-
2
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. the Gene Ontology Consortium
-
M. Ashburner, C.A. Ball, J.A. Blake, D. Botstein, H. Butler, J.M. Cherry, A.P. Davis, K. Dolinski, S.S. Dwight, and J.T. Eppig Gene ontology: tool for the unification of biology. The Gene Ontology Consortium Nat. Genet. 25 2000 25 29
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
3
-
-
0035912064
-
Tumor suppression and potentiation by manipulation of pp32 expression
-
J. Bai, J.R. Brody, S.S. Kadkol, and G.R. Pasternack Tumor suppression and potentiation by manipulation of pp32 expression Oncogene 20 2001 2153 2160
-
(2001)
Oncogene
, vol.20
, pp. 2153-2160
-
-
Bai, J.1
Brody, J.R.2
Kadkol, S.S.3
Pasternack, G.R.4
-
4
-
-
0742305866
-
Network biology: Understanding the cell's functional organization
-
A.L. Barabasi, and Z.N. Oltvai Network biology: understanding the cell's functional organization Nat. Rev. Genet. 5 2004 101 113
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 101-113
-
-
Barabasi, A.L.1
Oltvai, Z.N.2
-
5
-
-
0034669058
-
Pontin52 and reptin52 function as antagonistic regulators of beta-catenin signalling activity
-
A. Bauer, S. Chauvet, O. Huber, F. Usseglio, U. Rothbacher, D. Aragnol, R. Kemler, and J. Pradel Pontin52 and reptin52 function as antagonistic regulators of beta-catenin signalling activity EMBO J. 19 2000 6121 6130
-
(2000)
EMBO J.
, vol.19
, pp. 6121-6130
-
-
Bauer, A.1
Chauvet, S.2
Huber, O.3
Usseglio, F.4
Rothbacher, U.5
Aragnol, D.6
Kemler, R.7
Pradel, J.8
-
6
-
-
0029781509
-
Functional interaction of beta-catenin with the transcription factor LEF-1
-
J. Behrens, J.P. von Kries, M. Kuhl, L. Bruhn, D. Wedlich, R. Grosschedl, and W. Birchmeier Functional interaction of beta-catenin with the transcription factor LEF-1 Nature 382 1996 638 642
-
(1996)
Nature
, vol.382
, pp. 638-642
-
-
Behrens, J.1
Von Kries, J.P.2
Kuhl, M.3
Bruhn, L.4
Wedlich, D.5
Grosschedl, R.6
Birchmeier, W.7
-
7
-
-
2942544498
-
Protein interaction networks from yeast to human
-
P. Bork, L.J. Jensen, C. von Mering, A.K. Ramani, I. Lee, and E.M. Marcotte Protein interaction networks from yeast to human Curr. Opin. Struct. Biol. 14 2004 292 299
-
(2004)
Curr. Opin. Struct. Biol.
, vol.14
, pp. 292-299
-
-
Bork, P.1
Jensen, L.J.2
Von Mering, C.3
Ramani, A.K.4
Lee, I.5
Marcotte, E.M.6
-
8
-
-
4444276194
-
Essential role of BCL9-2 in the switch between beta-catenin's adhesive and transcriptional functions
-
F.H. Brembeck, T. Schwarz-Romond, J. Bakkers, S. Wilhelm, M. Hammerschmidt, and W. Birchmeier Essential role of BCL9-2 in the switch between beta-catenin's adhesive and transcriptional functions Genes Dev. 18 2004 2225 2230
-
(2004)
Genes Dev.
, vol.18
, pp. 2225-2230
-
-
Brembeck, F.H.1
Schwarz-Romond, T.2
Bakkers, J.3
Wilhelm, S.4
Hammerschmidt, M.5
Birchmeier, W.6
-
9
-
-
0032212208
-
A method for global protein expression and antibody screening on high-density filters of an arrayed cDNA library
-
K. Bussow, D. Cahill, W. Nietfeld, D. Bancroft, E. Scherzinger, H. Lehrach, and G. Walter A method for global protein expression and antibody screening on high-density filters of an arrayed cDNA library Nucleic Acids Res. 26 1998 5007 5008
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 5007-5008
-
-
Bussow, K.1
Cahill, D.2
Nietfeld, W.3
Bancroft, D.4
Scherzinger, E.5
Lehrach, H.6
Walter, G.7
-
10
-
-
3543143101
-
Functional proteomics mapping of a human signaling pathway
-
F. Colland, X. Jacq, V. Trouplin, C. Mougin, C. Groizeleau, A. Hamburger, A. Meil, J. Wojcik, P. Legrain, and J.M. Gauthier Functional proteomics mapping of a human signaling pathway Genome Res. 14 2004 1324 1332
-
(2004)
Genome Res.
, vol.14
, pp. 1324-1332
-
-
Colland, F.1
Jacq, X.2
Trouplin, V.3
Mougin, C.4
Groizeleau, C.5
Hamburger, A.6
Meil, A.7
Wojcik, J.8
Legrain, P.9
Gauthier, J.M.10
-
11
-
-
0037160782
-
The muscular dystrophies
-
A.E. Emery The muscular dystrophies Lancet 359 2002 687 695
-
(2002)
Lancet
, vol.359
, pp. 687-695
-
-
Emery, A.E.1
-
12
-
-
20144379646
-
Protein interaction mapping: A Drosophila case study
-
E. Formstecher, S. Aresta, V. Collura, A. Hamburger, A. Meil, A. Trehin, C. Reverdy, V. Betin, S. Maire, and C. Brun Protein interaction mapping: a Drosophila case study Genome Res. 15 2005 376 384
-
(2005)
Genome Res.
, vol.15
, pp. 376-384
-
-
Formstecher, E.1
Aresta, S.2
Collura, V.3
Hamburger, A.4
Meil, A.5
Trehin, A.6
Reverdy, C.7
Betin, V.8
Maire, S.9
Brun, C.10
-
13
-
-
0141561891
-
Integrating 'omic' information: A bridge between genomics and systems biology
-
H. Ge, A.J. Walhout, and M. Vidal Integrating 'omic' information: a bridge between genomics and systems biology Trends Genet. 19 2003 551 560
-
(2003)
Trends Genet.
, vol.19
, pp. 551-560
-
-
Ge, H.1
Walhout, A.J.2
Vidal, M.3
-
14
-
-
0345600247
-
A protein interaction map of Drosophila melanogaster
-
L. Giot, J.S. Bader, C. Brouwer, A. Chaudhuri, B. Kuang, Y. Li, Y.L. Hao, C.E. Ooi, B. Godwin, and E. Vitols A protein interaction map of Drosophila melanogaster Science 302 2003 1727 1736
-
(2003)
Science
, vol.302
, pp. 1727-1736
-
-
Giot, L.1
Bader, J.S.2
Brouwer, C.3
Chaudhuri, A.4
Kuang, B.5
Li, Y.6
Hao, Y.L.7
Ooi, C.E.8
Godwin, B.9
Vitols, E.10
-
15
-
-
4644231870
-
A protein interaction network links GIT1, an enhancer of huntingtin aggregation, to Huntington's disease
-
H. Goehler, M. Lalowski, U. Stelzl, S. Waelter, M. Stroedicke, U. Worm, A. Droege, K.S. Linderberg, M. Knoblich, and C. Haenig A protein interaction network links GIT1, an enhancer of huntingtin aggregation, to Huntington's disease Mol. Cell 15 2004 853 865
-
(2004)
Mol. Cell
, vol.15
, pp. 853-865
-
-
Goehler, H.1
Lalowski, M.2
Stelzl, U.3
Waelter, S.4
Stroedicke, M.5
Worm, U.6
Droege, A.7
Linderberg, K.S.8
Knoblich, M.9
Haenig, C.10
-
16
-
-
0037447257
-
Assessing experimentally derived interactions in a small world
-
D.S. Goldberg, and F.P. Roth Assessing experimentally derived interactions in a small world Proc. Natl. Acad. Sci. USA 100 2003 4372 4376
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 4372-4376
-
-
Goldberg, D.S.1
Roth, F.P.2
-
17
-
-
3042848952
-
Evidence for dynamically organized modularity in the yeast protein-protein interaction network
-
J.D. Han, N. Bertin, T. Hao, D.S. Goldberg, G.F. Berriz, L.V. Zhang, D. Dupuy, A.J. Walhout, M.E. Cusick, F.P. Roth, and M. Vidal Evidence for dynamically organized modularity in the yeast protein-protein interaction network Nature 430 2004 88 93
-
(2004)
Nature
, vol.430
, pp. 88-93
-
-
Han, J.D.1
Bertin, N.2
Hao, T.3
Goldberg, D.S.4
Berriz, G.F.5
Zhang, L.V.6
Dupuy, D.7
Walhout, A.J.8
Cusick, M.E.9
Roth, F.P.10
Vidal, M.11
-
18
-
-
24944442468
-
Effect of sampling on topology predictions of protein-protein interaction networks
-
J.D. Han, D. Dupuy, N. Bertin, M.E. Cusick, and M. Vidal Effect of sampling on topology predictions of protein-protein interaction networks Nat. Biotechnol. 23 2005 839 844
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 839-844
-
-
Han, J.D.1
Dupuy, D.2
Bertin, N.3
Cusick, M.E.4
Vidal, M.5
-
19
-
-
0035479835
-
New aspects of Wnt signaling pathways in higher vertebrates
-
J. Huelsken, and W. Birchmeier New aspects of Wnt signaling pathways in higher vertebrates Curr. Opin. Genet. Dev. 11 2001 547 553
-
(2001)
Curr. Opin. Genet. Dev.
, vol.11
, pp. 547-553
-
-
Huelsken, J.1
Birchmeier, W.2
-
20
-
-
0035836765
-
A comprehensive two-hybrid analysis to explore the yeast protein interactome
-
T. Ito, T. Chiba, R. Ozawa, M. Yoshida, M. Hattori, and Y. Sakaki A comprehensive two-hybrid analysis to explore the yeast protein interactome Proc. Natl. Acad. Sci. USA 98 2001 4569 4574
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 4569-4574
-
-
Ito, T.1
Chiba, T.2
Ozawa, R.3
Yoshida, M.4
Hattori, M.5
Sakaki, Y.6
-
22
-
-
0345863935
-
The KEGG resource for deciphering the genome
-
M. Kanehisa, S. Goto, S. Kawashima, Y. Okuno, and M. Hattori The KEGG resource for deciphering the genome Nucleic Acids Res. 32 2004 D277 D280
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Kanehisa, M.1
Goto, S.2
Kawashima, S.3
Okuno, Y.4
Hattori, M.5
-
23
-
-
14744270216
-
A first-draft human protein-interaction map
-
B. Lehner, and A.G. Fraser A first-draft human protein-interaction map Genome Biol. 5 2004 R63
-
(2004)
Genome Biol.
, vol.5
, pp. 63
-
-
Lehner, B.1
Fraser, A.G.2
-
24
-
-
9144264169
-
A map of the interactome network of the metazoan C. elegans
-
S. Li, C.M. Armstrong, N. Bertin, H. Ge, S. Milstein, M. Boxem, P.O. Vidalain, J.D. Han, A. Chesneau, and T. Hao A map of the interactome network of the metazoan C. elegans Science 303 2004 540 543
-
(2004)
Science
, vol.303
, pp. 540-543
-
-
Li, S.1
Armstrong, C.M.2
Bertin, N.3
Ge, H.4
Milstein, S.5
Boxem, M.6
Vidalain, P.O.7
Han, J.D.8
Chesneau, A.9
Hao, T.10
-
25
-
-
8444251784
-
The Wnt signaling pathway in development and disease
-
C.Y. Logan, and R. Nusse The Wnt signaling pathway in development and disease Annu. Rev. Cell Dev. Biol. 20 2004 781 810
-
(2004)
Annu. Rev. Cell Dev. Biol.
, vol.20
, pp. 781-810
-
-
Logan, C.Y.1
Nusse, R.2
-
26
-
-
1842507650
-
Axin: A master scaffold for multiple signaling pathways
-
W. Luo, and S.C. Lin Axin: a master scaffold for multiple signaling pathways Neurosignals 13 2004 99 113
-
(2004)
Neurosignals
, vol.13
, pp. 99-113
-
-
Luo, W.1
Lin, S.C.2
-
27
-
-
0035211290
-
Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs"
-
L.R. Matthews, P. Vaglio, J. Reboul, H. Ge, B.P. Davis, J. Garrels, S. Vincent, and M. Vidal Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs" Genome Res. 11 2001 2120 2126
-
(2001)
Genome Res.
, vol.11
, pp. 2120-2126
-
-
Matthews, L.R.1
Vaglio, P.2
Reboul, J.3
Ge, H.4
Davis, B.P.5
Garrels, J.6
Vincent, S.7
Vidal, M.8
-
28
-
-
9144242935
-
MIPS: Analysis and annotation of proteins from whole genomes
-
H.W. Mewes, C. Amid, R. Arnold, D. Frishman, U. Guldener, G. Mannhaupt, M. Munsterkotter, P. Pagel, N. Strack, and V. Stumpflen MIPS: analysis and annotation of proteins from whole genomes Nucleic Acids Res. 32 2004 D41 D44
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Mewes, H.W.1
Amid, C.2
Arnold, R.3
Frishman, D.4
Guldener, U.5
Mannhaupt, G.6
Munsterkotter, M.7
Pagel, P.8
Strack, N.9
Stumpflen, V.10
-
29
-
-
0037174670
-
Network motifs: Simple building blocks of complex networks
-
R. Milo, S. Shen-Orr, S. Itzkovitz, N. Kashtan, D. Chklovskii, and U. Alon Network motifs: simple building blocks of complex networks Science 298 2002 824 827
-
(2002)
Science
, vol.298
, pp. 824-827
-
-
Milo, R.1
Shen-Orr, S.2
Itzkovitz, S.3
Kashtan, N.4
Chklovskii, D.5
Alon, U.6
-
30
-
-
10744224197
-
Development of human protein reference database as an initial platform for approaching systems biology in humans
-
S. Peri, J.D. Navarro, R. Amanchy, T.Z. Kristiansen, C.K. Jonnalagadda, V. Surendranath, V. Niranjan, B. Muthusamy, T.K. Gandhi, and M. Gronborg Development of human protein reference database as an initial platform for approaching systems biology in humans Genome Res. 13 2003 2363 2371
-
(2003)
Genome Res.
, vol.13
, pp. 2363-2371
-
-
Peri, S.1
Navarro, J.D.2
Amanchy, R.3
Kristiansen, T.Z.4
Jonnalagadda, C.K.5
Surendranath, V.6
Niranjan, V.7
Muthusamy, B.8
Gandhi, T.K.9
Gronborg, M.10
-
31
-
-
0035843145
-
The protein-protein interaction map of Helicobacter pylori
-
J.C. Rain, L. Selig, H. De Reuse, V. Battaglia, C. Reverdy, S. Simon, G. Lenzen, F. Petel, J. Wojcik, and V. Schachter The protein-protein interaction map of Helicobacter pylori Nature 409 2001 211 215
-
(2001)
Nature
, vol.409
, pp. 211-215
-
-
Rain, J.C.1
Selig, L.2
De Reuse, H.3
Battaglia, V.4
Reverdy, C.5
Simon, S.6
Lenzen, G.7
Petel, F.8
Wojcik, J.9
Schachter, V.10
-
32
-
-
25144516911
-
Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome
-
A.K. Ramani, R.C. Bunescu, R.J. Mooney, and E.M. Marcotte Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome Genome Biol. 6 2005 R40
-
(2005)
Genome Biol.
, vol.6
, pp. 40
-
-
Ramani, A.K.1
Bunescu, R.C.2
Mooney, R.J.3
Marcotte, E.M.4
-
33
-
-
0037199968
-
Hierarchical organization of modularity in metabolic networks
-
E. Ravasz, A.L. Somera, D.A. Mongru, Z.N. Oltvai, and A.L. Barabasi Hierarchical organization of modularity in metabolic networks Science 297 2002 1551 1555
-
(2002)
Science
, vol.297
, pp. 1551-1555
-
-
Ravasz, E.1
Somera, A.L.2
Mongru, D.A.3
Oltvai, Z.N.4
Barabasi, A.L.5
-
34
-
-
0035861990
-
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
-
M. Remm, C.E. Storm, and E.L. Sonnhammer Automatic clustering of orthologs and in-paralogs from pairwise species comparisons J. Mol. Biol. 314 2001 1041 1052
-
(2001)
J. Mol. Biol.
, vol.314
, pp. 1041-1052
-
-
Remm, M.1
Storm, C.E.2
Sonnhammer, E.L.3
-
35
-
-
0037134538
-
Regulation of histone acetylation and transcription by nuclear protein pp32, a subunit of the INHAT complex
-
S.B. Seo, T. Macfarlan, P. McNamara, R. Hong, Y. Mukai, S. Heo, and D. Chakravarti Regulation of histone acetylation and transcription by nuclear protein pp32, a subunit of the INHAT complex J. Biol. Chem. 277 2002 14005 14010
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 14005-14010
-
-
Seo, S.B.1
MacFarlan, T.2
McNamara, P.3
Hong, R.4
Mukai, Y.5
Heo, S.6
Chakravarti, D.7
-
36
-
-
0037219922
-
Collapsin response mediator protein-1: A novel invasion-suppressor gene
-
J.Y. Shih, Y.C. Lee, S.C. Yang, T.M. Hong, C.Y. Huang, and P.C. Yang Collapsin response mediator protein-1: a novel invasion-suppressor gene Clin. Exp. Metastasis 20 2003 69 76
-
(2003)
Clin. Exp. Metastasis
, vol.20
, pp. 69-76
-
-
Shih, J.Y.1
Lee, Y.C.2
Yang, S.C.3
Hong, T.M.4
Huang, C.Y.5
Yang, P.C.6
-
37
-
-
0035826155
-
Exploring complex networks
-
S.H. Strogatz Exploring complex networks Nature 410 2001 268 276
-
(2001)
Nature
, vol.410
, pp. 268-276
-
-
Strogatz, S.H.1
-
38
-
-
0034628508
-
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
-
P. Uetz, L. Giot, G. Cagney, T.A. Mansfield, R.S. Judson, J.R. Knight, D. Lockshon, V. Narayan, M. Srinivasan, and P. Pochart A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae Nature 403 2000 623 627
-
(2000)
Nature
, vol.403
, pp. 623-627
-
-
Uetz, P.1
Giot, L.2
Cagney, G.3
Mansfield, T.A.4
Judson, R.S.5
Knight, J.R.6
Lockshon, D.7
Narayan, V.8
Srinivasan, M.9
Pochart, P.10
-
39
-
-
0030813618
-
Biochemical characterization of mapmodulin, a protein that binds microtubule-associated proteins
-
N. Ulitzur, C. Rancano, and S.R. Pfeffer Biochemical characterization of mapmodulin, a protein that binds microtubule-associated proteins J. Biol. Chem. 272 1997 30577 30582
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 30577-30582
-
-
Ulitzur, N.1
Rancano, C.2
Pfeffer, S.R.3
-
40
-
-
1542345539
-
Increasing specificity in high-throughput yeast two-hybrid experiments
-
P.O. Vidalain, M. Boxem, H. Ge, S. Li, and M. Vidal Increasing specificity in high-throughput yeast two-hybrid experiments Methods 32 2004 363 370
-
(2004)
Methods
, vol.32
, pp. 363-370
-
-
Vidalain, P.O.1
Boxem, M.2
Ge, H.3
Li, S.4
Vidal, M.5
-
41
-
-
0037161731
-
Comparative assessment of large-scale data sets of protein-protein interactions
-
C. von Mering, R. Krause, B. Snel, M. Cornell, S.G. Oliver, S. Fields, and P. Bork Comparative assessment of large-scale data sets of protein-protein interactions Nature 417 2002 399 403
-
(2002)
Nature
, vol.417
, pp. 399-403
-
-
Von Mering, C.1
Krause, R.2
Snel, B.3
Cornell, M.4
Oliver, S.G.5
Fields, S.6
Bork, P.7
-
42
-
-
0034614678
-
Protein interaction mapping in C. elegans using proteins involved in vulval development
-
A. Walhout, R. Sordella, X. Lu, J. Hartley, G. Temple, M. Brasch, N. Thierry-Mieg, and M. Vidal Protein interaction mapping in C. elegans using proteins involved in vulval development Science 287 2000 116 122
-
(2000)
Science
, vol.287
, pp. 116-122
-
-
Walhout, A.1
Sordella, R.2
Lu, X.3
Hartley, J.4
Temple, G.5
Brasch, M.6
Thierry-Mieg, N.7
Vidal, M.8
-
43
-
-
0141484611
-
Evolutionary conservation of motif constituents in the yeast protein interaction network
-
S. Wuchty, Z.N. Oltvai, and A.L. Barabasi Evolutionary conservation of motif constituents in the yeast protein interaction network Nat. Genet. 35 2003 176 179
-
(2003)
Nat. Genet.
, vol.35
, pp. 176-179
-
-
Wuchty, S.1
Oltvai, Z.N.2
Barabasi, A.L.3
-
44
-
-
1942469444
-
Network motifs in integrated cellular networks of transcription- regulation and protein-protein interaction
-
E. Yeger-Lotem, S. Sattath, N. Kashtan, S. Itzkovitz, R. Milo, R.Y. Pinter, U. Alon, and H. Margalit Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction Proc. Natl. Acad. Sci. USA 101 2004 5934 5939
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 5934-5939
-
-
Yeger-Lotem, E.1
Sattath, S.2
Kashtan, N.3
Itzkovitz, S.4
Milo, R.5
Pinter, R.Y.6
Alon, U.7
Margalit, H.8
-
45
-
-
1242264487
-
TopNet: A tool for comparing biological sub-networks, correlating protein properties with topological statistics
-
H. Yu, X. Zhu, D. Greenbaum, J. Karro, and M. Gerstein TopNet: a tool for comparing biological sub-networks, correlating protein properties with topological statistics Nucleic Acids Res. 32 2004 328 337
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 328-337
-
-
Yu, H.1
Zhu, X.2
Greenbaum, D.3
Karro, J.4
Gerstein, M.5
|