메뉴 건너뛰기




Volumn 8, Issue 10, 2010, Pages

Chromosomal redistribution of male-biased genes in mammalian evolution with two bursts of gene gain on the X chromosome

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA;

EID: 78149404797     PISSN: 15449173     EISSN: 15457885     Source Type: Journal    
DOI: 10.1371/journal.pbio.1000494     Document Type: Article
Times cited : (156)

References (76)
  • 1
    • 33746218184 scopus 로고    scopus 로고
    • Evolution on the X chromosome: Unusual patterns and processes
    • Vicoso B, Charlesworth B (2006) Evolution on the X chromosome: unusual patterns and processes. Nat Rev Genet 7: 645-653.
    • (2006) Nat Rev Genet , vol.7 , pp. 645-653
    • Vicoso, B.1    Charlesworth, B.2
  • 2
    • 0021554565 scopus 로고
    • Sex chromosomes and the evolution of sexual dimorphism
    • Rice WR (1984) Sex chromosomes and the evolution of sexual dimorphism. Evolution 38: 735-742.
    • (1984) Evolution , vol.38 , pp. 735-742
    • Rice, W.R.1
  • 3
    • 0023501735 scopus 로고
    • The relative rates of evolution of sex chromosomes and autosomes
    • Charlesworth B, Coyne JA, Barton NH (1987) The relative rates of evolution of sex chromosomes and autosomes. Am Nat 130: 113.
    • (1987) Am Nat , vol.130 , pp. 113
    • Charlesworth, B.1    Coyne, J.A.2    Barton, N.H.3
  • 4
    • 0026947540 scopus 로고
    • X inactivation in mammalian testis is correlated with inactive X-specific transcription
    • Richler C, Soreq H, Wahrman J (1992) X inactivation in mammalian testis is correlated with inactive X-specific transcription. Nat Genet 2: 192-195.
    • (1992) Nat Genet , vol.2 , pp. 192-195
    • Richler, C.1    Soreq, H.2    Wahrman, J.3
  • 5
    • 73649118486 scopus 로고    scopus 로고
    • Stage-specific expression profiling of Drosophila spermatogenesis suggests that meiotic sex chromosome inactivation drives genomic relocation of testis-expressed genes
    • doi:10.1371/journal.pgen.1000731
    • Vibranovski MD, Lopes HF, Karr TL, Long M (2009) Stage-specific expression profiling of Drosophila spermatogenesis suggests that meiotic sex chromosome inactivation drives genomic relocation of testis-expressed genes. PLoS Genet 5: e1000731. doi:10.1371/journal.pgen.1000731.
    • (2009) PLoS Genet , vol.5
    • Vibranovski, M.D.1    Lopes, H.F.2    Karr, T.L.3    Long, M.4
  • 6
    • 0015253206 scopus 로고
    • The role of X-chromosome inactivation during spermatogenesis
    • Lifschytz E, Lindsley DL (1972) The role of X-chromosome inactivation during spermatogenesis. Proc Natl Acad Sci U S A 69: 182-186.
    • (1972) Proc Natl Acad Sci U S A , vol.69 , pp. 182-186
    • Lifschytz, E.1    Lindsley, D.L.2
  • 7
    • 2642558614 scopus 로고    scopus 로고
    • The mouse X chromosome is enriched for sex-biased genes not subject to selection by meiotic sex chromosome inactivation
    • Khil PP, Smirnova NA, Romanienko PJ, Camerini-Otero RD (2004) The mouse X chromosome is enriched for sex-biased genes not subject to selection by meiotic sex chromosome inactivation. Nat Genet 36: 642-646.
    • (2004) Nat Genet , vol.36 , pp. 642-646
    • Khil, P.P.1    Smirnova, N.A.2    Romanienko, P.J.3    Camerini-Otero, R.D.4
  • 8
    • 0036906987 scopus 로고    scopus 로고
    • Retroposed new genes out of the X in Drosophila
    • Betran E, Thornton K, Long M (2002) Retroposed new genes out of the X in Drosophila. Genome Res 12: 1854-1859.
    • (2002) Genome Res , vol.12 , pp. 1854-1859
    • Betran, E.1    Thornton, K.2    Long, M.3
  • 9
    • 1642475221 scopus 로고    scopus 로고
    • Extensive gene traffic on the mammalian X chromosome
    • Emerson JJ, Kaessmann H, Betran E, Long M (2004) Extensive gene traffic on the mammalian X chromosome. Science 303: 537-540.
    • (2004) Science , vol.303 , pp. 537-540
    • Emerson, J.J.1    Kaessmann, H.2    Betran, E.3    Long, M.4
  • 10
    • 43249118306 scopus 로고    scopus 로고
    • Chromosomal gene movements reflect the recent origin and biology of therian sex chromosomes
    • e80. doi:10.1371/journal. pbio.0060080
    • Potrzebowski L, Vinckenbosch N, Marques AC, Chalmel F, Jegou B, et al. (2008) Chromosomal gene movements reflect the recent origin and biology of therian sex chromosomes. PLoS Biol 6: e80. doi:10.1371/journal. pbio.0060080.
    • (2008) PLoS Biol , vol.6
    • Potrzebowski, L.1    Vinckenbosch, N.2    Marques, A.C.3    Chalmel, F.4    Jegou, B.5
  • 11
    • 0037504137 scopus 로고    scopus 로고
    • Sex-dependent gene expression and evolution of the Drosophila transcriptome
    • Ranz JM, Castillo-Davis CI, Meiklejohn CD, Hartl DL (2003) Sex-dependent gene expression and evolution of the Drosophila transcriptome. Science 300: 1742-1745.
    • (2003) Science , vol.300 , pp. 1742-1745
    • Ranz, J.M.1    Castillo-Davis, C.I.2    Meiklejohn, C.D.3    Hartl, D.L.4
  • 12
    • 0346460960 scopus 로고    scopus 로고
    • Paucity of genes on the Drosophila X chromosome showing male-biased expression
    • Parisi M, Nuttall R, Naiman D, Bouffard G, Malley J, et al. (2003) Paucity of genes on the Drosophila X chromosome showing male-biased expression. Science 299: 697-700.
    • (2003) Science , vol.299 , pp. 697-700
    • Parisi, M.1    Nuttall, R.2    Naiman, D.3    Bouffard, G.4    Malley, J.5
  • 13
    • 33745585334 scopus 로고    scopus 로고
    • Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression
    • Levine MT, Jones CD, Kern AD, Lindfors HA, Begun DJ (2006) Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression. Proc Natl Acad Sci U S A 103: 9935-9939.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 9935-9939
    • Levine, M.T.1    Jones, C.D.2    Kern, A.D.3    Lindfors, H.A.4    Begun, D.J.5
  • 14
    • 33646932130 scopus 로고    scopus 로고
    • Origination of an X-linked testes chimeric gene by illegitimate recombination in Drosophila
    • doi:10.1371/journal.pgen.0020077
    • Arguello JR, Chen Y, Yang S, Wang W, Long M (2006) Origination of an X-linked testes chimeric gene by illegitimate recombination in Drosophila. PLoS Genet 2: e77. doi:10.1371/journal.pgen.0020077.
    • (2006) PLoS Genet , vol.2
    • Arguello, J.R.1    Chen, Y.2    Yang, S.3    Wang, W.4    Long, M.5
  • 15
    • 34547637650 scopus 로고    scopus 로고
    • Evolution of hydra, a recently evolved testis-expressed gene with nine alternative first exons in Drosophila melanogaster
    • doi:10.1371/journal. pgen.0030107
    • Chen ST, Cheng HC, Barbash DA, Yang HP (2007) Evolution of hydra, a recently evolved testis-expressed gene with nine alternative first exons in Drosophila melanogaster. PLoS Genet 3: e107. doi:10.1371/journal. pgen.0030107.
    • (2007) PLoS Genet , vol.3
    • Chen, S.T.1    Cheng, H.C.2    Barbash, D.A.3    Yang, H.P.4
  • 16
    • 43749100749 scopus 로고    scopus 로고
    • Bird-like sex chromosomes of platypus imply recent origin of mammal sex chromosomes
    • Veyrunes F, Waters PD, Miethke P, Rens W, McMillan D, et al. (2008) Bird-like sex chromosomes of platypus imply recent origin of mammal sex chromosomes. Genome Res 18: 965-973.
    • (2008) Genome Res , vol.18 , pp. 965-973
    • Veyrunes, F.1    Waters, P.D.2    Miethke, P.3    Rens, W.4    McMillan, D.5
  • 18
    • 6344222248 scopus 로고    scopus 로고
    • Human, mouse, and rat genome large-scale rearrangements: Stability versus speciation
    • Zhao S, Shetty J, Hou L, Delcher A, Zhu B, et al. (2004) Human, mouse, and rat genome large-scale rearrangements: stability versus speciation. Genome Res 14: 1851-1860.
    • (2004) Genome Res , vol.14 , pp. 1851-1860
    • Zhao, S.1    Shetty, J.2    Hou, L.3    Delcher, A.4    Zhu, B.5
  • 20
    • 0036468881 scopus 로고    scopus 로고
    • Vertebrate genome sequencing: Building a backbone for comparative genomics
    • Thomas JW, Touchman JW (2002) Vertebrate genome sequencing: building a backbone for comparative genomics. Trends Genet 18: 104-108.
    • (2002) Trends Genet , vol.18 , pp. 104-108
    • Thomas, J.W.1    Touchman, J.W.2
  • 22
    • 20744450565 scopus 로고    scopus 로고
    • Autosomal location of genes from the conserved mammalian X in the platypus (Ornithorhynchus anatinus): Implications for mammalian sex chromosome evolution
    • Waters PD, Delbridge ML, Deakin JE, El-Mogharbel N, Kirby PJ, et al. (2005) Autosomal location of genes from the conserved mammalian X in the platypus (Ornithorhynchus anatinus): implications for mammalian sex chromosome evolution. Chromosome Res 13: 401-410.
    • (2005) Chromosome Res , vol.13 , pp. 401-410
    • Waters, P.D.1    Delbridge, M.L.2    Deakin, J.E.3    El-Mogharbel, N.4    Kirby, P.J.5
  • 23
    • 0029874322 scopus 로고    scopus 로고
    • A molecular clock based on the expansion of gene families
    • Trusov Y, Dear P (1996) A molecular clock based on the expansion of gene families. Nucleic Acids Res 24: 995-999.
    • (1996) Nucleic Acids Res , vol.24 , pp. 995-999
    • Trusov, Y.1    Dear, P.2
  • 24
    • 0023697395 scopus 로고
    • Evolutionary conservation of tissue-specific lymphocyte-endothelial cell recognition mechanisms involved in lymphocyte homing
    • Wu NW, Jalkanen S, Streeter PR, Butcher EC (1988) Evolutionary conservation of tissue-specific lymphocyte-endothelial cell recognition mechanisms involved in lymphocyte homing. J Cell Biol 107: 1845-1851.
    • (1988) J Cell Biol , vol.107 , pp. 1845-1851
    • Wu, N.W.1    Jalkanen, S.2    Streeter, P.R.3    Butcher, E.C.4
  • 25
    • 66249148986 scopus 로고    scopus 로고
    • Lineage-specific biology revealed by a finished genome assembly of the mouse
    • doi:10.1371/journal.pbio.1000112
    • Church DM, Goodstadt L, Hillier LW, Zody MC, Goldstein S, et al. (2009) Lineage-specific biology revealed by a finished genome assembly of the mouse. PLoS Biol 7: e1000112. doi:10.1371/journal.pbio.1000112.
    • (2009) PLoS Biol , vol.7
    • Church, D.M.1    Goodstadt, L.2    Hillier, L.W.3    Zody, M.C.4    Goldstein, S.5
  • 27
    • 46649115515 scopus 로고    scopus 로고
    • Using ribosomal protein genes as reference: A tale of caution
    • doi:10.1371/journal.pone.0001854
    • Thorrez L, Van Deun K, Tranchevent LC, Van Lommel L, Engelen K, et al. (2008) Using ribosomal protein genes as reference: a tale of caution. PLoS ONE 3: e1854. doi:10.1371/journal.pone.0001854.
    • (2008) PLoS ONE , vol.3
    • Thorrez, L.1    van Deun, K.2    Tranchevent, L.C.3    van Lommel, L.4    Engelen, K.5
  • 29
    • 65949109041 scopus 로고    scopus 로고
    • Accelerated adaptive evolution on a newly formed X chromosome
    • doi:10.1371/journal. pbio.1000082
    • Bachtrog D, Jensen JD, Zhang Z (2009) Accelerated adaptive evolution on a newly formed X chromosome. PLoS Biol 7: e82. doi:10.1371/journal. pbio.1000082.
    • (2009) PLoS Biol , vol.7
    • Bachtrog, D.1    Jensen, J.D.2    Zhang, Z.3
  • 31
    • 3042544623 scopus 로고    scopus 로고
    • The genomic rate of adaptive amino acid substitution in drosophila
    • Bierne N, Eyre-Walker A (2004) The genomic rate of adaptive amino acid substitution in drosophila. Mol Biol Evol 21: 1350-1360.
    • (2004) Mol Biol Evol , vol.21 , pp. 1350-1360
    • Bierne, N.1    Eyre-Walker, A.2
  • 32
    • 46249105777 scopus 로고    scopus 로고
    • Natural selection shapes genome-wide patterns of copy-number polymorphism in drosophila melanogaster
    • Emerson JJ, Cardoso-Moreira M, Borevitz JO, Long M (2008) Natural selection shapes genome-wide patterns of copy-number polymorphism in drosophila melanogaster. Science 320: 1629-1631.
    • (2008) Science , vol.320 , pp. 1629-1631
    • Emerson, J.J.1    Cardoso-Moreira, M.2    Borevitz, J.O.3    Long, M.4
  • 33
    • 3242808027 scopus 로고    scopus 로고
    • Large-scale copy number polymorphism in the human genome
    • Sebat J, Lakshmi B, Troge J, Alexander J, Young J, et al. (2004) Large-scale copy number polymorphism in the human genome. Science 305: 525-528.
    • (2004) Science , vol.305 , pp. 525-528
    • Sebat, J.1    Lakshmi, B.2    Troge, J.3    Alexander, J.4    Young, J.5
  • 34
    • 44349137392 scopus 로고    scopus 로고
    • The mouse X chromosome is enriched for multicopy testis genes showing postmeiotic expression
    • Mueller J, Mahadevaiah S, Park P, Warburton P, Page D, et al. (2008) The mouse X chromosome is enriched for multicopy testis genes showing postmeiotic expression. Nat Genet 40: 794-799.
    • (2008) Nat Genet , vol.40 , pp. 794-799
    • Mueller, J.1    Mahadevaiah, S.2    Park, P.3    Warburton, P.4    Page, D.5
  • 37
    • 46149123689 scopus 로고    scopus 로고
    • Stage-specific gene expression is a fundamental characteristic of rat spermatogenic cells and Sertoli cells
    • Johnston D, Wright W, DiCandeloro P, Wilson E, Kopf G, et al. (2008) Stage-specific gene expression is a fundamental characteristic of rat spermatogenic cells and Sertoli cells. Proc Natl Acad Sci U S A 105: 8315.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 8315
    • Johnston, D.1    Wright, W.2    Dicandeloro, P.3    Wilson, E.4    Kopf, G.5
  • 38
    • 22144447840 scopus 로고    scopus 로고
    • Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees
    • Khaitovich P, Hellmann I, Enard W, Nowick K, Leinweber M, et al. (2005) Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees. Science 309: 1850-1854.
    • (2005) Science , vol.309 , pp. 1850-1854
    • Khaitovich, P.1    Hellmann, I.2    Enard, W.3    Nowick, K.4    Leinweber, M.5
  • 39
    • 33751381461 scopus 로고    scopus 로고
    • TimeTree: A public knowledge-base of divergence times among organisms
    • Hedges SB, Dudley J, Kumar S (2006) TimeTree: a public knowledge-base of divergence times among organisms. Bioinformatics 22: 2971-2972.
    • (2006) Bioinformatics , vol.22 , pp. 2971-2972
    • Hedges, S.B.1    Dudley, J.2    Kumar, S.3
  • 40
    • 33751514327 scopus 로고    scopus 로고
    • Nonrandom representation of sex-biased genes on chicken Z chromosome
    • Storchova R, Divina P (2006) Nonrandom representation of sex-biased genes on chicken Z chromosome. J Mol Evol 63: 676-681.
    • (2006) J Mol Evol , vol.63 , pp. 676-681
    • Storchova, R.1    Divina, P.2
  • 41
    • 55749105400 scopus 로고    scopus 로고
    • Gene expression changes in the course of normal brain aging are sexually dimorphic
    • Berchtold NC, Cribbs DH, Coleman PD, Rogers J, Head E, et al. (2008) Gene expression changes in the course of normal brain aging are sexually dimorphic. Proc Natl Acad Sci U S A 105: 15605-15610.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 15605-15610
    • Berchtold, N.C.1    Cribbs, D.H.2    Coleman, P.D.3    Rogers, J.4    Head, E.5
  • 43
    • 52449110023 scopus 로고    scopus 로고
    • Measuring microRNAs: Comparisons of microarray and quantitative PCR measurements, and of different total RNA prep methods
    • Ach RA, Wang H, Curry B (2008) Measuring microRNAs: comparisons of microarray and quantitative PCR measurements, and of different total RNA prep methods. BMC Biotechnol 8: 69.
    • (2008) BMC Biotechnol , vol.8 , pp. 69
    • Ach, R.A.1    Wang, H.2    Curry, B.3
  • 44
    • 63449134696 scopus 로고    scopus 로고
    • Many X-linked microRNAs escape meiotic sex chromosome inactivation
    • Song R, Ro S, Michaels JD, Park C, McCarrey JR, et al. (2009) Many X-linked microRNAs escape meiotic sex chromosome inactivation. Nat Genet 41: 488-493.
    • (2009) Nat Genet , vol.41 , pp. 488-493
    • Song, R.1    Ro, S.2    Michaels, J.D.3    Park, C.4    McCarrey, J.R.5
  • 45
    • 0033615708 scopus 로고    scopus 로고
    • Four evolutionary strata on the human X chromosome
    • Lahn BT, Page DC (1999) Four evolutionary strata on the human X chromosome. Science 286: 964-967.
    • (1999) Science , vol.286 , pp. 964-967
    • Lahn, B.T.1    Page, D.C.2
  • 47
  • 49
    • 52949145627 scopus 로고    scopus 로고
    • Evolutionary steps of sex chromosomes are reflected in retrogenes
    • McLysaght A (2008) Evolutionary steps of sex chromosomes are reflected in retrogenes. Trends Genet 24: 478-481.
    • (2008) Trends Genet , vol.24 , pp. 478-481
    • McLysaght, A.1
  • 50
    • 47649117051 scopus 로고    scopus 로고
    • Effects of X-linkage and sex-biased gene expression on the rate of adaptive protein evolution in drosophila
    • Baines JF, Sawyer SA, Hartl DL, Parsch J (2008) Effects of X-linkage and sex-biased gene expression on the rate of adaptive protein evolution in drosophila. Mol Biol Evol 25: 1639.
    • (2008) Mol Biol Evol , vol.25 , pp. 1639
    • Baines, J.F.1    Sawyer, S.A.2    Hartl, D.L.3    Parsch, J.4
  • 51
  • 52
    • 6344289639 scopus 로고    scopus 로고
    • Inverted repeat structure of the human genome: The X-chromosome contains a preponderance of large, highly homologous inverted repeats that contain testes genes
    • Warburton PE, Giordano J, Cheung F, Gelfand Y, Benson G (2004) Inverted repeat structure of the human genome: the X-chromosome contains a preponderance of large, highly homologous inverted repeats that contain testes genes. Genome Res 14: 1861-1869.
    • (2004) Genome Res , vol.14 , pp. 1861-1869
    • Warburton, P.E.1    Giordano, J.2    Cheung, F.3    Gelfand, Y.4    Benson, G.5
  • 58
    • 50649097020 scopus 로고    scopus 로고
    • On the origin of new genes in Drosophila
    • Zhou Q, Zhang G, Zhang Y, Xu S, Zhao R, et al. (2008) On the origin of new genes in Drosophila. Genome Res 18: 1446-1455.
    • (2008) Genome Res , vol.18 , pp. 1446-1455
    • Zhou, Q.1    Zhang, G.2    Zhang, Y.3    Xu, S.4    Zhao, R.5
  • 59
    • 24344442909 scopus 로고    scopus 로고
    • Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication
    • Linardopoulou E, Williams E, Fan Y, Friedman C, Young J, et al. (2005) Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication. Nature 437: 94-100.
    • (2005) Nature , vol.437 , pp. 94-100
    • Linardopoulou, E.1    Williams, E.2    Fan, Y.3    Friedman, C.4    Young, J.5
  • 60
    • 34147128526 scopus 로고    scopus 로고
    • Comparative genomics reveals a constant rate of origination and convergent acquisition of functional retrogenes in Drosophila
    • Bai Y, Casola C, Feschotte C, Betran E (2007) Comparative genomics reveals a constant rate of origination and convergent acquisition of functional retrogenes in Drosophila. Genome Biol 8: R11.
    • (2007) Genome Biol , vol.8
    • Bai, Y.1    Casola, C.2    Feschotte, C.3    Betran, E.4
  • 61
    • 70349645640 scopus 로고    scopus 로고
    • Recent de novo origin of human protein-coding genes
    • Knowles DG, McLysaght A (2009) Recent de novo origin of human protein-coding genes. Genome Res 19: 1752-1759.
    • (2009) Genome Res , vol.19 , pp. 1752-1759
    • Knowles, D.G.1    McLysaght, A.2
  • 62
    • 29144535372 scopus 로고    scopus 로고
    • Evolving gene/ transcript definitions significantly alter the interpretation of GeneChip data
    • Dai M, Wang P, Boyd AD, Kostov G, Athey B, et al. (2005) Evolving gene/ transcript definitions significantly alter the interpretation of GeneChip data. Nucleic Acids Res 33: e175.
    • (2005) Nucleic Acids Res , vol.33
    • Dai, M.1    Wang, P.2    Boyd, A.D.3    Kostov, G.4    Athey, B.5
  • 63
    • 48249128721 scopus 로고    scopus 로고
    • FIRMA: A method for detection of alternative splicing from exon array data
    • Purdom E, Simpson K, Robinson M, Conboy J, Lapuk A, et al. (2008) FIRMA: a method for detection of alternative splicing from exon array data. Bioinformatics 24: 1707-1714.
    • (2008) Bioinformatics , vol.24 , pp. 1707-1714
    • Purdom, E.1    Simpson, K.2    Robinson, M.3    Conboy, J.4    Lapuk, A.5
  • 64
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: Open software development for computational biology and bioinformatics
    • Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, et al. (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 5: R80.
    • (2004) Genome Biol , vol.5
    • Gentleman, R.C.1    Carey, V.J.2    Bates, D.M.3    Bolstad, B.4    Dettling, M.5
  • 66
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • Storey JD, Tibshirani R (2003) Statistical significance for genomewide studies. Proc Natl Acad Sci U S A 100: 9440-9445.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 67
    • 69549124090 scopus 로고    scopus 로고
    • Computational identification of hepatitis C virus associated microRNA-mRNA regulatory modules in human livers
    • Peng X, Li Y, Walters KA, Rosenzweig ER, Lederer SL, et al. (2009) Computational identification of hepatitis C virus associated microRNA-mRNA regulatory modules in human livers. BMC Genomics 10: 373.
    • (2009) BMC Genomics , vol.10 , pp. 373
    • Peng, X.1    Li, Y.2    Walters, K.A.3    Rosenzweig, E.R.4    Lederer, S.L.5
  • 68
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments
    • Article3
    • Smyth GK (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3: Article3.
    • (2004) Stat Appl Genet Mol Biol , vol.3
    • Smyth, G.K.1
  • 69
    • 33244455951 scopus 로고    scopus 로고
    • Evolutionary conservation of expression profiles between human and mouse orthologous genes
    • Liao B, Zhang J (2006) Evolutionary conservation of expression profiles between human and mouse orthologous genes. Mol Biol Evol 23: 530-540.
    • (2006) Mol Biol Evol , vol.23 , pp. 530-540
    • Liao, B.1    Zhang, J.2
  • 70
    • 72149107901 scopus 로고    scopus 로고
    • Estimates of positive Darwinian selection are inflated by errors in sequencing, annotation, and alignment
    • Schneider A, Souvarov A, Sabath N, Landan G, Gonnet G, et al. (2009) Estimates of positive Darwinian selection are inflated by errors in sequencing, annotation, and alignment. Genome Biol Evol 2009: 114-118.
    • (2009) Genome Biol Evol , vol.2009 , pp. 114-118
    • Schneider, A.1    Souvarov, A.2    Sabath, N.3    Landan, G.4    Gonnet, G.5
  • 71
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • Yang Z (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24: 1586-1591.
    • (2007) Mol Biol Evol , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 72
    • 12344269924 scopus 로고    scopus 로고
    • TermFinder- open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
    • Boyle EI, Weng S, Gollub J, Jin H, Botstein D, et al. (2004) GO::TermFinder- open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics 20: 3710-3715.
    • (2004) Bioinformatics , vol.20 , pp. 3710-3715
    • Boyle, E.I.1    Weng, S.2    Gollub, J.3    Jin, H.4    Botstein, D.5
  • 75
    • 34250756005 scopus 로고    scopus 로고
    • Probe selection and expression index computation of affymetrix exon arrays
    • Xing Y, Kapur K, Wong W (2006) Probe selection and expression index computation of affymetrix exon arrays. PLoS ONE 1: e88.
    • (2006) PLoS ONE , vol.1
    • Xing, Y.1    Kapur, K.2    Wong, W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.