-
1
-
-
84863229647
-
The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome
-
Paik, Y.-K.; Jeong, S.-K.; Omenn, G. S.; Uhlen, M.; Hanash, S.; Cho, S. Y.; Lee, H.-J.; Na, K.; Choi, E.-Y.; Yan, F. et al. The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome Nat. Biotechnol. 2012, 30, 221-223 10.1038/nbt.2152
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 221-223
-
-
Paik, Y.-K.1
Jeong, S.-K.2
Omenn, G.S.3
Uhlen, M.4
Hanash, S.5
Cho, S.Y.6
Lee, H.-J.7
Na, K.8
Choi, E.-Y.9
Yan, F.10
-
2
-
-
84941057782
-
Metrics for the Human Proteome Project 2015: Progress on the Human Proteome and Guidelines for High-Confidence Protein Identification
-
Omenn, G. S.; Lane, L.; Lundberg, E. K.; Beavis, R. C.; Nesvizhskii, A. I.; Deutsch, E. W. Metrics for the Human Proteome Project 2015: Progress on the Human Proteome and Guidelines for High-Confidence Protein Identification J. Proteome Res. 2015, 14, 3452 10.1021/acs.jproteome.5b00499
-
(2015)
J. Proteome Res.
, vol.14
, pp. 3452
-
-
Omenn, G.S.1
Lane, L.2
Lundberg, E.K.3
Beavis, R.C.4
Nesvizhskii, A.I.5
Deutsch, E.W.6
-
3
-
-
84891791841
-
The Vertebrate Genome Annotation browser 10 years on
-
Harrow, J. L.; Steward, C. A.; Frankish, A.; Gilbert, J. G.; Gonzalez, J. M.; Loveland, J. E.; Mudge, J.; Sheppard, D.; Thomas, M.; Trevanion, S. et al. The Vertebrate Genome Annotation browser 10 years on Nucleic Acids Res. 2014, 42, D771-D779 10.1093/nar/gkt1241
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D771-D779
-
-
Harrow, J.L.1
Steward, C.A.2
Frankish, A.3
Gilbert, J.G.4
Gonzalez, J.M.5
Loveland, J.E.6
Mudge, J.7
Sheppard, D.8
Thomas, M.9
Trevanion, S.10
-
4
-
-
84941060754
-
The neXtProt knowledgebase on human proteins: Current status
-
Gaudet, P.; Michel, P.-A.; Zahn-Zabal, M.; Cusin, I.; Duek, P. D.; Evalet, O.; Gateau, A.; Gleizes, A.; Pereira, M.; Teixeira, D. et al. The neXtProt knowledgebase on human proteins: current status Nucleic Acids Res. 2015, 43, D764-D770 10.1093/nar/gku1178
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D764-D770
-
-
Gaudet, P.1
Michel, P.-A.2
Zahn-Zabal, M.3
Cusin, I.4
Duek, P.D.5
Evalet, O.6
Gateau, A.7
Gleizes, A.8
Pereira, M.9
Teixeira, D.10
-
5
-
-
84891767394
-
RefSeq: An update on mammalian reference sequences
-
Pruitt, K. D.; Brown, G. R.; Hiatt, S. M.; Thibaud-Nissen, F.; Astashyn, A.; Ermolaeva, O.; Farrell, C. M.; Hart, J.; Landrum, M. J.; McGarvey, K. M. et al. RefSeq: an update on mammalian reference sequences Nucleic Acids Res. 2014, 42, D756-D763 10.1093/nar/gkt1114
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D756-D763
-
-
Pruitt, K.D.1
Brown, G.R.2
Hiatt, S.M.3
Thibaud-Nissen, F.4
Astashyn, A.5
Ermolaeva, O.6
Farrell, C.M.7
Hart, J.8
Landrum, M.J.9
McGarvey, K.M.10
-
6
-
-
84946069451
-
UniProt: A hub for protein information
-
The UniProt Consortium
-
The UniProt Consortium UniProt: a hub for protein information Nucleic Acids Res. 2015, 43, D204-D212 10.1093/nar/gku989
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D204-D212
-
-
-
7
-
-
84865760395
-
GENCODE: The reference human genome annotation for the ENCODE Project
-
Harrow, J.; Frankish, A.; Gonzalez, J. M.; Tapanari, E.; Diekhans, M.; Kokocinski, F.; Aken, B. L.; Barrell, D.; Zadissa, A.; Searle, S. et al. GENCODE: the reference human genome annotation for The ENCODE Project Genome Res. 2012, 22, 1760-1774 10.1101/gr.135350.111
-
(2012)
Genome Res.
, vol.22
, pp. 1760-1774
-
-
Harrow, J.1
Frankish, A.2
Gonzalez, J.M.3
Tapanari, E.4
Diekhans, M.5
Kokocinski, F.6
Aken, B.L.7
Barrell, D.8
Zadissa, A.9
Searle, S.10
-
8
-
-
84941044607
-
Genenames.org: The HGNC resources in 2015
-
Gray, K. A.; Yates, B.; Seal, R. L.; Wright, M. W.; Bruford, E. A. Genenames.org: the HGNC resources in 2015 Nucleic Acids Res. 2015, 43, D1079-D1085 10.1093/nar/gku1071
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D1079-D1085
-
-
Gray, K.A.1
Yates, B.2
Seal, R.L.3
Wright, M.W.4
Bruford, E.A.5
-
9
-
-
84881475940
-
The CRAPome: A contaminant repository for affinity purification-mass spectrometry data
-
Mellacheruvu, D.; Wright, Z.; Couzens, A. L.; Lambert, J.-P.; St-Denis, N. A.; Li, T.; Miteva, Y. V.; Hauri, S.; Sardiu, M. E.; Low, T. Y. et al. The CRAPome: a contaminant repository for affinity purification-mass spectrometry data Nat. Methods 2013, 10, 730-736 10.1038/nmeth.2557
-
(2013)
Nat. Methods
, vol.10
, pp. 730-736
-
-
Mellacheruvu, D.1
Wright, Z.2
Couzens, A.L.3
Lambert, J.-P.4
St-Denis, N.A.5
Li, T.6
Miteva, Y.V.7
Hauri, S.8
Sardiu, M.E.9
Low, T.Y.10
-
10
-
-
84901611036
-
Mass-spectrometry-based draft of the human proteome
-
Wilhelm, M.; Schlegl, J.; Hahne, H.; Gholami, A. M.; Lieberenz, M.; Savitski, M. M.; Ziegler, E.; Butzmann, L.; Gessulat, S.; Marx, H. et al. Mass-spectrometry-based draft of the human proteome Nature 2014, 509, 582-587 10.1038/nature13319
-
(2014)
Nature
, vol.509
, pp. 582-587
-
-
Wilhelm, M.1
Schlegl, J.2
Hahne, H.3
Gholami, A.M.4
Lieberenz, M.5
Savitski, M.M.6
Ziegler, E.7
Butzmann, L.8
Gessulat, S.9
Marx, H.10
-
11
-
-
84901599553
-
A draft map of the human proteome
-
Kim, M.-S.; Pinto, S. M.; Getnet, D.; Nirujogi, R. S.; Manda, S. S.; Chaerkady, R.; Madugundu, A. K.; Kelkar, D. S.; Isserlin, R.; Jain, S. et al. A draft map of the human proteome Nature 2014, 509, 575-581 10.1038/nature13302
-
(2014)
Nature
, vol.509
, pp. 575-581
-
-
Kim, M.-S.1
Pinto, S.M.2
Getnet, D.3
Nirujogi, R.S.4
Manda, S.S.5
Chaerkady, R.6
Madugundu, A.K.7
Kelkar, D.S.8
Isserlin, R.9
Jain, S.10
-
12
-
-
84905372152
-
Analyzing the first drafts of the human proteome
-
Ezkurdia, I.; Vázquez, J.; Valencia, A.; Tress, M. Analyzing the first drafts of the human proteome J. Proteome Res. 2014, 13, 3854-3855 10.1021/pr500572z
-
(2014)
J. Proteome Res.
, vol.13
, pp. 3854-3855
-
-
Ezkurdia, I.1
Vázquez, J.2
Valencia, A.3
Tress, M.4
-
13
-
-
84941031116
-
The State of the Human Proteome in 2014/2015 as viewed through PeptideAtlas: Enhancing accuracy and coverage through the AtlasProphet
-
Deutsch, E. W.; Sun, Z.; Campbell, D.; Kusebauch, U.; Chu, C. S.; Mendoza, L.; Shteynberg, D.; Omenn, G. S.; Moritz, R. L. The State of the Human Proteome in 2014/2015 as viewed through PeptideAtlas: enhancing accuracy and coverage through the AtlasProphet J. Proteome Res. 2015, 14, 3461 10.1021/acs.jproteome.5b00500
-
(2015)
J. Proteome Res.
, vol.14
, pp. 3461
-
-
Deutsch, E.W.1
Sun, Z.2
Campbell, D.3
Kusebauch, U.4
Chu, C.S.5
Mendoza, L.6
Shteynberg, D.7
Omenn, G.S.8
Moritz, R.L.9
-
14
-
-
84919424223
-
Extensive translation of small Open Reading Frames revealed by Poly-Ribo-Seq
-
Aspden, J. L.; Eyre-Walker, Y. C.; Phillips, R. J.; Amin, U.; Mumtaz, M. A. S.; Brocard, M.; Couso, J.-P. Extensive translation of small Open Reading Frames revealed by Poly-Ribo-Seq eLife 2014, 3, e03528 10.7554/eLife.03528
-
(2014)
ELife
, vol.3
, pp. e03528
-
-
Aspden, J.L.1
Eyre-Walker, Y.C.2
Phillips, R.J.3
Amin, U.4
Mumtaz, M.A.S.5
Brocard, M.6
Couso, J.-P.7
-
15
-
-
84907267727
-
Comparative analysis of pseudogenes across three phyla
-
Sisu, C.; Pei, B.; Leng, J.; Frankish, A.; Zhang, Y.; Balasubramanian, S.; Harte, R.; Wang, D.; Rutenberg-Schoenberg, M.; Clark, W. et al. Comparative analysis of pseudogenes across three phyla Proc. Natl. Acad. Sci. U. S. A. 2014, 111, 13361-13366 10.1073/pnas.1407293111
-
(2014)
Proc. Natl. Acad. Sci. U. S. A.
, vol.111
, pp. 13361-13366
-
-
Sisu, C.1
Pei, B.2
Leng, J.3
Frankish, A.4
Zhang, Y.5
Balasubramanian, S.6
Harte, R.7
Wang, D.8
Rutenberg-Schoenberg, M.9
Clark, W.10
-
16
-
-
79955555530
-
Shotgun proteomics AIDS discovery of novel protein-coding genes, alternative splicing, and resurrected pseudogenes in the mouse genome
-
Brosch, M.; Saunders, G. I.; Frankish, A.; Collins, M. O.; Yu, L.; Wright, J.; Verstraten, R.; Adams, D. J.; Harrow, J.; Choudhary, J. S. et al. Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and resurrected pseudogenes in the mouse genome Genome Res. 2011, 21, 756-767 10.1101/gr.114272.110
-
(2011)
Genome Res.
, vol.21
, pp. 756-767
-
-
Brosch, M.1
Saunders, G.I.2
Frankish, A.3
Collins, M.O.4
Yu, L.5
Wright, J.6
Verstraten, R.7
Adams, D.J.8
Harrow, J.9
Choudhary, J.S.10
-
17
-
-
84922984420
-
Unexpected selection to retain high GC content and splicing enhancers within exons of multiexonic lncRNA loci
-
Haerty, W.; Ponting, C. P. Unexpected selection to retain high GC content and splicing enhancers within exons of multiexonic lncRNA loci RNA 2015, 21, 320-332 10.1261/rna.047324.114
-
(2015)
RNA
, vol.21
, pp. 320-332
-
-
Haerty, W.1
Ponting, C.P.2
-
18
-
-
84879969127
-
Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins
-
Guttman, M.; Russell, P.; Ingolia, N. T.; Weissman, J. S.; Lander, E. S. Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins Cell 2013, 154, 240-251 10.1016/j.cell.2013.06.009
-
(2013)
Cell
, vol.154
, pp. 240-251
-
-
Guttman, M.1
Russell, P.2
Ingolia, N.T.3
Weissman, J.S.4
Lander, E.S.5
-
19
-
-
84926524893
-
Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing
-
Clark, M. B.; Mercer, T. R.; Bussotti, G.; Leonardi, T.; Haynes, K. R.; Crawford, J.; Brunck, M. E.; Cao, K.-A. L.; Thomas, G. P.; Chen, W. Y. et al. Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing Nat. Methods 2015, 12, 339-342 10.1038/nmeth.3321
-
(2015)
Nat. Methods
, vol.12
, pp. 339-342
-
-
Clark, M.B.1
Mercer, T.R.2
Bussotti, G.3
Leonardi, T.4
Haynes, K.R.5
Crawford, J.6
Brunck, M.E.7
Cao, K.-A.L.8
Thomas, G.P.9
Chen, W.Y.10
-
20
-
-
84946086288
-
An update on LNCipedia: A database for annotated human lncRNA sequences
-
Volders, P.-J.; Verheggen, K.; Menschaert, G.; Vandepoele, K.; Martens, L.; Vandesompele, J.; Mestdagh, P. An update on LNCipedia: a database for annotated human lncRNA sequences Nucleic Acids Res. 2015, 43 (Database issue) D174-D180 10.1093/nar/gku1060
-
(2015)
Nucleic Acids Res.
, vol.43
, Issue.DATABASE ISSUE
, pp. D174-D180
-
-
Volders, P.-J.1
Verheggen, K.2
Menschaert, G.3
Vandepoele, K.4
Martens, L.5
Vandesompele, J.6
Mestdagh, P.7
-
21
-
-
84941032298
-
IMGT®, the international ImMunoGeneTics information system® 25 years on
-
Lefranc, M.-P.; Giudicelli, V.; Duroux, P.; Jabado-Michaloud, J.; Folch, G.; Aouinti, S.; Carillon, E.; Duvergey, H.; Houles, A.; Paysan-Lafosse, T. et al. IMGT®, the international ImMunoGeneTics information system® 25 years on Nucleic Acids Res. 2015, 43, D413-D422 10.1093/nar/gku1056
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D413-D422
-
-
Lefranc, M.-P.1
Giudicelli, V.2
Duroux, P.3
Jabado-Michaloud, J.4
Folch, G.5
Aouinti, S.6
Carillon, E.7
Duvergey, H.8
Houles, A.9
Paysan-Lafosse, T.10
-
22
-
-
84928007890
-
HERV-K(HML-2) rec and np9 transcripts not restricted to disease but present in many normal human tissues
-
Schmitt, K.; Heyne, K.; Roemer, K.; Meese, E.; Mayer, J. HERV-K(HML-2) rec and np9 transcripts not restricted to disease but present in many normal human tissues Mobile DNA 2015, 6, 4 10.1186/s13100-015-0035-7
-
(2015)
Mobile DNA
, vol.6
, pp. 4
-
-
Schmitt, K.1
Heyne, K.2
Roemer, K.3
Meese, E.4
Mayer, J.5
-
23
-
-
84884770765
-
HORDE: Comprehensive resource for olfactory receptor genomics
-
Olender, T.; Nativ, N.; Lancet, D. HORDE: comprehensive resource for olfactory receptor genomics Methods Mol. Biol. 2013, 1003, 23-38 10.1007/978-1-62703-377-0-2
-
(2013)
Methods Mol. Biol.
, vol.1003
, pp. 23-38
-
-
Olender, T.1
Nativ, N.2
Lancet, D.3
-
24
-
-
84891777450
-
Current status and new features of the Consensus Coding Sequence database
-
Farrell, C. M.; O'Leary, N. A.; Harte, R. A.; Loveland, J. E.; Wilming, L. G.; Wallin, C.; Diekhans, M.; Barrell, D.; Searle, S. M. J.; Aken, B. et al. Current status and new features of the Consensus Coding Sequence database Nucleic Acids Res. 2014, 42, D865-D872 10.1093/nar/gkt1059
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D865-D872
-
-
Farrell, C.M.1
O'Leary, N.A.2
Harte, R.A.3
Loveland, J.E.4
Wilming, L.G.5
Wallin, C.6
Diekhans, M.7
Barrell, D.8
Searle, S.M.J.9
Aken, B.10
|