread of microbes impacts the development of metabolic phenotypes in mice transplanted with microbial communities from humans
-
Zhang, L. et al. Environmental spread of microbes impacts the development of metabolic phenotypes in mice transplanted with microbial communities from humans. ISME J., doi: 10.1038/ismej.2016.151 (2016).
-
(2016)
ISME J.
-
-
Zhang, L.1
-
20
-
-
84858956036
-
Patterns of early gut colonization shape future immune responses of the host
-
Hansen, C. H. F. et al. Patterns of early gut colonization shape future immune responses of the host. PLoS One 7, e34043 (2012).
-
(2012)
PLoS One
, vol.7
-
-
Hansen, C.H.F.1
-
21
-
-
84960358857
-
Antibiotic-treated versus germ-free rodents for microbiota transplantation studies
-
Lundberg, R., Toft, M. F., August, B., Hansen, A. K. & Hansen, C. H. F. Antibiotic-treated versus germ-free rodents for microbiota transplantation studies. Gut Microbes 7, 68-74 (2016).
-
(2016)
Gut Microbes
, vol.7
, pp. 68-74
-
-
Lundberg, R.1
Toft, M.F.2
August, B.3
Hansen, A.K.4
Hansen, C.H.F.5
-
22
-
-
84973904844
-
The structural alteration of gut microbiota in low-birth-weight mice undergoing accelerated postnatal growth
-
Wang, J. et al. The structural alteration of gut microbiota in low-birth-weight mice undergoing accelerated postnatal growth. Sci. Rep. 6, 27780 (2016).
-
(2016)
Sci. Rep.
, vol.6
, pp. 27780
-
-
Wang, J.1
-
23
-
-
84877077675
-
Quantitatively different, yet qualitatively alike: A meta-analysis of the mouse core gut microbiome with a view towards the human gut microbiome
-
Krych, L., Hansen, C. H. F., Hansen, A. K., van den Berg, F. W. J. & Nielsen, D. S. Quantitatively different, yet qualitatively alike: a meta-analysis of the mouse core gut microbiome with a view towards the human gut microbiome. PLoS One 8, e62578 (2013).
-
(2013)
PLoS One
, vol.8
-
-
Krych, L.1
Hansen, C.H.F.2
Hansen, A.K.3
Van Den Berg, F.W.J.4
Nielsen, D.S.5
-
24
-
-
84881115697
-
Effects of age and strain on the microbiota colonization in an infant human flora-associated mouse model
-
Zeng, B. et al. Effects of age and strain on the microbiota colonization in an infant human flora-associated mouse model. Curr. Microbiol. 67, 313-21 (2013).
-
(2013)
Curr. Microbiol.
, vol.67
, pp. 313-321
-
-
Zeng, B.1
-
25
-
-
77649138063
-
Site and strain-specific variation in gut microbiota profiles and metabolism in experimental mice
-
Friswell, M. K. et al. Site and strain-specific variation in gut microbiota profiles and metabolism in experimental mice. PLoS One 5, e8584 (2010).
-
(2010)
PLoS One
, vol.5
-
-
Friswell, M.K.1
-
26
-
-
84943607837
-
A catalog of the mouse gut metagenome
-
Xiao, L. et al. A catalog of the mouse gut metagenome. Nat. Biotechnol. 33, 1103-8 (2015).
-
(2015)
Nat. Biotechnol.
, vol.33
, pp. 1103-1108
-
-
Xiao, L.1
-
27
-
-
84893089832
-
PH of drinking water influences the composition of gut microbiome and type 1 diabetes incidence
-
Sofi, M. H. et al. pH of drinking water influences the composition of gut microbiome and type 1 diabetes incidence. Diabetes 63, 632-44 (2014).
-
(2014)
Diabetes
, vol.63
, pp. 632-644
-
-
Sofi, M.H.1
-
28
-
-
84898678841
-
Consumption of acidic water alters the gut microbiome and decreases the risk of diabetes in NOD mice
-
Wolf, K. J. et al. Consumption of acidic water alters the gut microbiome and decreases the risk of diabetes in NOD mice. J. Histochem. Cytochem. 62, 237-50 (2014).
-
(2014)
J. Histochem. Cytochem.
, vol.62
, pp. 237-250
-
-
Wolf, K.J.1
-
29
-
-
84940850253
-
Chlorinated water modulates the development of colorectal tumors with chromosomal instability and gut microbiota in apc-deficient mice
-
Sasada, T. et al. Chlorinated Water Modulates the Development of Colorectal Tumors with Chromosomal Instability and Gut Microbiota in Apc-Deficient Mice. PLoS One 10, e0132435 (2015).
-
(2015)
PLoS One
, vol.10
-
-
Sasada, T.1
-
30
-
-
84867024598
-
Gut microbiota composition is correlated to grid floor induced stress and behavior in the BALB/c mouse
-
Bangsgaard Bendtsen, K. M. et al. Gut microbiota composition is correlated to grid floor induced stress and behavior in the BALB/c mouse. PLoS One 7, e46231 (2012).
-
(2012)
PLoS One
, vol.7
-
-
Bangsgaard Bendtsen, K.M.1
-
31
-
-
84938273954
-
Gut microbiota depletion from early adolescence in mice: Implications for brain and behaviour
-
Desbonnet, L. et al. Gut Microbiota Depletion from Early Adolescence in Mice: Implications for Brain and Behaviour. Brain. Behav. Immun., doi: 10.1016/j.bbi.2015.04.004 (2015).
-
(2015)
Brain. Behav. Immun.
-
-
Desbonnet, L.1
-
32
-
-
84888881657
-
Individually ventilated cages impose cold stress on laboratory mice: A source of systemic experimental variability
-
David, J. M., Knowles, S., Lamkin, D. M. & Stout, D. B. Individually ventilated cages impose cold stress on laboratory mice: a source of systemic experimental variability. J. Am. Assoc. Lab. Anim. Sci. 52, 738-44 (2013).
-
(2013)
J. Am. Assoc. Lab. Anim. Sci.
, vol.52
, pp. 738-744
-
-
David, J.M.1
Knowles, S.2
Lamkin, D.M.3
Stout, D.B.4
-
33
-
-
84886723193
-
Stochastic changes over time and not founder effects drive cage effects in microbial community assembly in a mouse model
-
McCafferty, J. et al. Stochastic changes over time and not founder effects drive cage effects in microbial community assembly in a mouse model. ISME J. 7, 2116-25 (2013).
-
(2013)
ISME J.
, vol.7
, pp. 2116-2125
-
-
McCafferty, J.1
-
34
-
-
84919779358
-
Impact of the gut microbiota on rodent models of human disease
-
Hansen, A. K., Friis Hansen, C. H., Krych, L. & Nielsen, D. S. Impact of the gut microbiota on rodent models of human disease. World J. Gastroenterol. 20, 17727-17736 (2014).
-
(2014)
World J. Gastroenterol.
, vol.20
, pp. 17727-17736
-
-
Hansen, A.K.1
Friis Hansen, C.H.2
Krych, L.3
Nielsen, D.S.4
-
35
-
-
84941755138
-
A review of applied aspects of dealing with gut microbiota impact on rodent models
-
Hansen, A. K., Krych, Ł., Nielsen, D. S. & Hansen, C. H. F. A Review of Applied Aspects of Dealing with Gut Microbiota Impact on Rodent Models. ILAR J. 56, 250-64 (2015).
-
(2015)
ILAR J.
, vol.56
, pp. 250-264
-
-
Hansen, A.K.1
Krych, Ł.2
Nielsen, D.S.3
Hansen, C.H.F.4
-
36
-
-
84928881439
-
Standardised animal models of host microbial mutualism
-
Macpherson, A. J. & McCoy, K. D. Standardised animal models of host microbial mutualism. Mucosal Immunol. 8, 476-486 (2015).
-
(2015)
Mucosal Immunol.
, vol.8
, pp. 476-486
-
-
Macpherson, A.J.1
McCoy, K.D.2
-
37
-
-
70350343544
-
Induction of intestinal Th17 cells by segmented filamentous bacteria
-
Ivanov, I. I. et al. Induction of intestinal Th17 cells by segmented filamentous bacteria. Cell 139, 485-98 (2009).
-
(2009)
Cell
, vol.139
, pp. 485-498
-
-
Ivanov, I.I.1
-
38
-
-
84922982129
-
Effects of vendor and genetic background on the composition of the fecal microbiota of inbred mice
-
Ericsson, A. C. et al. Effects of vendor and genetic background on the composition of the fecal microbiota of inbred mice. PLoS One 10, e0116704 (2015).
-
(2015)
PLoS One
, vol.10
-
-
Ericsson, A.C.1
-
39
-
-
84922160830
-
The composition of the gut microbiota shapes the colon mucus barrier
-
Jakobsson, H. E. et al. The composition of the gut microbiota shapes the colon mucus barrier. EMBO Rep. 16, 164-77 (2015).
-
(2015)
EMBO Rep.
, vol.16
, pp. 164-177
-
-
Jakobsson, H.E.1
-
40
-
-
84946060856
-
Differential susceptibility to colorectal cancer due to naturally occurring gut microbiota
-
Ericsson, A. C. et al. Differential susceptibility to colorectal cancer due to naturally occurring gut microbiota. Oncotarget 6, 33689-33704 (2015).
-
(2015)
Oncotarget
, vol.6
, pp. 33689-33704
-
-
Ericsson, A.C.1
-
41
-
-
84906827149
-
The microbiota regulates susceptibility to Fas-mediated acute hepatic injury
-
Celaj, S. et al. The microbiota regulates susceptibility to Fas-mediated acute hepatic injury. Lab. Invest. 94, 938-49 (2014).
-
(2014)
Lab. Invest.
, vol.94
, pp. 938-949
-
-
Celaj, S.1
-
42
-
-
84864473349
-
Variation in airway responsiveness of male C57BL/6 mice from 5 vendors
-
Chang, H.-Y. S., Mitzner, W. & Watson, J. Variation in airway responsiveness of male C57BL/6 mice from 5 vendors. J. Am. Assoc. Lab. Anim. Sci. 51, 401-6 (2012).
-
(2012)
J. Am. Assoc. Lab. Anim. Sci.
, vol.51
, pp. 401-406
-
-
Chang, H.-Y.S.1
Mitzner, W.2
Watson, J.3
-
43
-
-
84959017985
-
Variation in Taxonomic Composition of the Fecal Microbiota in an Inbred Mouse Strain across Individuals and Time
-
Hoy, Y. E. et al. Variation in Taxonomic Composition of the Fecal Microbiota in an Inbred Mouse Strain across Individuals and Time. PLoS One 10, e0142825 (2015).
-
(2015)
PLoS One
, vol.10
-
-
Hoy, Y.E.1
-
44
-
-
84870933587
-
Gastrointestinal microbiota and local inflammation during oxazolone-induced dermatitis in BALB/cA mice
-
Lundberg, R. et al. Gastrointestinal microbiota and local inflammation during oxazolone-induced dermatitis in BALB/cA mice. Comp. Med. 62, 371-80 (2012).
-
(2012)
Comp. Med.
, vol.62
, pp. 371-380
-
-
Lundberg, R.1
-
45
-
-
84896492510
-
Characterization of the gut microbiota in leptin deficient obese mice-Correlation to inflammatory and diabetic parameters
-
Ellekilde, M. et al. Characterization of the gut microbiota in leptin deficient obese mice-Correlation to inflammatory and diabetic parameters. Res. Vet. Sci. 96, 241-50 (2014).
-
(2014)
Res. Vet. Sci.
, vol.96
, pp. 241-250
-
-
Ellekilde, M.1
-
46
-
-
84978432644
-
Long-term maintenance of sterility following skin transplantation in germ-free mice
-
Theriault, B. et al. Long-term Maintenance of Sterility Following Skin Transplantation in Germ-free Mice. Transplant. direct 1, (2015).
-
(2015)
Transplant. Direct
, vol.1
-
-
Theriault, B.1
|