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Volumn 487, Issue 7407, 2012, Pages 370-374

Proto-genes and de novo gene birth

(16)  Carvunis, Anne Ruxandra a,b,c   Rolland, Thomas a,b   Wapinski, Ilan b   Calderwood, Michael A a,b   Yildirim, Muhammed A d   Simonis, Nicolas a,b,j   Charloteaux, Benoit a,b,e   Hidalgo, César A f   Barbette, Justin a,b   Santhanam, Balaji a,b   Brar, Gloria A g   Weissman, Jonathan S g   Regev, Aviv h,i   Thierry Mieg, Nicolas c   Cusick, Michael E a,b   Vidal, Marc a,b  


Author keywords

[No Author keywords available]

Indexed keywords

EVOLUTIONARY BIOLOGY; PEPTIDE; PROTEIN; YEAST;

EID: 84863988094     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature11184     Document Type: Article
Times cited : (460)

References (30)
  • 1
    • 80052969570 scopus 로고    scopus 로고
    • The evolutionary origin of orphan genes
    • Tautz, D. & Domazet-Loso, T. The evolutionary origin of orphan genes. Nature Rev. Genet. 12, 692-702 (2011).
    • (2011) Nature Rev. Genet. , vol.12 , pp. 692-702
    • Tautz, D.1    Domazet-Loso, T.2
  • 2
    • 78649231644 scopus 로고    scopus 로고
    • Origins, evolution, and phenotypic impact of new genes
    • Kaessmann, H. Origins, evolution, and phenotypic impact of new genes. Genome Res. 20, 1313-1326 (2010).
    • (2010) Genome Res. , vol.20 , pp. 1313-1326
    • Kaessmann, H.1
  • 3
    • 0017771466 scopus 로고
    • Evolution and tinkering
    • Jacob, F. Evolution and tinkering. Science 196, 1161-1166 (1977).
    • (1977) Science , vol.196 , pp. 1161-1166
    • Jacob, F.1
  • 4
    • 70349637633 scopus 로고    scopus 로고
    • Darwinian alchemy: Human genes from noncoding DNA
    • Siepel, A. Darwinian alchemy: human genes from noncoding DNA. Genome Res. 19, 1693-1695 (2009).
    • (2009) Genome Res. , vol.19 , pp. 1693-1695
    • Siepel, A.1
  • 5
    • 69449089723 scopus 로고    scopus 로고
    • More than just orphans: Are taxonomically-restricted genesimportant in evolution?
    • Khalturin, K., Hemmrich, G., Fraune, S., Augustin, R. & Bosch, T. C. More than just orphans: are taxonomically-restricted genesimportant in evolution? Trends Genet. 25, 404-413 (2009).
    • (2009) Trends Genet. , vol.25 , pp. 404-413
    • Khalturin, K.1    Hemmrich, G.2    Fraune, S.3    Augustin, R.4    Bosch, T.C.5
  • 6
    • 84857384562 scopus 로고    scopus 로고
    • Putatively noncoding transcripts show extensive association with ribosomes
    • Wilson, B. A. & Masel, J. Putatively noncoding transcripts show extensive association with ribosomes. Genome Biol. Evol. 3, 1245-1252 (2011).
    • (2011) Genome Biol. Evol. , vol.3 , pp. 1245-1252
    • Wilson, B.A.1    Masel, J.2
  • 7
    • 78149452881 scopus 로고    scopus 로고
    • Protein homeostasis and the phenotypic manifestation of genetic diversity: Principles and mechanisms
    • Jarosz, D. F., Taipale, M. & Lindquist, S. Protein homeostasis and the phenotypic manifestation of genetic diversity: principles and mechanisms. Annu. Rev. Genet. 44, 189-216 (2010).
    • (2010) Annu. Rev. Genet. , vol.44 , pp. 189-216
    • Jarosz, D.F.1    Taipale, M.2    Lindquist, S.3
  • 8
    • 50649090652 scopus 로고    scopus 로고
    • De novo origination of a new protein-coding gene in Saccharomyces cerevisiae
    • Cai, J., Zhao, R., Jiang, H. & Wang, W. De novo origination of a new protein-coding gene in Saccharomyces cerevisiae. Genetics 179, 487-496 (2008).
    • (2008) Genetics , vol.179 , pp. 487-496
    • Cai, J.1    Zhao, R.2    Jiang, H.3    Wang, W.4
  • 9
    • 81755187310 scopus 로고    scopus 로고
    • De novo origin of human protein-coding genes
    • Wu, D. D., Irwin, D. M. & Zhang, Y. P. De novo origin of human protein-coding genes. PLoS Genet. 7, e1002379 (2011).
    • (2011) PLoS Genet. , vol.7
    • Wu, D.D.1    Irwin, D.M.2    Zhang, Y.P.3
  • 10
    • 77449140452 scopus 로고    scopus 로고
    • Identifying and quantifying orphan protein sequences in fungi
    • Ekman, D. & Elofsson, A. Identifying and quantifying orphan protein sequences in fungi. J. Mol. Biol. 396, 396-405 (2010).
    • (2010) J. Mol. Biol. , vol.396 , pp. 396-405
    • Ekman, D.1    Elofsson, A.2
  • 12
    • 66149123308 scopus 로고    scopus 로고
    • The universal distributionof evolutionary rates of genes anddistinct characteristics of eukaryotic genes of different apparent ages
    • Wolf, Y. I., Novichkov, P. S., Karev, G. P., Koonin, E. V. & Lipman, D. J. The universal distributionof evolutionary rates of genes anddistinct characteristics of eukaryotic genes of different apparent ages. Proc. Natl Acad. Sci. USA 106, 7273-7280 (2009).
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 7273-7280
    • Wolf, Y.I.1    Novichkov, P.S.2    Karev, G.P.3    Koonin, E.V.4    Lipman, D.J.5
  • 13
    • 77958497573 scopus 로고    scopus 로고
    • Relaxed purifying selection and possibly high rate of adaptation in primate lineage-specific genes
    • Cai, J. J. & Petrov, D. A. Relaxed purifying selection and possibly high rate of adaptation in primate lineage-specific genes. Genome Biol. Evol. 2, 393-409 (2010).
    • (2010) Genome Biol. Evol. , vol.2 , pp. 393-409
    • Cai, J.J.1    Petrov, D.A.2
  • 14
    • 34247224735 scopus 로고    scopus 로고
    • The ambiguous boundary between genes and pseudogenes: The dead rise up, or do they?
    • Zheng, D. & Gerstein, M. B. The ambiguous boundary between genes and pseudogenes: the dead rise up, or do they? Trends Genet. 23, 219-224 (2007).
    • (2007) Trends Genet. , vol.23 , pp. 219-224
    • Zheng, D.1    Gerstein, M.B.2
  • 15
    • 0026572003 scopus 로고
    • The complete DNA sequence of yeast chromosome III
    • Oliver, S. G. et al. The complete DNA sequence of yeast chromosome III. Nature 357, 38-46 (1992).
    • (1992) Nature , vol.357 , pp. 38-46
    • Oliver, S.G.1
  • 16
    • 33750482575 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae S288C genome annotation: A working hypothesis
    • Fisk, D. G. et al. Saccharomyces cerevisiae S288C genome annotation: a working hypothesis. Yeast 23, 857-865 (2006).
    • (2006) Yeast , vol.23 , pp. 857-865
    • Fisk, D.G.1
  • 17
    • 45549088326 scopus 로고    scopus 로고
    • The transcriptional landscape of the yeast genome defined by RNA sequencing
    • Nagalakshmi, U. et al. The transcriptional landscape of the yeast genome defined by RNA sequencing. Science 320, 1344-1349 (2008).
    • (2008) Science , vol.320 , pp. 1344-1349
    • Nagalakshmi, U.1
  • 18
    • 21644469000 scopus 로고    scopus 로고
    • Large-scale exploration of growth inhibition caused by overexpressionofgenomic fragments in Saccharomyces cerevisiae
    • Boyer, J. et al. Large-scale exploration of growth inhibition caused by overexpressionofgenomic fragments in Saccharomyces cerevisiae.GenomeBiol. 5, R72 (2004).
    • (2004) Genome Biol. , vol.5
    • Boyer, J.1
  • 19
    • 84856625798 scopus 로고    scopus 로고
    • High-resolution view of the yeast meiotic program revealed by ribosome profiling
    • Brar, G. A. et al. High-resolution view of the yeast meiotic program revealed by ribosome profiling. Science 335, 552-557 (2012).
    • (2012) Science , vol.335 , pp. 552-557
    • Brar, G.A.1
  • 20
    • 48949087976 scopus 로고    scopus 로고
    • Revisiting the Saccharomyces cerevisiae predictedORFeome
    • Li, Q. R. et al. Revisiting the Saccharomyces cerevisiae predictedORFeome. Genome Res. 18, 1294-1303 (2008).
    • (2008) Genome Res. , vol.18 , pp. 1294-1303
    • Li, Q.R.1
  • 21
    • 0034653294 scopus 로고    scopus 로고
    • Analysis of the yeast transcriptome with structural and functional categories: Characterizing highly expressed proteins
    • Jansen, R. & Gerstein, M. Analysis of the yeast transcriptome with structural and functional categories: characterizing highly expressed proteins. Nucleic Acids Res. 28, 1481-1488 (2000).
    • (2000) Nucleic Acids Res. , vol.28 , pp. 1481-1488
    • Jansen, R.1    Gerstein, M.2
  • 22
    • 33846840904 scopus 로고    scopus 로고
    • The conversion of 39 UTRs into coding regions
    • Giacomelli, M. G., Hancock, A. S. & Masel, J. The conversion of 39 UTRs into coding regions. Mol. Biol. Evol. 24, 457-464 (2007).
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 457-464
    • Giacomelli, M.G.1    Hancock, A.S.2    Masel, J.3
  • 23
    • 73649102781 scopus 로고    scopus 로고
    • Codon usage is associated with the evolutionary age of genes in metazoan genomes
    • Prat, Y., Fromer, M., Linial, N. & Linial, M. Codon usage is associated with the evolutionary age of genes in metazoan genomes. BMC Evol. Biol. 9, 285 (2009).
    • (2009) BMC Evol. Biol. , vol.9 , pp. 285
    • Prat, Y.1    Fromer, M.2    Linial, N.3    Linial, M.4
  • 25
    • 62549134121 scopus 로고    scopus 로고
    • Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
    • Ingolia, N. T., Ghaemmaghami, S., Newman, J. R. & Weissman, J. S. Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 324, 218-223 (2009).
    • (2009) Science , vol.324 , pp. 218-223
    • Ingolia, N.T.1    Ghaemmaghami, S.2    Newman, J.R.3    Weissman, J.S.4
  • 26
    • 78649279918 scopus 로고    scopus 로고
    • Young proteins experience more variable selection pressures than old proteins
    • Vishnoi, A., Kryazhimskiy, S., Bazykin, G. A., Hannenhalli, S. & Plotkin, J. B. Young proteins experience more variable selection pressures than old proteins. Genome Res. 20, 1574-1581 (2010).
    • (2010) Genome Res. , vol.20 , pp. 1574-1581
    • Vishnoi, A.1    Kryazhimskiy, S.2    Bazykin, G.A.3    Hannenhalli, S.4    Plotkin, J.B.5
  • 27
    • 8844244033 scopus 로고    scopus 로고
    • Very low gene duplication rate in the yeast genome
    • Gao, L. Z. & Innan, H. Very low gene duplication rate in the yeast genome. Science 306, 1367-1370 (2004).
    • (2004) Science , vol.306 , pp. 1367-1370
    • Gao, L.Z.1    Innan, H.2
  • 28
    • 79957944389 scopus 로고    scopus 로고
    • Cryptic genetic variation promotes rapid evolutionary adaptation in an RNA enzyme
    • Hayden, E. J., Ferrada, E. & Wagner, A. Cryptic genetic variation promotes rapid evolutionary adaptation in an RNA enzyme. Nature 474, 92-95 (2011).
    • (2011) Nature , vol.474 , pp. 92-95
    • Hayden, E.J.1    Ferrada, E.2    Wagner, A.3
  • 29
    • 0034978556 scopus 로고    scopus 로고
    • Highly expressed genes in yeast evolve slowly
    • Pal, C., Papp, B. & Hurst, L. D. Highly expressed genes in yeast evolve slowly. Genetics 158, 927-931 (2001).
    • (2001) Genetics , vol.158 , pp. 927-931
    • Pal, C.1    Papp, B.2    Hurst, L.D.3
  • 30
    • 30744441602 scopus 로고    scopus 로고
    • A single determinant dominates the rate of yeast protein evolution
    • Drummond, D. A., Raval, A. & Wilke, C. O. A single determinant dominates the rate of yeast protein evolution. Mol. Biol. Evol. 23, 327-337 (2006).
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 327-337
    • Drummond, D.A.1    Raval, A.2    Wilke, C.O.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.