-
1
-
-
0037173615
-
Functional profiling of the Saccharomyces cerevisiae genome
-
Giaever G, Chu AM, Ni L, Connelly C, Riles L, Veronneau S, Dow S, Lucau-Danila A, Anderson K, Andre B, Arkin AP, Astromoff A, El-Bakkoury M, Bangham R, Benito R, Brachat S, Campanaro S, Curtiss M, Davis K, Deutschbauer A, Entian KD, Flaherty P, Foury F, Garfinkel DJ, Gerstein M, Gotte D, Guldener U, Hegemann JH, Hempel S, Herman Z, Jaramillo DF, Kelly DE, Kelly SL, Kotter P, LaBonte D, Lamb DC, Lan N, Liang H, Liao H, Liu L, Luo C, Lussier M, Mao R, Menard P, Ooi SL, Revuelta JL, Roberts CJ, Rose M, Ross-Macdonald P, Scherens B, et al. 2002. Functional profiling of the Saccharomyces cerevisiae genome. Nature 418:387-391. https://doi.org/10.1038/nature00935
-
(2002)
Nature
, vol.418
, pp. 387-391
-
-
Giaever, G.1
Chu, A.M.2
Ni, L.3
Connelly, C.4
Riles, L.5
Veronneau, S.6
Dow, S.7
Lucau-Danila, A.8
Anderson, K.9
Andre, B.10
Arkin, A.P.11
Astromoff, A.12
El-Bakkoury, M.13
Bangham, R.14
Benito, R.15
Brachat, S.16
Campanaro, S.17
Curtiss, M.18
Davis, K.19
Deutschbauer, A.20
Entian, K.D.21
Flaherty, P.22
Foury, F.23
Garfinkel, D.J.24
Gerstein, M.25
Gotte, D.26
Guldener, U.27
Hegemann, J.H.28
Hempel, S.29
Herman, Z.30
Jaramillo, D.F.31
Kelly, D.E.32
Kelly, S.L.33
Kotter, P.34
LaBonte, D.35
Lamb, D.C.36
Lan, N.37
Liang, H.38
Liao, H.39
Liu, L.40
Luo, C.41
Lussier, M.42
Mao, R.43
Menard, P.44
Ooi, S.L.45
Revuelta, J.L.46
Roberts, C.J.47
Rose, M.48
Ross-Macdonald, P.49
Scherens, B.50
more..
-
2
-
-
0035830860
-
Principles for the buffering of genetic variation
-
Hartman JLt, Garvik B, Hartwell L. 2001. Principles for the buffering of genetic variation. Science 291:1001-1004. https://doi.org/10.1126/science.291.5506.1001
-
(2001)
Science
, vol.291
, pp. 1001-1004
-
-
Hartman, J.L.1
Garvik, B.2
Hartwell, L.3
-
3
-
-
0035861532
-
Systematic genetic analysis with ordered arrays of yeast deletion mutants
-
Tong AH, Evangelista M, Parsons AB, Xu H, Bader GD, Page N, Robinson M, Raghibizadeh S, Hogue CW, Bussey H, Andrews B, Tyers M, Boone C. 2001. Systematic genetic analysis with ordered arrays of yeast deletion mutants. Science 294:2364-2368. https://doi.org/10.1126/science.1065810
-
(2001)
Science
, vol.294
, pp. 2364-2368
-
-
Tong, A.H.1
Evangelista, M.2
Parsons, A.B.3
Xu, H.4
Bader, G.D.5
Page, N.6
Robinson, M.7
Raghibizadeh, S.8
Hogue, C.W.9
Bussey, H.10
Andrews, B.11
Tyers, M.12
Boone, C.13
-
4
-
-
75649111192
-
The genetic landscape of a cell
-
Costanzo M, Baryshnikova A, Bellay J, Kim Y, Spear ED, Sevier CS, Ding H, Koh JL, Toufighi K, Mostafavi S, Prinz J, St Onge RP, VanderSluis B, Makhnevych T, Vizeacoumar FJ, Alizadeh S, Bahr S, Brost RL, Chen Y, Cokol M, Deshpande R, Li Z, Lin ZY, Liang W, Marback M, Paw J, San Luis BJ, Shuteriqi E, Tong AH, van Dyk N, Wallace IM, Whitney JA, Weirauch MT, Zhong G, Zhu H, Houry WA, Brudno M, Ragibizadeh S, Papp B, Pal C, Roth FP, Giaever G, Nislow C, Troyanskaya OG, Bussey H, Bader GD, Gingras AC, Morris QD, Kim PM, Kaiser CA, et al. 2010. The genetic landscape of a cell. Science 327:425-431. https://doi.org/10.1126/science.1180823
-
(2010)
Science
, vol.327
, pp. 425-431
-
-
Costanzo, M.1
Baryshnikova, A.2
Bellay, J.3
Kim, Y.4
Spear, E.D.5
Sevier, C.S.6
Ding, H.7
Koh, J.L.8
Toufighi, K.9
Mostafavi, S.10
Prinz, J.11
St Onge, R.P.12
VanderSluis, B.13
Makhnevych, T.14
Vizeacoumar, F.J.15
Alizadeh, S.16
Bahr, S.17
Brost, R.L.18
Chen, Y.19
Cokol, M.20
Deshpande, R.21
Li, Z.22
Lin, Z.Y.23
Liang, W.24
Marback, M.25
Paw, J.26
San Luis, B.J.27
Shuteriqi, E.28
Tong, A.H.29
van Dyk, N.30
Wallace, I.M.31
Whitney, J.A.32
Weirauch, M.T.33
Zhong, G.34
Zhu, H.35
Houry, W.A.36
Brudno, M.37
Ragibizadeh, S.38
Papp, B.39
Pal, C.40
Roth, F.P.41
Giaever, G.42
Nislow, C.43
Troyanskaya, O.G.44
Bussey, H.45
Bader, G.D.46
Gingras, A.C.47
Morris, Q.D.48
Kim, P.M.49
Kaiser, C.A.50
more..
-
5
-
-
84989216655
-
A global genetic interaction network maps a wiring diagram of cellular function
-
Costanzo M, VanderSluis B, Koch EN, Baryshnikova A, Pons C, Tan G, Wang W, Usaj M, Hanchard J, Lee SD, Pelechano V, Styles EB, Billmann M, van Leeuwen J, van Dyk N, Lin ZY, Kuzmin E, Nelson J, Piotrowski JS, Srikumar T, Bahr S, Chen Y, Deshpande R, Kurat CF, Li SC, Li Z, Usaj MM, Okada H, Pascoe N, San Luis BJ, Sharifpoor S, Shuteriqi E, Simpkins SW, Snider J, Suresh HG, Tan Y, Zhu H, Malod-Dognin N, Janjic V, Przulj N, Troyanskaya OG, Stagljar I, Xia T, Ohya Y, Gingras AC, Raught B, Boutros M, Steinmetz LM, Moore CL, Rosebrock AP, et al. 2016. A global genetic interaction network maps a wiring diagram of cellular function. Science 353:aaf1420. https://doi.org/10.1126/science.aaf1420
-
(2016)
Science
, vol.353
-
-
Costanzo, M.1
VanderSluis, B.2
Koch, E.N.3
Baryshnikova, A.4
Pons, C.5
Tan, G.6
Wang, W.7
Usaj, M.8
Hanchard, J.9
Lee, S.D.10
Pelechano, V.11
Styles, E.B.12
Billmann, M.13
van Leeuwen, J.14
van Dyk, N.15
Lin, Z.Y.16
Kuzmin, E.17
Nelson, J.18
Piotrowski, J.S.19
Srikumar, T.20
Bahr, S.21
Chen, Y.22
Deshpande, R.23
Kurat, C.F.24
Li, S.C.25
Li, Z.26
Usaj, M.M.27
Okada, H.28
Pascoe, N.29
San Luis, B.J.30
Sharifpoor, S.31
Shuteriqi, E.32
Simpkins, S.W.33
Snider, J.34
Suresh, H.G.35
Tan, Y.36
Zhu, H.37
Malod-Dognin, N.38
Janjic, V.39
Przulj, N.40
Troyanskaya, O.G.41
Stagljar, I.42
Xia, T.43
Ohya, Y.44
Gingras, A.C.45
Raught, B.46
Boutros, M.47
Steinmetz, L.M.48
Moore, C.L.49
Rosebrock, A.P.50
more..
-
6
-
-
42349100173
-
The chemical genomic portrait of yeast: uncovering a phenotype for all genes
-
Hillenmeyer ME, Fung E, Wildenhain J, Pierce SE, Hoon S, Lee W, Proctor M, St Onge RP, Tyers M, Koller D, Altman RB, Davis RW, Nislow C, Giaever G. 2008. The chemical genomic portrait of yeast: uncovering a phenotype for all genes. Science 320:362-365. https://doi.org/10.1126/science.1150021
-
(2008)
Science
, vol.320
, pp. 362-365
-
-
Hillenmeyer, M.E.1
Fung, E.2
Wildenhain, J.3
Pierce, S.E.4
Hoon, S.5
Lee, W.6
Proctor, M.7
St Onge, R.P.8
Tyers, M.9
Koller, D.10
Altman, R.B.11
Davis, R.W.12
Nislow, C.13
Giaever, G.14
-
7
-
-
77953255163
-
Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe
-
Kim DU, Hayles J, Kim D, Wood V, Park HO, Won M, Yoo HS, Duhig T, Nam M, Palmer G, Han S, Jeffery L, Baek ST, Lee H, Shim YS, Lee M, Kim L, Heo KS, Noh EJ, Lee AR, Jang YJ, Chung KS, Choi SJ, Park JY, Park Y, Kim HM, Park SK, Park HJ, Kang EJ, Kim HB, Kang HS, Park HM, Kim K, Song K, Song KB, Nurse P, Hoe KL. 2010. Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. Nat Biotechnol 28:617-623. https://doi.org/10.1038/nbt.1628
-
(2010)
Nat Biotechnol
, vol.28
, pp. 617-623
-
-
Kim, D.U.1
Hayles, J.2
Kim, D.3
Wood, V.4
Park, H.O.5
Won, M.6
Yoo, H.S.7
Duhig, T.8
Nam, M.9
Palmer, G.10
Han, S.11
Jeffery, L.12
Baek, S.T.13
Lee, H.14
Shim, Y.S.15
Lee, M.16
Kim, L.17
Heo, K.S.18
Noh, E.J.19
Lee, A.R.20
Jang, Y.J.21
Chung, K.S.22
Choi, S.J.23
Park, J.Y.24
Park, Y.25
Kim, H.M.26
Park, S.K.27
Park, H.J.28
Kang, E.J.29
Kim, H.B.30
Kang, H.S.31
Park, H.M.32
Kim, K.33
Song, K.34
Song, K.B.35
Nurse, P.36
Hoe, K.L.37
more..
-
8
-
-
0141818929
-
Large-scale essential gene identification in Candida albicans and applications to antifungal drug discovery
-
Roemer T, Jiang B, Davison J, Ketela T, Veillette K, Breton A, Tandia F, Linteau A, Sillaots S, Marta C, Martel N, Veronneau S, Lemieux S, Kauffman S, Becker J, Storms R, Boone C, Bussey H. 2003. Large-scale essential gene identification in Candida albicans and applications to antifungal drug discovery. Mol Microbiol 50:167-181. https://doi.org/10.1046/j.1365-2958.2003.03697.x
-
(2003)
Mol Microbiol
, vol.50
, pp. 167-181
-
-
Roemer, T.1
Jiang, B.2
Davison, J.3
Ketela, T.4
Veillette, K.5
Breton, A.6
Tandia, F.7
Linteau, A.8
Sillaots, S.9
Marta, C.10
Martel, N.11
Veronneau, S.12
Lemieux, S.13
Kauffman, S.14
Becker, J.15
Storms, R.16
Boone, C.17
Bussey, H.18
-
9
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
-
Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H. 2006. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol 2:2006.0008. https://doi.org/10.1038/msb4100050
-
(2006)
Mol Syst Biol
, vol.2
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Datsenko, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
-
10
-
-
0037448540
-
Systematic functional analysis of the Caenorhabditis elegans genome using RNAi
-
Kamath RS, Fraser AG, Dong Y, Poulin G, Durbin R, Gotta M, Kanapin A, Le Bot N, Moreno S, Sohrmann M, Welchman DP, Zipperlen P, Ahringer J. 2003. Systematic functional analysis of the Caenorhabditis elegans genome using RNAi. Nature 421:231-237. https://doi.org/10.1038/nature01278
-
(2003)
Nature
, vol.421
, pp. 231-237
-
-
Kamath, R.S.1
Fraser, A.G.2
Dong, Y.3
Poulin, G.4
Durbin, R.5
Gotta, M.6
Kanapin, A.7
Le Bot, N.8
Moreno, S.9
Sohrmann, M.10
Welchman, D.P.11
Zipperlen, P.12
Ahringer, J.13
-
11
-
-
0842309871
-
Genome-wide RNAi analysis of growth and viability in Drosophila cells
-
Boutros M, Kiger AA, Armknecht S, Kerr K, Hild M, Koch B, Haas SA, Paro R, Perrimon N, Heidelberg Fly Array C. 2004. Genome-wide RNAi analysis of growth and viability in Drosophila cells. Science 303:832-835. https://doi.org/10.1126/science.1091266
-
(2004)
Science
, vol.303
, pp. 832-835
-
-
Boutros, M.1
Kiger, A.A.2
Armknecht, S.3
Kerr, K.4
Hild, M.5
Koch, B.6
Haas, S.A.7
Paro, R.8
Perrimon, N.9
Heidelberg Fly Array, C.10
-
12
-
-
84989204804
-
Highthroughput discovery of novel developmental phenotypes
-
Dickinson ME, Flenniken AM, Ji X, Teboul L, Wong MD, White JK, Meehan TF, Weninger WJ, Westerberg H, Adissu H, Baker CN, Bower L, Brown JM, Caddle LB, Chiani F, Clary D, Cleak J, Daly MJ, Denegre JM, Doe B, Dolan ME, Edie SM, Fuchs H, Gailus-Durner V, Galli A, Gambadoro A, Gallegos J, Guo S, Horner NR, Hsu CW, Johnson SJ, Kalaga S, Keith LC, Lanoue L, Lawson TN, Lek M, Mark M, Marschall S, Mason J, McElwee ML, Newbigging S, Nutter LM, Peterson KA, Ramirez-Solis R, Rowland DJ, Ryder E, Samocha KE, Seavitt JR, Selloum M, Szoke-Kovacs Z, et al. 2016. Highthroughput discovery of novel developmental phenotypes. Nature 537: 508-514. https://doi.org/10.1038/nature19356
-
(2016)
Nature
, vol.537
, pp. 508-514
-
-
Dickinson, M.E.1
Flenniken, A.M.2
Ji, X.3
Teboul, L.4
Wong, M.D.5
White, J.K.6
Meehan, T.F.7
Weninger, W.J.8
Westerberg, H.9
Adissu, H.10
Baker, C.N.11
Bower, L.12
Brown, J.M.13
Caddle, L.B.14
Chiani, F.15
Clary, D.16
Cleak, J.17
Daly, M.J.18
Denegre, J.M.19
Doe, B.20
Dolan, M.E.21
Edie, S.M.22
Fuchs, H.23
Gailus-Durner, V.24
Galli, A.25
Gambadoro, A.26
Gallegos, J.27
Guo, S.28
Horner, N.R.29
Hsu, C.W.30
Johnson, S.J.31
Kalaga, S.32
Keith, L.C.33
Lanoue, L.34
Lawson, T.N.35
Lek, M.36
Mark, M.37
Marschall, S.38
Mason, J.39
McElwee, M.L.40
Newbigging, S.41
Nutter, L.M.42
Peterson, K.A.43
Ramirez-Solis, R.44
Rowland, D.J.45
Ryder, E.46
Samocha, K.E.47
Seavitt, J.R.48
Selloum, M.49
Szoke-Kovacs, Z.50
more..
-
13
-
-
0035963414
-
Protein dispensability and rate of evolution
-
Hirsh AE, Fraser HB. 2001. Protein dispensability and rate of evolution. Nature 411:1046-1049. https://doi.org/10.1038/35082561
-
(2001)
Nature
, vol.411
, pp. 1046-1049
-
-
Hirsh, A.E.1
Fraser, H.B.2
-
14
-
-
50949092459
-
Why do hubs in the yeast protein interaction network tend to be essential: reexamining the connection between the network topology and essentiality
-
Zotenko E, Mestre J, O'Leary DP, Przytycka TM. 2008. Why do hubs in the yeast protein interaction network tend to be essential: reexamining the connection between the network topology and essentiality. PLoS Comput Biol 4:e1000140. https://doi.org/10.1371/journal.pcbi.1000140
-
(2008)
PLoS Comput Biol
, vol.4
-
-
Zotenko, E.1
Mestre, J.2
O'Leary, D.P.3
Przytycka, T.M.4
-
15
-
-
84857321619
-
The majority of animal genes are required for wild-type fitness
-
Ramani AK, Chuluunbaatar T, Verster AJ, Na H, Vu V, Pelte N, Wannissorn N, Jiao A, Fraser AG. 2012. The majority of animal genes are required for wild-type fitness. Cell 148:792-802. https://doi.org/10.1016/j.cell.2012.01.019
-
(2012)
Cell
, vol.148
, pp. 792-802
-
-
Ramani, A.K.1
Chuluunbaatar, T.2
Verster, A.J.3
Na, H.4
Vu, V.5
Pelte, N.6
Wannissorn, N.7
Jiao, A.8
Fraser, A.G.9
-
16
-
-
84884286187
-
Revenge of the phages: defeating bacterial defences
-
Samson JE, Magadan AH, Sabri M, Moineau S. 2013. Revenge of the phages: defeating bacterial defences. Nat Rev Microbiol 11:675-687. https://doi.org/10.1038/nrmicro3096
-
(2013)
Nat Rev Microbiol
, vol.11
, pp. 675-687
-
-
Samson, J.E.1
Magadan, A.H.2
Sabri, M.3
Moineau, S.4
-
17
-
-
84865070369
-
A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
-
Jinek M, Chylinski K, Fonfara I, Hauer M, Doudna JA, Charpentier E. 2012. A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 337:816-821. https://doi.org/10.1126/science.1225829
-
(2012)
Science
, vol.337
, pp. 816-821
-
-
Jinek, M.1
Chylinski, K.2
Fonfara, I.3
Hauer, M.4
Doudna, J.A.5
Charpentier, E.6
-
18
-
-
84873729095
-
Multiplex genome engineering using CRISPR/Cas systems
-
Cong L, Ran FA, Cox D, Lin S, Barretto R, Habib N, Hsu PD, Wu X, Jiang W, Marraffini LA, Zhang F. 2013. Multiplex genome engineering using CRISPR/Cas systems. Science 339:819-823. https://doi.org/10.1126/science.1231143
-
(2013)
Science
, vol.339
, pp. 819-823
-
-
Cong, L.1
Ran, F.A.2
Cox, D.3
Lin, S.4
Barretto, R.5
Habib, N.6
Hsu, P.D.7
Wu, X.8
Jiang, W.9
Marraffini, L.A.10
Zhang, F.11
-
19
-
-
84928205754
-
High-throughput functional genomics using CRISPR-Cas9
-
Shalem O, Sanjana NE, Zhang F. 2015. High-throughput functional genomics using CRISPR-Cas9. Nat Rev Genet 16:299-311. https://doi.org/10.1038/nrg3899
-
(2015)
Nat Rev Genet
, vol.16
, pp. 299-311
-
-
Shalem, O.1
Sanjana, N.E.2
Zhang, F.3
-
20
-
-
84892765883
-
Genome-scale CRISPRCas9 knockout screening in human cells
-
Shalem O, Sanjana NE, Hartenian E, Shi X, Scott DA, Mikkelsen TS, Heckl D, Ebert BL, Root DE, Doench JG, Zhang F. 2014. Genome-scale CRISPRCas9 knockout screening in human cells. Science 343:84-87. https://doi.org/10.1126/science.1247005
-
(2014)
Science
, vol.343
, pp. 84-87
-
-
Shalem, O.1
Sanjana, N.E.2
Hartenian, E.3
Shi, X.4
Scott, D.A.5
Mikkelsen, T.S.6
Heckl, D.7
Ebert, B.L.8
Root, D.E.9
Doench, J.G.10
Zhang, F.11
-
21
-
-
84905262730
-
Improved vectors and genomewide libraries for CRISPR screening
-
Sanjana NE, Shalem O, Zhang F. 2014. Improved vectors and genomewide libraries for CRISPR screening. Nat Methods 11:783-784. https://doi.org/10.1038/nmeth.3047
-
(2014)
Nat Methods
, vol.11
, pp. 783-784
-
-
Sanjana, N.E.1
Shalem, O.2
Zhang, F.3
-
22
-
-
84947471999
-
Identification and characterization of essential genes in the human genome
-
Wang T, Birsoy K, Hughes NW, Krupczak KM, Post Y, Wei JJ, Lander ES, Sabatini DM. 2015. Identification and characterization of essential genes in the human genome. Science 350:1096-1101. https://doi.org/10.1126/science.aac7041
-
(2015)
Science
, vol.350
, pp. 1096-1101
-
-
Wang, T.1
Birsoy, K.2
Hughes, N.W.3
Krupczak, K.M.4
Post, Y.5
Wei, J.J.6
Lander, E.S.7
Sabatini, D.M.8
-
23
-
-
84949233942
-
High-resolution CRISPR screens reveal fitness genes and genotypespecific cancer liabilities
-
Hart T, Chandrashekhar M, Aregger M, Steinhart Z, Brown KR, MacLeod G, Mis M, Zimmermann M, Fradet-Turcotte A, Sun S, Mero P, Dirks P, Sidhu S, Roth FP, Rissland OS, Durocher D, Angers S, Moffat J. 2015. High-resolution CRISPR screens reveal fitness genes and genotypespecific cancer liabilities. Cell 163:1515-1526. https://doi.org/10.1016/j.cell.2015.11.015
-
(2015)
Cell
, vol.163
, pp. 1515-1526
-
-
Hart, T.1
Chandrashekhar, M.2
Aregger, M.3
Steinhart, Z.4
Brown, K.R.5
MacLeod, G.6
Mis, M.7
Zimmermann, M.8
Fradet-Turcotte, A.9
Sun, S.10
Mero, P.11
Dirks, P.12
Sidhu, S.13
Roth, F.P.14
Rissland, O.S.15
Durocher, D.16
Angers, S.17
Moffat, J.18
-
24
-
-
84947471998
-
Gene essentiality and synthetic lethality in haploid human cells
-
Blomen VA, Majek P, Jae LT, Bigenzahn JW, Nieuwenhuis J, Staring J, Sacco R, van Diemen FR, Olk N, Stukalov A, Marceau C, Janssen H, Carette JE, Bennett KL, Colinge J, Superti-Furga G, Brummelkamp TR. 2015 Gene essentiality and synthetic lethality in haploid human cells. Science 350:1092-1096. https://doi.org/10.1126/science.aac7557
-
(2015)
Science
, vol.350
, pp. 1092-1096
-
-
Blomen, V.A.1
Majek, P.2
Jae, L.T.3
Bigenzahn, J.W.4
Nieuwenhuis, J.5
Staring, J.6
Sacco, R.7
van Diemen, F.R.8
Olk, N.9
Stukalov, A.10
Marceau, C.11
Janssen, H.12
Carette, J.E.13
Bennett, K.L.14
Colinge, J.15
Superti-Furga, G.16
Brummelkamp, T.R.17
-
25
-
-
33748486517
-
AceView: a comprehensive cDNAsupported gene and transcripts annotation
-
Thierry-Mieg D, Thierry-Mieg J. 2006. AceView: a comprehensive cDNAsupported gene and transcripts annotation. Genome Biol 7(Suppl 1): S12.1-14. https://doi.org/10.1186/gb-2006-7-s1-s12
-
(2006)
Genome Biol
, vol.7
, pp. 1-14
-
-
Thierry-Mieg, D.1
Thierry-Mieg, J.2
-
26
-
-
84865760395
-
GENCODE: the reference human genome annotation for The ENCODE Project
-
Harrow J, Frankish A, Gonzalez JM, Tapanari E, Diekhans M, Kokocinski F, Aken BL, Barrell D, Zadissa A, Searle S, Barnes I, Bignell A, Boychenko V, Hunt T, Kay M, Mukherjee G, Rajan J, Despacio-Reyes G, Saunders G, Steward C, Harte R, Lin M, Howald C, Tanzer A, Derrien T, Chrast J, Walters N, Balasubramanian S, Pei B, Tress M, Rodriguez JM, Ezkurdia I, van Baren J, Brent M, Haussler D, Kellis M, Valencia A, Reymond A, Gerstein M, Guigo R, Hubbard TJ. 2012. GENCODE: the reference human genome annotation for The ENCODE Project. Genome Res 22: 1760-1774. https://doi.org/10.1101/gr.135350.111
-
(2012)
Genome Res
, vol.22
, pp. 1760-1774
-
-
Harrow, J.1
Frankish, A.2
Gonzalez, J.M.3
Tapanari, E.4
Diekhans, M.5
Kokocinski, F.6
Aken, B.L.7
Barrell, D.8
Zadissa, A.9
Searle, S.10
Barnes, I.11
Bignell, A.12
Boychenko, V.13
Hunt, T.14
Kay, M.15
Mukherjee, G.16
Rajan, J.17
Despacio-Reyes, G.18
Saunders, G.19
Steward, C.20
Harte, R.21
Lin, M.22
Howald, C.23
Tanzer, A.24
Derrien, T.25
Chrast, J.26
Walters, N.27
Balasubramanian, S.28
Pei, B.29
Tress, M.30
Rodriguez, J.M.31
Ezkurdia, I.32
van Baren, J.33
Brent, M.34
Haussler, D.35
Kellis, M.36
Valencia, A.37
Reymond, A.38
Gerstein, M.39
Guigo, R.40
Hubbard, T.J.41
more..
-
27
-
-
0018408021
-
Characterization of a leukemic cell line of the pre-B phenotype
-
Hurwitz R, Hozier J, LeBien T, Minowada J, Gajl-Peczalska K, Kubonishi I, Kersey J. 1979. Characterization of a leukemic cell line of the pre-B phenotype. Int J Cancer 23:174-180. https://doi.org/10.1002/ijc.2910230206
-
(1979)
Int J Cancer
, vol.23
, pp. 174-180
-
-
Hurwitz, R.1
Hozier, J.2
LeBien, T.3
Minowada, J.4
Gajl-Peczalska, K.5
Kubonishi, I.6
Kersey, J.7
-
28
-
-
84996567029
-
MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens
-
Li W, Xu H, Xiao T, Cong L, Love MI, Zhang F, Irizarry RA, Liu JS, Brown M, Liu XS. 2014. MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens. Genome Biol 15:554. https://doi.org/10.1186/s13059-014-0554-4
-
(2014)
Genome Biol
, vol.15
, pp. 554
-
-
Li, W.1
Xu, H.2
Xiao, T.3
Cong, L.4
Love, M.I.5
Zhang, F.6
Irizarry, R.A.7
Liu, J.S.8
Brown, M.9
Liu, X.S.10
-
29
-
-
1542748076
-
Aligning multiple genomic sequences with the threaded blockset aligner
-
Blanchette M, Kent WJ, Riemer C, Elnitski L, Smit AF, Roskin KM, Baertsch R, Rosenbloom K, Clawson H, Green ED, Haussler D, Miller W. 2004. Aligning multiple genomic sequences with the threaded blockset aligner. Genome Res 14:708-715. https://doi.org/10.1101/gr.1933104
-
(2004)
Genome Res
, vol.14
, pp. 708-715
-
-
Blanchette, M.1
Kent, W.J.2
Riemer, C.3
Elnitski, L.4
Smit, A.F.5
Roskin, K.M.6
Baertsch, R.7
Rosenbloom, K.8
Clawson, H.9
Green, E.D.10
Haussler, D.11
Miller, W.12
-
30
-
-
84941145210
-
The BioGRID interaction database: 2015 update
-
Chatr-Aryamontri A, Breitkreutz BJ, Oughtred R, Boucher L, Heinicke S, Chen D, Stark C, Breitkreutz A, Kolas N, O'Donnell L, Reguly T, Nixon J, Ramage L, Winter A, Sellam A, Chang C, Hirschman J, Theesfeld C, Rust J, Livstone MS, Dolinski K, Tyers M. 2015. The BioGRID interaction database: 2015 update. Nucleic Acids Res 43:D470-D478. https://doi.org/10.1093/nar/gku1204
-
(2015)
Nucleic Acids Res
, vol.43
, pp. D470-D478
-
-
Chatr-Aryamontri, A.1
Breitkreutz, B.J.2
Oughtred, R.3
Boucher, L.4
Heinicke, S.5
Chen, D.6
Stark, C.7
Breitkreutz, A.8
Kolas, N.9
O'Donnell, L.10
Reguly, T.11
Nixon, J.12
Ramage, L.13
Winter, A.14
Sellam, A.15
Chang, C.16
Hirschman, J.17
Theesfeld, C.18
Rust, J.19
Livstone, M.S.20
Dolinski, K.21
Tyers, M.22
more..
-
31
-
-
84940501210
-
Unraveling CRISPRCas9 genome engineering parameters via a library-on-library approach
-
Chari R, Mali P, Moosburner M, Church GM. 2015. Unraveling CRISPRCas9 genome engineering parameters via a library-on-library approach. Nat Methods 12:823-826. https://doi.org/10.1038/nmeth.3473
-
(2015)
Nat Methods
, vol.12
, pp. 823-826
-
-
Chari, R.1
Mali, P.2
Moosburner, M.3
Church, G.M.4
-
32
-
-
84982918709
-
Genomic copy number dictates a gene-independent cell response to CRISPR-Cas9 targeting
-
Aguirre AJ, Meyers RM, Weir BA, Vazquez F, Zhang CZ, Ben-David U, Cook A, Ha G, Harrington WF, Doshi MB, Kost-Alimova M, Gill S, Xu H, Ali LD, Jiang G, Pantel S, Lee Y, Goodale A, Cherniack AD, Oh C, Kryukov G, Cowley GS, Garraway LA, Stegmaier K, Roberts CW, Golub TR, Meyerson M, Root DE, Tsherniak A, Hahn WC. 2016. Genomic copy number dictates a gene-independent cell response to CRISPR-Cas9 targeting. Cancer Discov 6:914-929. https://doi.org/10.1158/2159-8290.CD-16-0154
-
(2016)
Cancer Discov
, vol.6
, pp. 914-929
-
-
Aguirre, A.J.1
Meyers, R.M.2
Weir, B.A.3
Vazquez, F.4
Zhang, C.Z.5
Ben-David, U.6
Cook, A.7
Ha, G.8
Harrington, W.F.9
Doshi, M.B.10
Kost-Alimova, M.11
Gill, S.12
Xu, H.13
Ali, L.D.14
Jiang, G.15
Pantel, S.16
Lee, Y.17
Goodale, A.18
Cherniack, A.D.19
Oh, C.20
Kryukov, G.21
Cowley, G.S.22
Garraway, L.A.23
Stegmaier, K.24
Roberts, C.W.25
Golub, T.R.26
Meyerson, M.27
Root, D.E.28
Tsherniak, A.29
Hahn, W.C.30
more..
-
33
-
-
84982913128
-
CRISPR screens provide a comprehensive assessment of cancer vulnerabilities but generate false-positive hits for highly amplified genomic regions
-
Munoz DM, Cassiani PJ, Li L, Billy E, Korn JM, Jones MD, Golji J, Ruddy DA, Yu K, McAllister G, DeWeck A, Abramowski D, Wan J, Shirley MD, Neshat SY, Rakiec D, de Beaumont R, Weber O, Kauffmann A, McDonald ER 3rd, Keen N, Hofmann F, Sellers WR, Schmelzle T, Stegmeier F, Schlabach MR. 2016 CRISPR screens provide a comprehensive assessment of cancer vulnerabilities but generate false-positive hits for highly amplified genomic regions. Cancer Discov 6:900-913. https://doi.org/10.1158/2159-8290.CD-16-0178
-
(2016)
Cancer Discov
, vol.6
, pp. 900-913
-
-
Munoz, D.M.1
Cassiani, P.J.2
Li, L.3
Billy, E.4
Korn, J.M.5
Jones, M.D.6
Golji, J.7
Ruddy, D.A.8
Yu, K.9
McAllister, G.10
DeWeck, A.11
Abramowski, D.12
Wan, J.13
Shirley, M.D.14
Neshat, S.Y.15
Rakiec, D.16
de Beaumont, R.17
Weber, O.18
Kauffmann, A.19
McDonald, E.R.20
Keen, N.21
Hofmann, F.22
Sellers, W.R.23
Schmelzle, T.24
Stegmeier, F.25
Schlabach, M.R.26
more..
-
34
-
-
84994850910
-
A CRISPR dropout screen identifies genetic vulnerabilities and therapeutic targets in acute myeloid leukemia
-
Tzelepis K, Koike-Yusa H, De Braekeleer E, Li Y, Metzakopian E, Dovey OM, Mupo A, Grinkevich V, Li M, Mazan M, Gozdecka M, Ohnishi S, Cooper J, Patel M, McKerrell T, Chen B, Domingues AF, Gallipoli P, Teichmann S, Ponstingl H, McDermott U, Saez-Rodriguez J, Huntly BJ, Iorio F, Pina C, Vassiliou GS, Yusa K. 2016. A CRISPR dropout screen identifies genetic vulnerabilities and therapeutic targets in acute myeloid leukemia. Cell Rep 17:1193-1205. https://doi.org/10.1016/j.celrep.2016.09.079
-
(2016)
Cell Rep
, vol.17
, pp. 1193-1205
-
-
Tzelepis, K.1
Koike-Yusa, H.2
De Braekeleer, E.3
Li, Y.4
Metzakopian, E.5
Dovey, O.M.6
Mupo, A.7
Grinkevich, V.8
Li, M.9
Mazan, M.10
Gozdecka, M.11
Ohnishi, S.12
Cooper, J.13
Patel, M.14
McKerrell, T.15
Chen, B.16
Domingues, A.F.17
Gallipoli, P.18
Teichmann, S.19
Ponstingl, H.20
McDermott, U.21
Saez-Rodriguez, J.22
Huntly, B.J.23
Iorio, F.24
Pina, C.25
Vassiliou, G.S.26
Yusa, K.27
more..
-
35
-
-
84976897928
-
Database resources of the National Center for Biotechnology Information
-
NCBI Resource Coordinators. 2016. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 44:D7-D19. https://doi.org/10.1093/nar/gkv1290
-
(2016)
Nucleic Acids Res
, vol.44
, pp. D7-D19
-
-
-
36
-
-
34547787599
-
A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality
-
Hart GT, Lee I, Marcotte ER. 2007. A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality. BMC Bioinformatics 8:236. https://doi.org/10.1186/1471-2105-8-236
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 236
-
-
Hart, G.T.1
Lee, I.2
Marcotte, E.R.3
-
37
-
-
84946045336
-
The RCSB Protein Data Bank: views of structural biology for basic and applied research and education
-
Rose PW, Prlic A, Bi C, Bluhm WF, Christie CH, Dutta S, Green RK, Goodsell DS, Westbrook JD, Woo J, Young J, Zardecki C, Berman HM, Bourne PE, Burley SK. 2015. The RCSB Protein Data Bank: views of structural biology for basic and applied research and education. Nucleic Acids Res 43: D345-D356. https://doi.org/10.1093/nar/gku1214
-
(2015)
Nucleic Acids Res
, vol.43
, pp. D345-D356
-
-
Rose, P.W.1
Prlic, A.2
Bi, C.3
Bluhm, W.F.4
Christie, C.H.5
Dutta, S.6
Green, R.K.7
Goodsell, D.S.8
Westbrook, J.D.9
Woo, J.10
Young, J.11
Zardecki, C.12
Berman, H.M.13
Bourne, P.E.14
Burley, S.K.15
-
38
-
-
85014030083
-
Proteomic analysis of the human KEOPS complex identifies C14ORF142 as a core subunit homologous to yeast Gon7
-
Wan LC, Maisonneuve P, Szilard RK, Lambert JP, Ng TF, Manczyk N, Huang H, Laister R, Caudy AA, Gingras AC, Durocher D, Sicheri F. 2016. Proteomic analysis of the human KEOPS complex identifies C14ORF142 as a core subunit homologous to yeast Gon7. Nucleic Acids Res. https://doi.org/10.1093/nar/gkw1181
-
(2016)
Nucleic Acids Res
-
-
Wan, L.C.1
Maisonneuve, P.2
Szilard, R.K.3
Lambert, J.P.4
Ng, T.F.5
Manczyk, N.6
Huang, H.7
Laister, R.8
Caudy, A.A.9
Gingras, A.C.10
Durocher, D.11
Sicheri, F.12
-
39
-
-
25144498379
-
A human protein-protein interaction network: a resource for annotating the proteome
-
Stelzl U, Worm U, Lalowski M, Haenig C, Brembeck FH, Goehler H, Stroedicke M, Zenkner M, Schoenherr A, Koeppen S, Timm J, Mintzlaff S, Abraham C, Bock N, Kietzmann S, Goedde A, Toksoz E, Droege A, Krobitsch S, Korn B, Birchmeier W, Lehrach H, Wanker EE. 2005. A human protein-protein interaction network: a resource for annotating the proteome. Cell 122:957-968. https://doi.org/10.1016/j.cell.2005.08.029
-
(2005)
Cell
, vol.122
, pp. 957-968
-
-
Stelzl, U.1
Worm, U.2
Lalowski, M.3
Haenig, C.4
Brembeck, F.H.5
Goehler, H.6
Stroedicke, M.7
Zenkner, M.8
Schoenherr, A.9
Koeppen, S.10
Timm, J.11
Mintzlaff, S.12
Abraham, C.13
Bock, N.14
Kietzmann, S.15
Goedde, A.16
Toksoz, E.17
Droege, A.18
Krobitsch, S.19
Korn, B.20
Birchmeier, W.21
Lehrach, H.22
Wanker, E.E.23
more..
-
40
-
-
3843084078
-
The COSMIC (Catalogue of Somatic Mutations in Cancer) database and website
-
Bamford S, Dawson E, Forbes S, Clements J, Pettett R, Dogan A, Flanagan A, Teague J, Futreal PA, Stratton MR, Wooster R. 2004. The COSMIC (Catalogue of Somatic Mutations in Cancer) database and website. Br J Cancer 91:355-358
-
(2004)
Br J Cancer
, vol.91
, pp. 355-358
-
-
Bamford, S.1
Dawson, E.2
Forbes, S.3
Clements, J.4
Pettett, R.5
Dogan, A.6
Flanagan, A.7
Teague, J.8
Futreal, P.A.9
Stratton, M.R.10
Wooster, R.11
-
41
-
-
61849150985
-
High-throughput sequencing screen reveals novel, transforming RAS mutations in myeloid leukemia patients
-
Tyner JW, Erickson H, Deininger MW, Willis SG, Eide CA, Levine RL, Heinrich MC, Gattermann N, Gilliland DG, Druker BJ, Loriaux MM. 2009. High-throughput sequencing screen reveals novel, transforming RAS mutations in myeloid leukemia patients. Blood 113:1749-1755. https://doi.org/10.1182/blood-2008-04-152157
-
(2009)
Blood
, vol.113
, pp. 1749-1755
-
-
Tyner, J.W.1
Erickson, H.2
Deininger, M.W.3
Willis, S.G.4
Eide, C.A.5
Levine, R.L.6
Heinrich, M.C.7
Gattermann, N.8
Gilliland, D.G.9
Druker, B.J.10
Loriaux, M.M.11
-
42
-
-
84865220978
-
Cytochrome c oxidase is activated by the oncoprotein Ras and is required for A549 lung adenocarcinoma growth
-
Telang S, Nelson KK, Siow DL, Yalcin A, Thornburg JM, Imbert-Fernandez Y, Klarer AC, Farghaly H, Clem BF, Eaton JW, Chesney J. 2012. Cytochrome c oxidase is activated by the oncoprotein Ras and is required for A549 lung adenocarcinoma growth. Mol Cancer 11:60. https://doi.org/10.1186/1476-4598-11-60
-
(2012)
Mol Cancer
, vol.11
, pp. 60
-
-
Telang, S.1
Nelson, K.K.2
Siow, D.L.3
Yalcin, A.4
Thornburg, J.M.5
Imbert-Fernandez, Y.6
Klarer, A.C.7
Farghaly, H.8
Clem, B.F.9
Eaton, J.W.10
Chesney, J.11
-
43
-
-
84937786788
-
Transcription factor networks in B-cell differentiation link development to acute lymphoid leukemia
-
Somasundaram R, Prasad MA, Ungerback J, Sigvardsson M. 2015. Transcription factor networks in B-cell differentiation link development to acute lymphoid leukemia. Blood 126:144-152. https://doi.org/10.1182/blood-2014-12-575688
-
(2015)
Blood
, vol.126
, pp. 144-152
-
-
Somasundaram, R.1
Prasad, M.A.2
Ungerback, J.3
Sigvardsson, M.4
-
44
-
-
84979523678
-
Unconventional neurotrophic factors CDNF and MANF: Structure, physiological functions and therapeutic potential
-
Lindahl M, Saarma M, Lindholm P. 2017. Unconventional neurotrophic factors CDNF and MANF: Structure, physiological functions and therapeutic potential. Neurobiol Dis 97:90-102. https://doi.org/10.1016/j.nbd.2016.07.009
-
(2017)
Neurobiol Dis
, vol.97
, pp. 90-102
-
-
Lindahl, M.1
Saarma, M.2
Lindholm, P.3
-
45
-
-
84976907471
-
Immune modulation by MANF promotes tissue repair and regenerative success in the retina
-
Neves J, Zhu J, Sousa-Victor P, Konjikusic M, Riley R, Chew S, Qi Y, Jasper H, Lamba DA. 2016. Immune modulation by MANF promotes tissue repair and regenerative success in the retina. Science 353:aaf3646. https://doi.org/10.1126/science.aaf3646
-
(2016)
Science
, vol.353
-
-
Neves, J.1
Zhu, J.2
Sousa-Victor, P.3
Konjikusic, M.4
Riley, R.5
Chew, S.6
Qi, Y.7
Jasper, H.8
Lamba, D.A.9
-
46
-
-
84883404388
-
Cytochromes b561: ascorbate-mediated trans-membrane electron transport
-
Asard H, Barbaro R, Trost P, Berczi A. 2013. Cytochromes b561: ascorbate-mediated trans-membrane electron transport. Antioxid Redox Signal 19:1026-1035. https://doi.org/10.1089/ars.2012.5065
-
(2013)
Antioxid Redox Signal
, vol.19
, pp. 1026-1035
-
-
Asard, H.1
Barbaro, R.2
Trost, P.3
Berczi, A.4
-
47
-
-
78651275182
-
Reactome: a database of reactions, pathways and biological processes
-
Croft D, O'Kelly G, Wu G, Haw R, Gillespie M, Matthews L, Caudy M, Garapati P, Gopinath G, Jassal B, Jupe S, Kalatskaya I, Mahajan S, May B, Ndegwa N, Schmidt E, Shamovsky V, Yung C, Birney E, Hermjakob H, D'Eustachio P, Stein L. 2011. Reactome: a database of reactions, pathways and biological processes. Nucleic Acids Res 39:D691-D697. https://doi.org/10.1093/nar/gkq1018
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D691-D697
-
-
Croft, D.1
O'Kelly, G.2
Wu, G.3
Haw, R.4
Gillespie, M.5
Matthews, L.6
Caudy, M.7
Garapati, P.8
Gopinath, G.9
Jassal, B.10
Jupe, S.11
Kalatskaya, I.12
Mahajan, S.13
May, B.14
Ndegwa, N.15
Schmidt, E.16
Shamovsky, V.17
Yung, C.18
Birney, E.19
Hermjakob, H.20
D'Eustachio, P.21
Stein, L.22
more..
-
48
-
-
84923407069
-
B-cell receptor signalling and its crosstalk with other pathways in normal and malignant cells
-
Seda V, Mraz M. 2015. B-cell receptor signalling and its crosstalk with other pathways in normal and malignant cells. Eur J Haematol 94: 193-205. https://doi.org/10.1111/ejh.12427
-
(2015)
Eur J Haematol
, vol.94
, pp. 193-205
-
-
Seda, V.1
Mraz, M.2
-
49
-
-
84930939029
-
Discovery of cancer drug targets by CRISPR-Cas9 screening of protein domains
-
Shi J, Wang E, Milazzo JP, Wang Z, Kinney JB, Vakoc CR. 2015. Discovery of cancer drug targets by CRISPR-Cas9 screening of protein domains. Nat Biotechnol 33:661-667. https://doi.org/10.1038/nbt.3235
-
(2015)
Nat Biotechnol
, vol.33
, pp. 661-667
-
-
Shi, J.1
Wang, E.2
Milazzo, J.P.3
Wang, Z.4
Kinney, J.B.5
Vakoc, C.R.6
-
50
-
-
84973558179
-
Genomewide functional annotation of human protein-coding splice variants using multiple instance learning
-
Panwar B, Menon R, Eksi R, Li HD, Omenn GS, Guan Y. 2016. Genomewide functional annotation of human protein-coding splice variants using multiple instance learning. J Proteome Res 15:1747-1753. https://doi.org/10.1021/acs.jproteome.5b00883
-
(2016)
J Proteome Res
, vol.15
, pp. 1747-1753
-
-
Panwar, B.1
Menon, R.2
Eksi, R.3
Li, H.D.4
Omenn, G.S.5
Guan, Y.6
-
51
-
-
84933038158
-
Atomic structure of the APC/C and its mechanism of protein ubiquitination
-
Chang L, Zhang Z, Yang J, McLaughlin SH, Barford D. 2015. Atomic structure of the APC/C and its mechanism of protein ubiquitination. Nature 522:450-454. https://doi.org/10.1038/nature14471
-
(2015)
Nature
, vol.522
, pp. 450-454
-
-
Chang, L.1
Zhang, Z.2
Yang, J.3
McLaughlin, S.H.4
Barford, D.5
-
52
-
-
84879255556
-
IGHV1-69-encoded antibodies expressed in chronic lymphocytic leukemia react with malondialdehyde-acetaldehyde adduct, an immunodominant oxidationspecific epitope
-
Que X, Widhopf GF, II, Amir S, Hartvigsen K, Hansen LF, Woelkers D, Tsimikas S, Binder CJ, Kipps TJ, Witztum JL. 2013. IGHV1-69-encoded antibodies expressed in chronic lymphocytic leukemia react with malondialdehyde-acetaldehyde adduct, an immunodominant oxidationspecific epitope. PLoS One 8:e65203. https://doi.org/10.1371/journal.pone.0065203
-
(2013)
PLoS One
, vol.8
-
-
Que, X.1
Widhopf, G.F.2
Amir, S.3
Hartvigsen, K.4
Hansen, L.F.5
Woelkers, D.6
Tsimikas, S.7
Binder, C.J.8
Kipps, T.J.9
Witztum, J.L.10
-
53
-
-
84901611036
-
Mass-spectrometry-based draft of the human proteome
-
Wilhelm M, Schlegl J, Hahne H, Gholami AM, Lieberenz M, Savitski MM, Ziegler E, Butzmann L, Gessulat S, Marx H, Mathieson T, Lemeer S, Schnatbaum K, Reimer U, Wenschuh H, Mollenhauer M, Slotta-Huspenina J, Boese JH, Bantscheff M, Gerstmair A, Faerber F, Kuster B. 2014 Mass-spectrometry-based draft of the human proteome. Nature 509:582-587. https://doi.org/10.1038/nature13319
-
(2014)
Nature
, vol.509
, pp. 582-587
-
-
Wilhelm, M.1
Schlegl, J.2
Hahne, H.3
Gholami, A.M.4
Lieberenz, M.5
Savitski, M.M.6
Ziegler, E.7
Butzmann, L.8
Gessulat, S.9
Marx, H.10
Mathieson, T.11
Lemeer, S.12
Schnatbaum, K.13
Reimer, U.14
Wenschuh, H.15
Mollenhauer, M.16
Slotta-Huspenina, J.17
Boese, J.H.18
Bantscheff, M.19
Gerstmair, A.20
Faerber, F.21
Kuster, B.22
more..
-
54
-
-
84963893825
-
Improved identification and analysis of small open reading frame encoded polypeptides
-
Ma J, Diedrich JK, Jungreis I, Donaldson C, Vaughan J, Kellis M, Yates JR 3rd, Saghatelian A. 2016. Improved identification and analysis of small open reading frame encoded polypeptides. Anal Chem 88:3967-3975. https://doi.org/10.1021/acs.analchem.6b00191
-
(2016)
Anal Chem
, vol.88
, pp. 3967-3975
-
-
Ma, J.1
Diedrich, J.K.2
Jungreis, I.3
Donaldson, C.4
Vaughan, J.5
Kellis, M.6
Yates, J.R.7
Saghatelian, A.8
-
55
-
-
77951530523
-
Genotype to phenotype: a complex problem
-
Dowell RD, Ryan O, Jansen A, Cheung D, Agarwala S, Danford T, Bernstein DA, Rolfe PA, Heisler LE, Chin B, Nislow C, Giaever G, Phillips PC, Fink GR, Gifford DK, Boone C. 2010. Genotype to phenotype: a complex problem. Science 328:469. https://doi.org/10.1126/science.1189015
-
(2010)
Science
, vol.328
, pp. 469
-
-
Dowell, R.D.1
Ryan, O.2
Jansen, A.3
Cheung, D.4
Agarwala, S.5
Danford, T.6
Bernstein, D.A.7
Rolfe, P.A.8
Heisler, L.E.9
Chin, B.10
Nislow, C.11
Giaever, G.12
Phillips, P.C.13
Fink, G.R.14
Gifford, D.K.15
Boone, C.16
-
56
-
-
0035799707
-
Lethality and centrality in protein networks
-
Jeong H, Mason SP, Barabasi AL, Oltvai ZN. 2001. Lethality and centrality in protein networks. Nature 411:41-42. https://doi.org/10.1038/35075138
-
(2001)
Nature
, vol.411
, pp. 41-42
-
-
Jeong, H.1
Mason, S.P.2
Barabasi, A.L.3
Oltvai, Z.N.4
-
57
-
-
84891620973
-
All or nothing: protein complexes flip essentiality between distantly related eukaryotes
-
Ryan CJ, Krogan NJ, Cunningham P, Cagney G. 2013. All or nothing: protein complexes flip essentiality between distantly related eukaryotes. Genome Biol Evol 5:1049-1059. https://doi.org/10.1093/gbe/evt074
-
(2013)
Genome Biol Evol
, vol.5
, pp. 1049-1059
-
-
Ryan, C.J.1
Krogan, N.J.2
Cunningham, P.3
Cagney, G.4
-
58
-
-
33845875196
-
Relating three-dimensional structures to protein networks provides evolutionary insights
-
Kim PM, Lu LJ, Xia Y, Gerstein MB. 2006. Relating three-dimensional structures to protein networks provides evolutionary insights. Science 314:1938-1941. https://doi.org/10.1126/science.1136174
-
(2006)
Science
, vol.314
, pp. 1938-1941
-
-
Kim, P.M.1
Lu, L.J.2
Xia, Y.3
Gerstein, M.B.4
-
59
-
-
0037177560
-
Evolutionary rate in the protein interaction network
-
Fraser HB, Hirsh AE, Steinmetz LM, Scharfe C, Feldman MW. 2002. Evolutionary rate in the protein interaction network. Science 296: 750-752. https://doi.org/10.1126/science.1068696
-
(2002)
Science
, vol.296
, pp. 750-752
-
-
Fraser, H.B.1
Hirsh, A.E.2
Steinmetz, L.M.3
Scharfe, C.4
Feldman, M.W.5
-
60
-
-
85008603826
-
Network centrality analysis in fungi reveals complex regulation of lost and gained genes
-
Coulombe-Huntington J, Xia Y. 2017. Network centrality analysis in fungi reveals complex regulation of lost and gained genes. PLoS One 12: e0169459. https://doi.org/10.1371/journal.pone.0169459
-
(2017)
PLoS One
, vol.12
-
-
Coulombe-Huntington, J.1
Xia, Y.2
-
61
-
-
84964851641
-
From one to many: expanding the Saccharomyces cerevisiae reference genome panel
-
(Oxford)
-
Engel SR, Weng S, Binkley G, Paskov K, Song G, Cherry JM. 2016. From one to many: expanding the Saccharomyces cerevisiae reference genome panel. Database (Oxford). https://doi.org/10.1093/database/baw020
-
(2016)
Database
-
-
Engel, S.R.1
Weng, S.2
Binkley, G.3
Paskov, K.4
Song, G.5
Cherry, J.M.6
-
62
-
-
84923310248
-
Mitochondrial defects trigger proliferation of neighbouring cells via a senescence-associated secretory phenotype in Drosophila
-
Nakamura M, Ohsawa S, Igaki T. 2014. Mitochondrial defects trigger proliferation of neighbouring cells via a senescence-associated secretory phenotype in Drosophila. Nat Commun 5:5264. https://doi.org/10.1038/ncomms6264
-
(2014)
Nat Commun
, vol.5
, pp. 5264
-
-
Nakamura, M.1
Ohsawa, S.2
Igaki, T.3
-
63
-
-
0030667434
-
Integrating genetic approaches into the discovery of anticancer drugs
-
Hartwell LH, Szankasi P, Roberts CJ, Murray AW, Friend SH. 1997. Integrating genetic approaches into the discovery of anticancer drugs. Science 278:1064-1068. https://doi.org/10.1126/science.278.5340.1064
-
(1997)
Science
, vol.278
, pp. 1064-1068
-
-
Hartwell, L.H.1
Szankasi, P.2
Roberts, C.J.3
Murray, A.W.4
Friend, S.H.5
-
64
-
-
84871410405
-
The evolutionary landscape of alternative splicing in vertebrate species
-
Barbosa-Morais NL, Irimia M, Pan Q, Xiong HY, Gueroussov S, Lee LJ, Slobodeniuc V, Kutter C, Watt S, Colak R, Kim T, Misquitta-Ali CM, Wilson MD, Kim PM, Odom DT, Frey BJ, Blencowe BJ. 2012. The evolutionary landscape of alternative splicing in vertebrate species. Science 338: 1587-1593. https://doi.org/10.1126/science.1230612
-
(2012)
Science
, vol.338
, pp. 1587-1593
-
-
Barbosa-Morais, N.L.1
Irimia, M.2
Pan, Q.3
Xiong, H.Y.4
Gueroussov, S.5
Lee, L.J.6
Slobodeniuc, V.7
Kutter, C.8
Watt, S.9
Colak, R.10
Kim, T.11
Misquitta-Ali, C.M.12
Wilson, M.D.13
Kim, P.M.14
Odom, D.T.15
Frey, B.J.16
Blencowe, B.J.17
-
65
-
-
84863874006
-
Molecular cloning of novel alternatively spliced variants of BCL2L12, a new member of the BCL2 gene family, and their expression analysis in cancer cells
-
Kontos CK, Scorilas A. 2012. Molecular cloning of novel alternatively spliced variants of BCL2L12, a new member of the BCL2 gene family, and their expression analysis in cancer cells. Gene 505:153-166. https://doi.org/10.1016/j.gene.2012.04.084
-
(2012)
Gene
, vol.505
, pp. 153-166
-
-
Kontos, C.K.1
Scorilas, A.2
-
66
-
-
84863003268
-
Tissue-specific alternative splicing remodels protein-protein interaction networks
-
Ellis JD, Barrios-Rodiles M, Colak R, Irimia M, Kim T, Calarco JA, Wang X, Pan Q, O'Hanlon D, Kim PM, Wrana JL, Blencowe BJ. 2012. Tissue-specific alternative splicing remodels protein-protein interaction networks. Mol Cell 46:884-892. https://doi.org/10.1016/j.molcel.2012.05.037
-
(2012)
Mol Cell
, vol.46
, pp. 884-892
-
-
Ellis, J.D.1
Barrios-Rodiles, M.2
Colak, R.3
Irimia, M.4
Kim, T.5
Calarco, J.A.6
Wang, X.7
Pan, Q.8
O'Hanlon, D.9
Kim, P.M.10
Wrana, J.L.11
Blencowe, B.J.12
-
67
-
-
84958182784
-
Widespread expansion of protein interaction capabilities by alternative splicing
-
Yang X, Coulombe-Huntington J, Kang S, Sheynkman GM, Hao T, Richardson A, Sun S, Yang F, Shen YA, Murray RR, Spirohn K, Begg BE, Duran-Frigola M, MacWilliams A, Pevzner SJ, Zhong Q, Trigg SA, Tam S, Ghamsari L, Sahni N, Yi S, Rodriguez MD, Balcha D, Tan G, Costanzo M, Andrews B, Boone C, Zhou XJ, Salehi-Ashtiani K, Charloteaux B, Chen AA, Calderwood MA, Aloy P, Roth FP, Hill DE, Iakoucheva LM, Xia Y, Vidal M. 2016 Widespread expansion of protein interaction capabilities by alternative splicing. Cell 164:805-817. https://doi.org/10.1016/j.cell.2016.01.029
-
(2016)
Cell
, vol.164
, pp. 805-817
-
-
Yang, X.1
Coulombe-Huntington, J.2
Kang, S.3
Sheynkman, G.M.4
Hao, T.5
Richardson, A.6
Sun, S.7
Yang, F.8
Shen, Y.A.9
Murray, R.R.10
Spirohn, K.11
Begg, B.E.12
Duran-Frigola, M.13
MacWilliams, A.14
Pevzner, S.J.15
Zhong, Q.16
Trigg, S.A.17
Tam, S.18
Ghamsari, L.19
Sahni, N.20
Yi, S.21
Rodriguez, M.D.22
Balcha, D.23
Tan, G.24
Costanzo, M.25
Andrews, B.26
Boone, C.27
Zhou, X.J.28
Salehi-Ashtiani, K.29
Charloteaux, B.30
Chen, A.A.31
Calderwood, M.A.32
Aloy, P.33
Roth, F.P.34
Hill, D.E.35
Iakoucheva, L.M.36
Xia, Y.37
Vidal, M.38
more..
-
69
-
-
78149404797
-
Chromosomal redistribution of male-biased genes in mammalian evolution with two bursts of gene gain on the X chromosome
-
Zhang YE, Vibranovski MD, Landback P, Marais GA, Long M. 2010. Chromosomal redistribution of male-biased genes in mammalian evolution with two bursts of gene gain on the X chromosome. PLoS Biol 8:e1000494. https://doi.org/10.1371/journal.pbio.1000494
-
(2010)
PLoS Biol
, vol.8
-
-
Zhang, Y.E.1
Vibranovski, M.D.2
Landback, P.3
Marais, G.A.4
Long, M.5
-
70
-
-
84863988094
-
Proto-genes and de novo gene birth
-
Carvunis AR, Rolland T, Wapinski I, Calderwood MA, Yildirim MA, Simonis N, Charloteaux B, Hidalgo CA, Barbette J, Santhanam B, Brar GA, Weissman JS, Regev A, Thierry-Mieg N, Cusick ME, Vidal M. 2012. Proto-genes and de novo gene birth. Nature 487:370-374. https://doi.org/10.1038/nature11184
-
(2012)
Nature
, vol.487
, pp. 370-374
-
-
Carvunis, A.R.1
Rolland, T.2
Wapinski, I.3
Calderwood, M.A.4
Yildirim, M.A.5
Simonis, N.6
Charloteaux, B.7
Hidalgo, C.A.8
Barbette, J.9
Santhanam, B.10
Brar, G.A.11
Weissman, J.S.12
Regev, A.13
Thierry-Mieg, N.14
Cusick, M.E.15
Vidal, M.16
-
71
-
-
78650385315
-
New genes in Drosophila quickly become essential
-
Chen S, Zhang YE, Long M. 2010. New genes in Drosophila quickly become essential. Science 330:1682-1685. https://doi.org/10.1126/science.1196380
-
(2010)
Science
, vol.330
, pp. 1682-1685
-
-
Chen, S.1
Zhang, Y.E.2
Long, M.3
-
72
-
-
84949058387
-
Devising a consensus framework for validation of novel human coding loci
-
Bruford EA, Lane L, Harrow J. 2015. Devising a consensus framework for validation of novel human coding loci. J Proteome Res 14:4945-4948. https://doi.org/10.1021/acs.jproteome.5b00688
-
(2015)
J Proteome Res
, vol.14
, pp. 4945-4948
-
-
Bruford, E.A.1
Lane, L.2
Harrow, J.3
-
73
-
-
84979608157
-
CRISPR screens to discover functional noncoding elements
-
Wright JB, Sanjana NE. 2016. CRISPR screens to discover functional noncoding elements. Trends Genet 32:526-529. https://doi.org/10.1016/j.tig.2016.06.004
-
(2016)
Trends Genet
, vol.32
, pp. 526-529
-
-
Wright, J.B.1
Sanjana, N.E.2
-
74
-
-
84892749369
-
Genetic screens in human cells using the CRISPR-Cas9 system
-
Wang T, Wei JJ, Sabatini DM, Lander ES. 2014. Genetic screens in human cells using the CRISPR-Cas9 system. Science 343:80-84. https://doi.org/10.1126/science.1246981
-
(2014)
Science
, vol.343
, pp. 80-84
-
-
Wang, T.1
Wei, J.J.2
Sabatini, D.M.3
Lander, E.S.4
-
75
-
-
0001677717
-
Controlling the false discovery rate: a practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y. 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Ser B 57:289-300
-
(1995)
J R Stat Soc Ser B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
76
-
-
24044538903
-
IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content
-
Dosztanyi Z, Csizmok V, Tompa P, Simon I. 2005. IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content. Bioinformatics 21:3433-3434. https://doi.org/10.1093/bioinformatics/bti541
-
(2005)
Bioinformatics
, vol.21
, pp. 3433-3434
-
-
Dosztanyi, Z.1
Csizmok, V.2
Tompa, P.3
Simon, I.4
-
77
-
-
75549091794
-
CORUM: the comprehensive resource of mammalian protein complexes-2009
-
Ruepp A, Waegele B, Lechner M, Brauner B, Dunger-Kaltenbach I, Fobo G, Frishman G, Montrone C, Mewes HW. 2010. CORUM: the comprehensive resource of mammalian protein complexes-2009. Nucleic Acids Res 38:D497-D501. https://doi.org/10.1093/nar/gkp914
-
(2010)
Nucleic Acids Res
, vol.38
, pp. D497-D501
-
-
Ruepp, A.1
Waegele, B.2
Lechner, M.3
Brauner, B.4
Dunger-Kaltenbach, I.5
Fobo, G.6
Frishman, G.7
Montrone, C.8
Mewes, H.W.9
|