-
1
-
-
3242730459
-
Management and prevention of SARS in China
-
Zhong, N. Management and prevention of SARS in China. Philos. Trans. R. Soc. Lond. B Biol. Sci. 2004, 359, 1115–1116.
-
(2004)
Philos. Trans. R. Soc. Lond. B Biol. Sci.
, vol.359
, pp. 1115-1116
-
-
Zhong, N.1
-
2
-
-
10944238037
-
Severe acute respiratory syndrome
-
Peiris, S.J.; Guan, Y.; Yuen, K.Y. Severe acute respiratory syndrome. Nat. Med. 2004, 10 (Suppl. 12), S88–S97.
-
(2004)
Nat. Med.
, vol.10
, Issue.12
, pp. S88-S97
-
-
Peiris, S.J.1
Guan, Y.2
Yuen, K.Y.3
-
3
-
-
7744242138
-
The chronology of the 2002–2003 SARS mini pandemic
-
Cherry, J.D. The chronology of the 2002–2003 SARS mini pandemic. Paediatr. Respir. Rev. 2004, 5, 262–269.
-
(2004)
Paediatr. Respir. Rev.
, vol.5
, pp. 262-269
-
-
Cherry, J.D.1
-
4
-
-
25444531712
-
Severe acute respiratory syndrome coronavirus-like virus in Chinese horseshoe bats
-
Lau, S.K.; Woo, P.C.; Li, K.S.; Huang, Y.; Tsoi, H.W.; Wong, B.H.; Wong, S.S.; Leung, S.Y.; Chan, K.H.; Yuen, K.Y. Severe acute respiratory syndrome coronavirus-like virus in Chinese horseshoe bats. Proc. Natl. Acad. Sci. USA 2005, 102, 14040–14045.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 14040-14045
-
-
Lau, S.K.1
Woo, P.C.2
Li, K.S.3
Huang, Y.4
Tsoi, H.W.5
Wong, B.H.6
Wong, S.S.7
Leung, S.Y.8
Chan, K.H.9
Yuen, K.Y.10
-
5
-
-
84962487236
-
SARS-like WIV1-CoV poised for human emergence
-
Menachery, V.D.; Yount, B.L., Jr.; Sims, A.C.; Debbink, K.; Agnihothram, S.S.; Gralinski, L.E.; Graham, R.L.; Scobey, T.; Plante, J.A.; Royal, S.R., et al.; SARS-like WIV1-CoV poised for human emergence. Proc. Natl. Acad. Sci. USA 2016, 113, 3048–3053.
-
(2016)
Proc. Natl. Acad. Sci. USA
, vol.113
, pp. 3048-3053
-
-
Menachery, V.D.1
Yount, B.L.2
Sims, A.C.3
Debbink, K.4
Agnihothram, S.S.5
Gralinski, L.E.6
Graham, R.L.7
Scobey, T.8
Plante, J.A.9
Royal, S.R.10
-
6
-
-
84949623850
-
A SARS-like cluster of circulating bat coronaviruses shows potential for human emergence
-
Menachery, V.D.; Yount, B.L., Jr.; Debbink, K.; Agnihothram, S.; Gralinski, L.E.; Plante, J.A.; Graham, R.L.; Scobey, T.; Ge, X.Y.; Donaldson, E.F., et al.; A SARS-like cluster of circulating bat coronaviruses shows potential for human emergence. Nat. Med. 2015, 21, 1508–1513.
-
(2015)
Nat. Med.
, vol.21
, pp. 1508-1513
-
-
Menachery, V.D.1
Yount, B.L.2
Debbink, K.3
Agnihothram, S.4
Gralinski, L.E.5
Plante, J.A.6
Graham, R.L.7
Scobey, T.8
Ge, X.Y.9
Donaldson, E.F.10
-
7
-
-
84888011629
-
A decade after SARS: Strategies for controlling emerging coronaviruses
-
Graham, R.L.; Donaldson, E.F.; Baric, R.S. A decade after SARS: Strategies for controlling emerging coronaviruses. Nat. Rev. Microbiol. 2013, 11, 836–848.
-
(2013)
Nat. Rev. Microbiol.
, vol.11
, pp. 836-848
-
-
Graham, R.L.1
Donaldson, E.F.2
Baric, R.S.3
-
8
-
-
84880609399
-
Middle East respiratory syndrome coronavirus (MERS-CoV): Challenges in identifying its source and controlling its spread
-
Lu, L.; Liu, Q.; Du, L.; Jiang, S. Middle East respiratory syndrome coronavirus (MERS-CoV): Challenges in identifying its source and controlling its spread. Microbes Infect. 2013, 15, 625–629.
-
(2013)
Microbes Infect.
, vol.15
, pp. 625-629
-
-
Lu, L.1
Liu, Q.2
Du, L.3
Jiang, S.4
-
9
-
-
84976271703
-
SARS and MERS: Recent insights into emerging coronaviruses
-
De Wit, E.; van Doremalen, N.; Falzarano, D.; Munster, V.J. SARS and MERS: Recent insights into emerging coronaviruses. Nat. Rev. Microbiol. 2016, 14, 523–534.
-
(2016)
Nat. Rev. Microbiol.
, vol.14
, pp. 523-534
-
-
De Wit, E.1
Van Doremalen, N.2
Falzarano, D.3
Munster, V.J.4
-
10
-
-
0042427333
-
Severe acute respiratory syndrome: Identification of the etiological agent
-
Drosten, C.; Preiser, W.; Gunther, S.; Schmitz, H.; Doerr, H.W. Severe acute respiratory syndrome: Identification of the etiological agent. Trends Mol. Med. 2003, 9, 325–327.
-
(2003)
Trends Mol. Med.
, vol.9
, pp. 325-327
-
-
Drosten, C.1
Preiser, W.2
Gunther, S.3
Schmitz, H.4
Doerr, H.W.5
-
11
-
-
84870946428
-
Live, impaired-fidelity coronavirus vaccine protects in an aged, immunocompromised mouse model of lethal disease
-
Graham, R.L.; Becker, M.M.; Eckerle, L.D.; Bolles, M.; Denison, M.R.; Baric, R.S. A live, impaired-fidelity coronavirus vaccine protects in an aged, immunocompromised mouse model of lethal disease. Nat. Med. 2012, 18, 1820–1826.
-
(2012)
Nat. Med.
, vol.18
, pp. 1820-1826
-
-
Graham, R.L.1
Becker, M.M.2
Eckerle, L.D.3
Bolles, M.4
Denison, M.R.5
Baric, R.6
-
12
-
-
84862895252
-
SARS coronavirus pathogenesis: Host innate immune responses and viral antagonism of interferon
-
Totura, A.L.; Baric, R.S. SARS coronavirus pathogenesis: Host innate immune responses and viral antagonism of interferon. Curr. Opin. Virol. 2012, 2, 264–275.
-
(2012)
Curr. Opin. Virol.
, vol.2
, pp. 264-275
-
-
Totura, A.L.1
Baric, R.S.2
-
13
-
-
77954066406
-
SARS-CoV pathogenesis is regulated by a STAT1 dependent but a type I, II and III interferon receptor independent mechanism
-
Frieman, M.B.; Chen, J.; Morrison, T.E.; Whitmore, A.; Funkhouser, W.; Ward, J.M.; Lamirande, E.W.; Roberts, A.; Heise, M.; Subbarao, K., et al.; SARS-CoV pathogenesis is regulated by a STAT1 dependent but a type I, II and III interferon receptor independent mechanism. PLoS Pathog. 2010, 6, e1000849.
-
(2010)
Plos Pathog
, vol.6
-
-
Frieman, M.B.1
Chen, J.2
Morrison, T.E.3
Whitmore, A.4
Funkhouser, W.5
Ward, J.M.6
Lamirande, E.W.7
Roberts, A.8
Heise, M.9
Subbarao, K.10
-
14
-
-
58149234374
-
MyD88 is required for protection from lethal infection with a mouse-adapted SARS-CoV
-
Sheahan, T.; Morrison, T.E.; Funkhouser, W.; Uematsu, S.; Akira, S.; Baric, R.S.; Heise, M.T. MyD88 is required for protection from lethal infection with a mouse-adapted SARS-CoV. PLoS Pathog. 2008, 4, e1000240.
-
(2008)
Plos Pathog.
, vol.4
-
-
Sheahan, T.1
Morrison, T.E.2
Funkhouser, W.3
Uematsu, S.4
Akira, S.5
Baric, R.S.6
Heise, M.T.7
-
15
-
-
33846886363
-
Control of coronavirus infection through plasmacytoid dendritic-cell-derived type I interferon
-
Cervantes-Barragan, L.; Zust, R.; Weber, F.; Spiegel, M.; Lang, K.S.; Akira, S.; Thiel, V.; Ludewig, B. Control of coronavirus infection through plasmacytoid dendritic-cell-derived type I interferon. Blood 2007, 109, 1131–1137.
-
(2007)
Blood
, vol.109
, pp. 1131-1137
-
-
Cervantes-Barragan, L.1
Zust, R.2
Weber, F.3
Spiegel, M.4
Lang, K.S.5
Akira, S.6
Thiel, V.7
Ludewig, B.8
-
16
-
-
85013715067
-
Toll-like receptor 3 signaling via TRIF contributes to a protective innate immune response to severe acute respiratory syndrome coronavirus infection
-
Totura, A.L.; Whitmore, A.; Agnihothram, S.; Schafer, A.; Katze, M.G.; Heise, M.T.; Baric, R.S. Toll-like receptor 3 signaling via TRIF contributes to a protective innate immune response to severe acute respiratory syndrome coronavirus infection. MBio 2015, 6, e00638–e00615.
-
(2015)
Mbio
, vol.6
, pp. e00638-e00615
-
-
Totura, A.L.1
Whitmore, A.2
Agnihothram, S.3
Schafer, A.4
Katze, M.G.5
Heise, M.T.6
Baric, R.S.7
-
17
-
-
84949895415
-
MDA5 Is Critical to host defense during infection with murine coronavirus
-
Zalinger, Z.B.; Elliott, R.; Rose, K.M.; Weiss, S.R. MDA5 Is Critical to host defense during infection with murine coronavirus. J. Virol. 2015, 89, 12330–12340.
-
(2015)
J. Virol
, vol.89
, pp. 12330-12340
-
-
Zalinger, Z.B.1
Elliott, R.2
Rose, K.M.3
Weiss, S.R.4
-
18
-
-
84904015653
-
Pathogenic influenza viruses and coronaviruses utilize similar and contrasting approaches to control interferon-stimulated gene responses
-
Menachery, V.D.; Eisfeld, A.J.; Schafer, A.; Josset, L.; Sims, A.C.; Proll, S.; Fan, S.; Li, C.; Neumann, G.; Tilton, S.C., et al.; Pathogenic influenza viruses and coronaviruses utilize similar and contrasting approaches to control interferon-stimulated gene responses. MBio 2014, 5, e01174–e01114.
-
(2014)
Mbio
, vol.5
, pp. e01174-e01114
-
-
Menachery, V.D.1
Eisfeld, A.J.2
Schafer, A.3
Josset, L.4
Sims, A.C.5
Proll, S.6
Fan, S.7
Li, C.8
Neumann, G.9
Tilton, S.C.10
-
19
-
-
84938521107
-
The SARS coronavirus papain like protease can inhibit IRF3 at a post activation step that requires deubiquitination activity
-
Matthews, K.; Schafer, A.; Pham, A.; Frieman, M. The SARS coronavirus papain like protease can inhibit IRF3 at a post activation step that requires deubiquitination activity. Virol. J. 2014, 11, 209.
-
(2014)
Virol. J.
, vol.11
-
-
Matthews, K.1
Schafer, A.2
Pham, A.3
Frieman, M.4
-
20
-
-
84860338702
-
Characterization of acute renal allograft rejection by proteomic analysis of renal tissue in rat
-
Chen, G.; Huang, J.B.; Mi, J.; He, Y.F.; Wu, X.H.; Luo, C.L.; Liang, S.M.; Li, J.B.; Tang, Y.X.; Li, J. Characterization of acute renal allograft rejection by proteomic analysis of renal tissue in rat. Mol. Biol. Rep. 2012, 39, 1315–1322.
-
(2012)
Mol. Biol. Rep.
, vol.39
, pp. 1315-1322
-
-
Chen, G.1
Huang, J.B.2
Mi, J.3
He, Y.F.4
Wu, X.H.5
Luo, C.L.6
Liang, S.M.7
Li, J.B.8
Tang, Y.X.9
Li, J.10
-
21
-
-
84875546545
-
Release of severe acute respiratory syndrome coronavirus nuclear import block enhances host transcription in human lung cells
-
Sims, A.C.; Tilton, S.C.; Menachery, V.D.; Gralinski, L.E.; Schafer, A.; Matzke, M.M.; Webb-Robertson, B.J.; Chang, J.; Luna, M.L.; Long, C.E., et al.; Release of severe acute respiratory syndrome coronavirus nuclear import block enhances host transcription in human lung cells. J. Virol. 2013, 87, 3885–3902.
-
(2013)
J. Virol.
, vol.87
, pp. 3885-3902
-
-
Sims, A.C.1
Tilton, S.C.2
Menachery, V.D.3
Gralinski, L.E.4
Schafer, A.5
Matzke, M.M.6
Webb-Robertson, B.J.7
Chang, J.8
Luna, M.L.9
Long, C.E.10
-
22
-
-
84896981937
-
Attenuation and restoration of severe acute respiratory syndrome coronavirus mutant lacking 2′-O-methyltransferase activity
-
MMenachery, V.D.; Yount, B.L., Jr.; Josset, L.; Gralinski, L.E.; Scobey, T.; Agnihothram, S.; Katze, M.G.; Baric, R.S. Attenuation and restoration of severe acute respiratory syndrome coronavirus mutant lacking 2′-O-methyltransferase activity. J. Virol. 2014, 88, 4251–4264.
-
(2014)
J. Virol.
, vol.88
, pp. 4251-4264
-
-
Mmenachery, V.D.1
Yount, B.L.2
Josset, L.3
Gralinski, L.E.4
Scobey, T.5
Agnihothram, S.6
Katze, M.G.7
Baric, R.S.8
-
23
-
-
78549284909
-
2′-O-methylation of the viral mRNA cap evades host restriction by IFIT family members
-
Daffis, S.; Szretter, K.J.; Schriewer, J.; Li, J.; Youn, S.; Errett, J.; Lin, T.Y.; Schneller, S.; Zust, R.; Dong, H, et al.; 2′-O-methylation of the viral mRNA cap evades host restriction by IFIT family members. Nature 2010, 468, 452–456.
-
(2010)
Nature
, vol.468
, pp. 452-456
-
-
Daffis, S.1
Szretter, K.J.2
Schriewer, J.3
Li, J.4
Youn, S.5
Errett, J.6
Lin, T.Y.7
Schneller, S.8
Zust, R.9
Dong, H.10
-
24
-
-
14744271444
-
Single-amino-acid substitutions in open reading frame (ORF) 1b-nsp14 and ORF 2a proteins of the coronavirus mouse hepatitis virus are attenuating in mice
-
Sperry, S.M.; Kazi, L.; Graham, R.L.; Baric, R.S.; Weiss, S.R.; Denison, M.R. Single-amino-acid substitutions in open reading frame (ORF) 1b-nsp14 and ORF 2a proteins of the coronavirus mouse hepatitis virus are attenuating in mice. J. Virol. 2005, 79, 3391–3400.
-
(2005)
J. Virol.
, vol.79
, pp. 3391-3400
-
-
Sperry, S.M.1
Kazi, L.2
Graham, R.L.3
Baric, R.S.4
Weiss, S.R.5
Denison, M.R.6
-
25
-
-
84971393087
-
Mutagenesis of coronavirus nsp14 reveals its potential role in modulation of the innate immune response
-
Becares, M.; Pascual-Iglesias, A.; Nogales, A.; Sola, I.; Enjuanes, L.; Zuniga, S. Mutagenesis of coronavirus nsp14 reveals its potential role in modulation of the innate immune response. J. Virol. 2016, 90, 5399–5414.
-
(2016)
J. Virol
, vol.90
, pp. 5399-5414
-
-
Becares, M.1
Pascual-Iglesias, A.2
Nogales, A.3
Sola, I.4
Enjuanes, L.5
Zuniga, S.6
-
26
-
-
0028086160
-
Mouse hepatitis virus gene 5b protein is a new virion envelope protein
-
Yu, X.; Bi, W.; Weiss, S.R.; Leibowitz, J.L. Mouse hepatitis virus gene 5b protein is a new virion envelope protein. Virology 1994, 202, 1018–1023.
-
(1994)
Virology
, vol.202
, pp. 1018-1023
-
-
Yu, X.1
Bi, W.2
Weiss, S.R.3
Leibowitz, J.L.4
-
27
-
-
84897055458
-
The ORF4b-encoded accessory proteins of Middle East respiratory syndrome coronavirus and two related bat coronaviruses localize to the nucleus and inhibit innate immune signalling
-
Matthews, K.L.; Coleman, C.M.; van der Meer, Y.; Snijder, E.J.; Frieman, M.B. The ORF4b-encoded accessory proteins of Middle East respiratory syndrome coronavirus and two related bat coronaviruses localize to the nucleus and inhibit innate immune signalling. J. Gen. Virol. 2014, 95 Pt 4, 874–882.
-
J. Gen. Virol.
, vol.4
, pp. 874-882
-
-
Matthews, K.L.1
Coleman, C.M.2
Van Der Meer, Y.3
Snijder, E.J.4
Frieman, M.B.5
-
28
-
-
84885038468
-
Reverse genetics with a full-length infectious cDNA of the Middle East respiratory syndrome coronavirus
-
Scobey, T.; Yount, B.L.; Sims, A.C.; Donaldson, E.F.; Agnihothram, S.S.; Menachery, V.D.; Graham, R.L.; Swanstrom, J.; Bove, P.F.; Kim, J.D., et al.; Reverse genetics with a full-length infectious cDNA of the Middle East respiratory syndrome coronavirus. Proc. Natl. Acad. Sci. USA 2013, 110, 16157–16162.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 16157-16162
-
-
Scobey, T.1
Yount, B.L.2
Sims, A.C.3
Donaldson, E.F.4
Agnihothram, S.S.5
Menachery, V.D.6
Graham, R.L.7
Swanstrom, J.8
Bove, P.F.9
Kim, J.D.10
-
29
-
-
84965112401
-
Middle East respiratory syndrome coronavirus NS4b protein inhibits host RNase L activation
-
Thornbrough, J.M.; Jha, B.K.; Yount, B.; Goldstein, S.A.; Li, Y.; Elliott, R.; Sims, A.C.; Baric, R.S.; Silverman, R.H.; Weiss, S.R. Middle East respiratory syndrome coronavirus NS4b protein inhibits host RNase L activation. MBio 2016, 7, e00258.
-
(2016)
Mbio
, vol.7
-
-
Thornbrough, J.M.1
Jha, B.K.2
Yount, B.3
Goldstein, S.A.4
Li, Y.5
Elliott, R.6
Sims, A.C.7
Baric, R.S.8
Silverman, R.H.9
Weiss, S.R.10
-
30
-
-
84992694820
-
Middle East respiratory coronavirus accessory protein 4a inhibits PKR-mediated antiviral stress responses
-
Rabouw, H.H.; Langereis, M.A.; Knaap, R.C.; Dalebout, T.J.; Canton, J.; Sola, I.; Enjuanes, L.; Bredenbeek, P.J.; Kikkert, M.; de Groot, R.J., et al.; Middle East respiratory coronavirus accessory protein 4a inhibits PKR-mediated antiviral stress responses. PLoS Pathog. 2016, 12, e1005982.
-
(2016)
Plos Pathog
, vol.12
-
-
Rabouw, H.H.1
Langereis, M.A.2
Knaap, R.C.3
Dalebout, T.J.4
Canton, J.5
Sola, I.6
Enjuanes, L.7
Bredenbeek, P.J.8
Kikkert, M.9
De Groot, R.J.10
-
31
-
-
84862777909
-
Suppression of the antiviral response by an influenza histone mimic
-
Marazzi, I.; Ho, J.S.; Kim, J.; Manicassamy, B.; Dewell, S.; Albrecht, R.A.; Seibert, C.W.; Schaefer, U.; Jeffrey, K.L.; Prinjha, R.K., et al.; Suppression of the antiviral response by an influenza histone mimic. Nature 2012, 483, 428–433.
-
(2012)
Nature
, vol.483
, pp. 428-433
-
-
Marazzi, I.1
Ho, J.S.2
Kim, J.3
Manicassamy, B.4
Dewell, S.5
Albrecht, R.A.6
Seibert, C.W.7
Schaefer, U.8
Jeffrey, K.L.9
Prinjha, R.K.10
-
32
-
-
33847047461
-
Epigenetics: A landscape takes shape
-
Goldberg, A.D.; Allis, C.D.; Bernstein, E. Epigenetics: A landscape takes shape. Cell 2007, 128, 635–638.
-
(2007)
Cell
, vol.128
, pp. 635-638
-
-
Goldberg, A.D.1
Allis, C.D.2
Bernstein, E.3
-
33
-
-
34249337761
-
Perceptions of epigenetics
-
Bird, A. Perceptions of epigenetics. Nature 2007, 447, 396–398.
-
(2007)
Nature
, vol.447
, pp. 396-398
-
-
Bird, A.1
-
34
-
-
40849139208
-
Epigenetics in cancer
-
Esteller, M. Epigenetics in cancer. N. Engl. J. Med. 2008, 358, 1148–1159.
-
(2008)
N. Engl. J. Med.
, vol.358
, pp. 1148-1159
-
-
Esteller, M.1
-
35
-
-
84925081423
-
Epigenetic modifications of the immune system in health and disease
-
Obata, Y.; Furusawa, Y.; Hase, K. Epigenetic modifications of the immune system in health and disease. Immunol. Cell Biol. 2015, 93, 226–232.
-
(2015)
Immunol. Cell Biol.
, vol.93
, pp. 226-232
-
-
Obata, Y.1
Furusawa, Y.2
Hase, K.3
-
37
-
-
0037432755
-
The Human Genome Project: Lessons from large-scale biology
-
Collins, F.S.; Morgan, M.; Patrinos, A. The Human Genome Project: Lessons from large-scale biology. Science 2003, 300, 286–290.
-
(2003)
Science
, vol.300
, pp. 286-290
-
-
Collins, F.S.1
Morgan, M.2
Patrinos, A.3
-
38
-
-
84884829249
-
Mapping human epigenomes
-
Rivera, C.M.; Ren, B. Mapping human epigenomes. Cell 2013, 155, 39–55.
-
(2013)
Cell
, vol.155
, pp. 39-55
-
-
Rivera, C.M.1
Ren, B.2
-
39
-
-
37749031255
-
Next-generation sequencing transforms today’s biology
-
Schuster, S.C. Next-generation sequencing transforms today’s biology. Nat. Methods 2008, 5, 16–18.
-
(2008)
Nat. Methods
, vol.5
, pp. 16-18
-
-
Schuster, S.C.1
-
40
-
-
79960556965
-
Epigenome-wide association studies for common human diseases
-
Rakyan, V.K.; Down, T.A.; Balding, D.J.; Beck, S. Epigenome-wide association studies for common human diseases. Nat. Rev. Genet. 2011, 12, 529–541.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 529-541
-
-
Rakyan, V.K.1
Down, T.A.2
Balding, D.J.3
Beck, S.4
-
41
-
-
84977481546
-
Epigenome-wide Association Studies and the Interpretation of Disease-Omics
-
Birney, E.; Smith, G.D.; Greally, J.M. Epigenome-wide Association Studies and the Interpretation of Disease-Omics. PLoS Genet. 2016, 12, e1006105.
-
(2016)
Plos Genet.
, vol.12
-
-
Birney, E.1
Smith, G.D.2
Greally, J.M.3
-
42
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
Consortium, E.P.; Birney, E.; Stamatoyannopoulos, J.A.; Dutta, A.; Guigo, R.; Gingeras, T.R.; Margulies, E.H.; Weng, Z.; Snyder, M.; Dermitzakis, E.T., et al.; Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 2007, 447, 799–816.
-
(2007)
Nature
, vol.447
, pp. 799-816
-
-
Consortium, E.P.1
Birney, E.2
Stamatoyannopoulos, J.A.3
Dutta, A.4
Guigo, R.5
Gingeras, T.R.6
Margulies, E.H.7
Weng, Z.8
Snyder, M.9
Dermitzakis, E.T.10
-
43
-
-
79955550445
-
A user’s guide to the encyclopedia of DNA elements (ENCODE)
-
Consortium, E.P. A user’s guide to the encyclopedia of DNA elements (ENCODE). PLoS Biol. 2011, 9, e1001046.
-
(2011)
Plos Biol
, vol.9
-
-
Consortium, E.P.1
-
44
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
-
Derrien, T.; Johnson, R.; Bussotti, G.; Tanzer, A.; Djebali, S.; Tilgner, H.; Guernec, G.; Martin, D.; Merkel, A.; Knowles, D.G., et al.; The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression. Genome Res. 2012, 22, 1775–1789.
-
(2012)
Genome Res
, vol.22
, pp. 1775-1789
-
-
Derrien, T.1
Johnson, R.2
Bussotti, G.3
Tanzer, A.4
Djebali, S.5
Tilgner, H.6
Guernec, G.7
Martin, D.8
Merkel, A.9
Knowles, D.G.10
-
45
-
-
84865760395
-
GENCODE: The reference human genome annotation for The ENCODE Project
-
Harrow, J.; Frankish, A.; Gonzalez, J.M.; Tapanari, E.; Diekhans, M.; Kokocinski, F.; Aken, B.L.; Barrell, D.; Zadissa, A.; Searle, S., et al.; GENCODE: The reference human genome annotation for The ENCODE Project. Genome Res. 2012, 22, 1760–1774.
-
(2012)
Genome Res
, vol.22
, pp. 1760-1774
-
-
Harrow, J.1
Frankish, A.2
Gonzalez, J.M.3
Tapanari, E.4
Diekhans, M.5
Kokocinski, F.6
Aken, B.L.7
Barrell, D.8
Zadissa, A.9
Searle, S.10
-
46
-
-
77649252269
-
Visualization of Omics data for systems biology. Nat
-
Gehlenborg, N.; O’Donoghue, S.I.; Baliga, N.S.; Goesmann, A.; Hibbs, M.A.; Kitano, H.; Kohlbacher, O.; Neuweger, H.; Schneider, R.; Tenenbaum, D., et al.; Visualization of Omics data for systems biology. Nat. Methods 2010, 7 (Suppl. 3), S56–S68.
-
(2010)
Methods
, vol.7
, Issue.3
, pp. S56-S68
-
-
Gehlenborg, N.1
O’Donoghue, S.I.2
Baliga, N.S.3
Goesmann, A.4
Hibbs, M.A.5
Kitano, H.6
Kohlbacher, O.7
Neuweger, H.8
Schneider, R.9
Tenenbaum, D.10
-
47
-
-
85015069067
-
Controlling the double helix
-
Felsenfeld, G.; Groudine, M. Controlling the double helix. Nature 2003, 421, 448–453.
-
(2003)
Nature
, vol.421
, pp. 448-453
-
-
Felsenfeld, G.1
Groudine, M.2
-
48
-
-
0030956032
-
Histone structure and the organization of the nucleosome
-
Ramakrishnan, V. Histone structure and the organization of the nucleosome. Annu. Rev. Biophys. Biomol. Struct. 1997, 26, 83–112.
-
(1997)
Annu. Rev. Biophys. Biomol. Struct.
, vol.26
, pp. 83-112
-
-
Ramakrishnan, V.1
-
49
-
-
0034610814
-
The language of covalent histone modifications
-
Strahl, B.D.; Allis, C.D. The language of covalent histone modifications. Nature 2000, 403, 41–45.
-
(2000)
Nature
, vol.403
, pp. 41-45
-
-
Strahl, B.D.1
Allis, C.D.2
-
50
-
-
0035839136
-
Translating the histone code
-
Jenuwein, T.; Allis, C.D. Translating the histone code. Science 2001, 293, 1074–1080.
-
(2001)
Science
, vol.293
, pp. 1074-1080
-
-
Jenuwein, T.1
Allis, C.D.2
-
51
-
-
78650304236
-
Charting histone modifications and the functional organization of mammalian genomes
-
Zhou, V.W.; Goren, A.; Bernstein, B.E. Charting histone modifications and the functional organization of mammalian genomes. Nat. Rev. Genet. 2011, 12, 7–18.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 7-18
-
-
Zhou, V.W.1
Goren, A.2
Bernstein, B.E.3
-
52
-
-
33847032960
-
The mammalian epigenome
-
Bernstein, B.E.; Meissner, A.; Lander, E.S. The mammalian epigenome. Cell 2007, 128, 669–681.
-
(2007)
Cell
, vol.128
, pp. 669-681
-
-
Bernstein, B.E.1
Meissner, A.2
Lander, E.S.3
-
53
-
-
34249026300
-
High-resolution profiling of histone methylations in the human genome
-
Barski, A.; Cuddapah, S.; Cui, K.; Roh, T.Y.; Schones, D.E.; Wang, Z.; Wei, G.; Chepelev, I.; Zhao, K. High-resolution profiling of histone methylations in the human genome. Cell 2007, 129, 823–837.
-
(2007)
Cell
, vol.129
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
54
-
-
84899450857
-
Transcriptional enhancers: From properties to genome-wide predictions
-
Shlyueva, D.; Stampfel, G.; Stark, A. Transcriptional enhancers: From properties to genome-wide predictions. Nat. Rev. Genet. 2014, 15, 272–286.
-
(2014)
Nat. Rev. Genet.
, vol.15
, pp. 272-286
-
-
Shlyueva, D.1
Stampfel, G.2
Stark, A.3
-
55
-
-
33644909891
-
The promise of the health sciences in the 21st century
-
Bernstein, A. The promise of the health sciences in the 21st century. Nurs. Leadersh. (Tor Ont) 2005, 18, 41–43.
-
(2005)
Nurs. Leadersh. (Tor Ont)
, vol.18
, pp. 41-43
-
-
Bernstein, A.1
-
56
-
-
84877836392
-
Mechanisms by which transcription factors gain access to target sequence elements in chromatin
-
Guertin, M.J.; Lis, J.T. Mechanisms by which transcription factors gain access to target sequence elements in chromatin. Curr. Opin. Genet. Dev. 2013, 23, 116–123.
-
(2013)
Curr. Opin. Genet. Dev.
, vol.23
, pp. 116-123
-
-
Guertin, M.J.1
Lis, J.T.2
-
57
-
-
84879216186
-
Epigenetic regulation of inducible gene expression in the immune system
-
Lim, P.S.; Li, J.; Holloway, A.F.; Rao, S. Epigenetic regulation of inducible gene expression in the immune system. Immunology 2013, 139, 285–293.
-
(2013)
Immunology
, vol.139
, pp. 285-293
-
-
Lim, P.S.1
Li, J.2
Holloway, A.F.3
Rao, S.4
-
58
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein, B.E.; Mikkelsen, T.S.; Xie, X.; Kamal, M.; Huebert, D.J.; Cuff, J.; Fry, B.; Meissner, A.; Wernig, M.; Plath, K., et al.; A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 2006, 125, 315–326.
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
Mikkelsen, T.S.2
Xie, X.3
Kamal, M.4
Huebert, D.J.5
Cuff, J.6
Fry, B.7
Meissner, A.8
Wernig, M.9
Plath, K.10
-
59
-
-
77953747413
-
Tools and landscapes of epigenetics
-
Tarakhovsky, A. Tools and landscapes of epigenetics. Nat. Immunol. 2010, 11, 565–568.
-
(2010)
Nat. Immunol.
, vol.11
, pp. 565-568
-
-
Tarakhovsky, A.1
-
60
-
-
84899130088
-
Preparing the first responders: Building the inflammatory transcriptome from the ground up
-
Rogatsky, I.; Adelman, K. Preparing the first responders: Building the inflammatory transcriptome from the ground up. Mol. Cell 2014, 54, 245–254.
-
(2014)
Mol. Cell
, vol.54
, pp. 245-254
-
-
Rogatsky, I.1
Adelman, K.2
-
61
-
-
33847076849
-
Chromatin modifications and their function
-
Kouzarides, T. Chromatin modifications and their function. Cell 2007, 128, 693–705.
-
(2007)
Cell
, vol.128
, pp. 693-705
-
-
Kouzarides, T.1
-
62
-
-
84991585399
-
Organization and function of the 3D genome
-
Bonev, B.; Cavalli, G. Organization and function of the 3D genome. Nat. Rev. Genet. 2016, 17, 661–678.
-
(2016)
Nat. Rev. Genet.
, vol.17
, pp. 661-678
-
-
Bonev, B.1
Cavalli, G.2
-
63
-
-
84944751601
-
Functional coupling between writers, erasers and readers of histone and DNA methylation
-
Torres, I.O.; Fujimori, D.G. Functional coupling between writers, erasers and readers of histone and DNA methylation. Curr. Opin. Struct. Biol. 2015, 35, 68–75.
-
(2015)
Curr. Opin. Struct. Biol
, vol.35
, pp. 68-75
-
-
Torres, I.O.1
Fujimori, D.G.2
-
64
-
-
84863986133
-
Functions of DNA methylation: Islands, start sites, gene bodies and beyond
-
Jones, P.A. Functions of DNA methylation: Islands, start sites, gene bodies and beyond. Nat. Rev. Genet. 2012, 13, 484–492.
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 484-492
-
-
Jones, P.A.1
-
65
-
-
84869046975
-
DNA methyltransferases, DNA damage repair, and cancer
-
Jin, B.; Robertson, K.D. DNA methyltransferases, DNA damage repair, and cancer. Adv. Exp. Med. Biol. 2013, 754, 3–29.
-
(2013)
Adv. Exp. Med. Biol.
, vol.754
, pp. 3-29
-
-
Jin, B.1
Robertson, K.D.2
-
66
-
-
0037372003
-
Epigenetic regulation of gene expression: How the genome integrates intrinsic and environmental signals
-
Jaenisch, R.; Bird, A. Epigenetic regulation of gene expression: How the genome integrates intrinsic and environmental signals. Nat. Genet. 2003, 33, 245–254.
-
(2003)
Nat. Genet.
, vol.33
, pp. 245-254
-
-
Jaenisch, R.1
Bird, A.2
-
67
-
-
79956330964
-
CpG islands and the regulation of transcription
-
Deaton, A.M.; Bird, A. CpG islands and the regulation of transcription. Genes Dev. 2011, 25, 1010–1022.
-
(2011)
Genes Dev
, vol.25
, pp. 1010-1022
-
-
Deaton, A.M.1
Bird, A.2
-
68
-
-
80052495940
-
Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA
-
He, Y.F.; Li, B.Z.; Li, Z.; Liu, P.; Wang, Y.; Tang, Q.; Ding, J.; Jia, Y.; Chen, Z.; Li, L., et al.; Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA. Science 2011, 333, 1303–1307.
-
(2011)
Science
, vol.333
, pp. 1303-1307
-
-
He, Y.F.1
Li, B.Z.2
Li, Z.3
Liu, P.4
Wang, Y.5
Tang, Q.6
Ding, J.7
Jia, Y.8
Chen, Z.9
Li, L.10
-
69
-
-
82255192294
-
5-hmC-mediated epigenetic dynamics during postnatal neurodevelopment and aging
-
Szulwach, K.E.; Li, X.; Li, Y.; Song, C.X.; Wu, H.; Dai, Q.; Irier, H.; Upadhyay, A.K.; Gearing, M.; Levey, A.I., et al.; 5-hmC-mediated epigenetic dynamics during postnatal neurodevelopment and aging. Nat. Neurosci. 2011, 14, 1607–1616.
-
(2011)
Nat. Neurosci.
, vol.14
, pp. 1607-1616
-
-
Szulwach, K.E.1
Li, X.2
Li, Y.3
Song, C.X.4
Wu, H.5
Dai, Q.6
Irier, H.7
Upadhyay, A.K.8
Gearing, M.9
Levey, A.I.10
-
70
-
-
43749098985
-
DNA methylation landscapes: Provocative insights from epigenomics
-
Suzuki, M.M.; Bird, A. DNA methylation landscapes: Provocative insights from epigenomics. Nat. Rev. Genet. 2008, 9, 465–476.
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 465-476
-
-
Suzuki, M.M.1
Bird, A.2
-
71
-
-
84923194044
-
Non-coding RNA: What is functional and what is junk?
-
Palazzo, A.F.; Lee, E.S. Non-coding RNA: What is functional and what is junk? Front. Genet. 2015, 6, 2.
-
(2015)
Front. Genet.
, vol.6
-
-
Palazzo, A.F.1
Lee, E.S.2
-
72
-
-
84886252113
-
RNA in unexpected places: Long non-coding RNA functions in diverse cellular contexts
-
Geisler, S.; Coller, J. RNA in unexpected places: Long non-coding RNA functions in diverse cellular contexts. Nat. Rev. Mol. Cell Biol. 2013, 14, 699–712.
-
(2013)
Nat. Rev. Mol. Cell Biol.
, vol.14
, pp. 699-712
-
-
Geisler, S.1
Coller, J.2
-
73
-
-
84901315841
-
Post-transcriptional regulation of gene expression in innate immunity
-
Carpenter, S.; Ricci, E.P.; Mercier, B.C.; Moore, M.J.; Fitzgerald, K.A. Post-transcriptional regulation of gene expression in innate immunity. Nat. Rev. Immunol. 2014, 14, 361–376.
-
(2014)
Nat. Rev. Immunol.
, vol.14
, pp. 361-376
-
-
Carpenter, S.1
Ricci, E.P.2
Mercier, B.C.3
Moore, M.J.4
Fitzgerald, K.A.5
-
74
-
-
79955581917
-
MicroRNAs and epigenetics
-
Sato, F.; Tsuchiya, S.; Meltzer, S.J.; Shimizu, K. MicroRNAs and epigenetics. FEBS J. 2011, 278, 1598–1609.
-
(2011)
FEBS J
, vol.278
, pp. 1598-1609
-
-
Sato, F.1
Tsuchiya, S.2
Meltzer, S.J.3
Shimizu, K.4
-
75
-
-
84886925369
-
The open chromatin landscape of Kaposi’s sarcoma-associated herpesvirus
-
Hilton, I.B.; Simon, J.M.; Lieb, J.D.; Davis, I.J.; Damania, B.; Dittmer, D.P. The open chromatin landscape of Kaposi’s sarcoma-associated herpesvirus. J. Virol. 2013, 87, 11831–11842.
-
(2013)
J. Virol
, vol.87
, pp. 11831-11842
-
-
Hilton, I.B.1
Simon, J.M.2
Lieb, J.D.3
Davis, I.J.4
Damania, B.5
Dittmer, D.P.6
-
76
-
-
84988945264
-
Chromatin accessibility: A window into the genome
-
Tsompana, M.; Buck, M.J. Chromatin accessibility: A window into the genome. Epigenet. Chromatin 2014, 7, 33.
-
(2014)
Epigenet. Chromatin
, vol.7
-
-
Tsompana, M.1
Buck, M.J.2
-
77
-
-
34250369627
-
FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin
-
Giresi, P.G.; Kim, J.; McDaniell, R.M.; Iyer, V.R.; Lieb, J.D. FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin. Genome Res. 2007, 17, 877–885.
-
(2007)
Genome Res.
, vol.17
, pp. 877-885
-
-
Giresi, P.G.1
Kim, J.2
McDaniell, R.M.3
Iyer, V.R.4
Lieb, J.D.5
-
78
-
-
67649524640
-
Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements)
-
Giresi, P.G.; Lieb, J.D. Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements). Methods 2009, 48, 233–239.
-
(2009)
Methods
, vol.48
, pp. 233-239
-
-
Giresi, P.G.1
Lieb, J.D.2
-
79
-
-
34547633677
-
Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing
-
Robertson, G.; Hirst, M.; Bainbridge, M.; Bilenky, M.; Zhao, Y.; Zeng, T.; Euskirchen, G.; Bernier, B.; Varhol, R.; Delaney, A., et al.; Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing. Nat. Methods 2007, 4, 651–657.
-
(2007)
Nat. Methods
, vol.4
, pp. 651-657
-
-
Robertson, G.1
Hirst, M.2
Bainbridge, M.3
Bilenky, M.4
Zhao, Y.5
Zeng, T.6
Euskirchen, G.7
Bernier, B.8
Varhol, R.9
Delaney, A.10
-
80
-
-
70349312354
-
ChIP-seq: Advantages and challenges of a maturing technology
-
Park, P.J. ChIP-seq: Advantages and challenges of a maturing technology. Nat. Rev. Genet. 2009, 10, 669–680.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 669-680
-
-
Park, P.J.1
-
81
-
-
84865777819
-
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
-
Landt, S.G.; Marinov, G.K.; Kundaje, A.; Kheradpour, P.; Pauli, F.; Batzoglou, S.; Bernstein, B.E.; Bickel, P.; Brown, J.B.; Cayting, P., et al.; ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. Genome Res. 2012, 22, 1813–1831.
-
(2012)
Genome Res
, vol.22
, pp. 1813-1831
-
-
Landt, S.G.1
Marinov, G.K.2
Kundaje, A.3
Kheradpour, P.4
Pauli, F.5
Batzoglou, S.6
Bernstein, B.E.7
Bickel, P.8
Brown, J.B.9
Cayting, P.10
-
82
-
-
39449088572
-
Genome-wide approaches to studying chromatin modifications
-
Schones, D.E.; Zhao, K. Genome-wide approaches to studying chromatin modifications. Nat. Rev. Genet. 2008, 9, 179–191.
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 179-191
-
-
Schones, D.E.1
Zhao, K.2
-
83
-
-
23044514626
-
Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
-
Weber, M.; Davies, J.J.; Wittig, D.; Oakeley, E.J.; Haase, M.; Lam, W.L.; Schubeler, D. Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells. Nat. Genet. 2005, 37, 853–862.
-
(2005)
Nat. Genet.
, vol.37
, pp. 853-862
-
-
Weber, M.1
Davies, J.J.2
Wittig, D.3
Oakeley, E.J.4
Haase, M.5
Lam, W.L.6
Schubeler, D.7
-
84
-
-
78651251739
-
Comparison of methyl-DNA immunoprecipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal CpG sequence coverage bias
-
Nair, S.S.; Coolen, M.W.; Stirzaker, C.; Song, J.Z.; Statham, A.L.; Strbenac, D.; Robinson, M.D.; Clark, S.J. Comparison of methyl-DNA immunoprecipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal CpG sequence coverage bias. Epigenetics 2011, 6, 34–44.
-
(2011)
Epigenetics
, vol.6
, pp. 34-44
-
-
Nair, S.S.1
Coolen, M.W.2
Stirzaker, C.3
Song, J.Z.4
Statham, A.L.5
Strbenac, D.6
Robinson, M.D.7
Clark, S.J.8
-
85
-
-
39149133183
-
Methyl-DNA immunoprecipitation (MeDIP): Hunting down the DNA methylome
-
Jacinto, F.V.; Ballestar, E.; Esteller, M. Methyl-DNA immunoprecipitation (MeDIP): Hunting down the DNA methylome. Biotechniques 2008, 44, 35, 37, 39 passim.
-
(2008)
Biotechniques
-
-
Jacinto, F.V.1
Ballestar, E.2
Esteller, M.3
-
86
-
-
0029843950
-
Methylation-specific PCR: A novel PCR assay for methylation status of CpG islands
-
Herman, J.G.; Graff, J.R.; Myohanen, S.; Nelkin, B.D.; Baylin, S.B. Methylation-specific PCR: A novel PCR assay for methylation status of CpG islands. Proc. Natl. Acad. Sci. USA 1996, 93, 9821–9826.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 9821-9826
-
-
Herman, J.G.1
Graff, J.R.2
Myohanen, S.3
Nelkin, B.D.4
Baylin, S.B.5
-
87
-
-
0346157290
-
Innate immunity: An overview
-
Beutler, B. Innate immunity: An overview. Mol. Immunol. 2004, 40, 845–859.
-
(2004)
Mol. Immunol.
, vol.40
, pp. 845-859
-
-
Beutler, B.1
-
88
-
-
0031050034
-
Innate immunity: Impact on the adaptive immune response
-
Medzhitov, R.; Janeway, C.A., Jr. Innate immunity: Impact on the adaptive immune response. Curr. Opin. Immunol. 1997, 9, 4–9.
-
(1997)
Curr. Opin. Immunol
, vol.9
, pp. 4-9
-
-
Medzhitov, R.1
Janeway, C.A.2
-
90
-
-
84895904323
-
Pan-viral specificity of IFN-induced genes reveals new roles for cGAS in innate immunity
-
Schoggins, J.W.; MacDuff, D.A.; Imanaka, N.; Gainey, M.D.; Shrestha, B.; Eitson, J.L.; Mar, K.B.; Richardson, R.B.; Ratushny, A.V.; Litvak, V., et al.; Pan-viral specificity of IFN-induced genes reveals new roles for cGAS in innate immunity. Nature 2014, 505, 691–695.
-
(2014)
Nature
, vol.505
, pp. 691-695
-
-
Schoggins, J.W.1
Macduff, D.A.2
Imanaka, N.3
Gainey, M.D.4
Shrestha, B.5
Eitson, J.L.6
Mar, K.B.7
Richardson, R.B.8
Ratushny, A.V.9
Litvak, V.10
-
91
-
-
85012025561
-
The cGAS-STING defense pathway and its counteraction by viruses
-
Ma, Z.; Damania, B. The cGAS-STING defense pathway and its counteraction by viruses. Cell Host Microbe 2016, 19, 150–158.
-
(2016)
Cell Host Microbe
, vol.19
, pp. 150-158
-
-
Ma, Z.1
Damania, B.2
-
92
-
-
32944464648
-
Pathogen recognition and innate immunity
-
Akira, S.; Uematsu, S.; Takeuchi, O. Pathogen recognition and innate immunity. Cell 2006, 124, 783–801.
-
(2006)
Cell
, vol.124
, pp. 783-801
-
-
Akira, S.1
Uematsu, S.2
Takeuchi, O.3
-
93
-
-
0035524488
-
Toll-like receptors and innate immunity
-
Medzhitov, R. Toll-like receptors and innate immunity. Nat. Rev. Immunol. 2001, 1, 135–145.
-
(2001)
Nat. Rev. Immunol.
, vol.1
, pp. 135-145
-
-
Medzhitov, R.1
-
94
-
-
0035229733
-
CpG DNA: Security code for host defense
-
Medzhitov, R. CpG DNA: Security code for host defense. Nat. Immunol. 2001, 2, 15–16.
-
(2001)
Nat. Immunol.
, vol.2
, pp. 15-16
-
-
Medzhitov, R.1
-
95
-
-
77956992830
-
Epigenetic reprogramming of host genes in viral and microbial pathogenesis
-
Paschos, K.; Allday, M.J. Epigenetic reprogramming of host genes in viral and microbial pathogenesis. Trends Microbiol. 2010, 18, 439–447.
-
(2010)
Trends Microbiol.
, vol.18
, pp. 439-447
-
-
Paschos, K.1
Allday, M.J.2
-
96
-
-
77949971595
-
Selective transcription in response to an inflammatory stimulus
-
Smale, S.T. Selective transcription in response to an inflammatory stimulus. Cell 2010, 140, 833–844.
-
(2010)
Cell
, vol.140
, pp. 833-844
-
-
Smale, S.T.1
-
97
-
-
84896919030
-
Chromatin contributions to the regulation of innate immunity
-
Smale, S.T.; Tarakhovsky, A.; Natoli, G. Chromatin contributions to the regulation of innate immunity. Annu. Rev. Immunol. 2014, 32, 489–511.
-
(2014)
Annu. Rev. Immunol.
, vol.32
, pp. 489-511
-
-
Smale, S.T.1
Tarakhovsky, A.2
Natoli, G.3
-
98
-
-
84925039208
-
Beyond receptors and signaling: Epigenetic factors in the regulation of innate immunity
-
Mehta, S.; Jeffrey, K.L. Beyond receptors and signaling: Epigenetic factors in the regulation of innate immunity. Immunol. Cell Biol. 2015, 93, 233–244.
-
(2015)
Immunol. Cell Biol.
, vol.93
, pp. 233-244
-
-
Mehta, S.1
Jeffrey, K.L.2
-
99
-
-
84885956378
-
Epigenomic control of the innate immune response
-
Stender, J.D.; Glass, C.K. Epigenomic control of the innate immune response. Curr. Opin. Pharmacol. 2013, 13, 582–587.
-
(2013)
Curr. Opin. Pharmacol
, vol.13
, pp. 582-587
-
-
Stender, J.D.1
Glass, C.K.2
-
100
-
-
0033681250
-
Ordered recruitment of chromatin modifying and general transcription factors to the IFN-beta promoter
-
Agalioti, T.; Lomvardas, S.; Parekh, B.; Yie, J.; Maniatis, T.; Thanos, D. Ordered recruitment of chromatin modifying and general transcription factors to the IFN-beta promoter. Cell 2000, 103, 667–678.
-
(2000)
Cell
, vol.103
, pp. 667-678
-
-
Agalioti, T.1
Lomvardas, S.2
Parekh, B.3
Yie, J.4
Maniatis, T.5
Thanos, D.6
-
101
-
-
84861722003
-
Histone H3 lysine 9 di-methylation as an epigenetic signature of the interferon response
-
Fang, T.C.; Schaefer, U.; Mecklenbrauker, I.; Stienen, A.; Dewell, S.; Chen, M.S.; Rioja, I.; Parravicini, V.; Prinjha, R.K.; Chandwani, R., et al.; Histone H3 lysine 9 di-methylation as an epigenetic signature of the interferon response. J. Exp. Med. 2012, 209, 661–669.
-
(2012)
J. Exp. Med.
, vol.209
, pp. 661-669
-
-
Fang, T.C.1
Schaefer, U.2
Mecklenbrauker, I.3
Stienen, A.4
Dewell, S.5
Chen, M.S.6
Rioja, I.7
Parravicini, V.8
Prinjha, R.K.9
Chandwani, R.10
-
102
-
-
84960976329
-
A comprehensive collection of systems biology data characterizing the host response to viral infection
-
Aevermann, B.D.; Pickett, B.E.; Kumar, S.; Klem, E.B.; Agnihothram, S.; Askovich, P.S.; Bankhead, A., 3rd; Bolles, M.; Carter, V.; Chang, J., et al.; A comprehensive collection of systems biology data characterizing the host response to viral infection. Sci. Data 2014, 1, 140033.
-
(2014)
Sci. Data
, vol.1
-
-
Aevermann, B.D.1
Pickett, B.E.2
Kumar, S.3
Klem, E.B.4
Agnihothram, S.5
Askovich, P.S.6
Bankhead, A.7
Bolles, M.8
Carter, V.9
Chang, J.10
-
103
-
-
79957533104
-
Non-coding RNAs as regulators of gene expression and epigenetics
-
Kaikkonen, M.U.; Lam, M.T.; Glass, C.K. Non-coding RNAs as regulators of gene expression and epigenetics. Cardiovasc. Res. 2011, 90, 430–440.
-
(2011)
Cardiovasc. Res.
, vol.90
, pp. 430-440
-
-
Kaikkonen, M.U.1
Lam, M.T.2
Glass, C.K.3
-
104
-
-
84893075305
-
Regulation of type I interferon responses
-
Ivashkiv, L.B.; Donlin, L.T. Regulation of type I interferon responses. Nat. Rev. Immunol. 2014, 14, 36–49.
-
(2014)
Nat. Rev. Immunol.
, vol.14
, pp. 36-49
-
-
Ivashkiv, L.B.1
Donlin, L.T.2
-
105
-
-
84896987305
-
Interferon-stimulated genes: A complex web of host defenses
-
Schneider, W.M.; Chevillotte, M.D.; Rice, C.M. Interferon-stimulated genes: A complex web of host defenses. Annu. Rev. Immunol. 2014, 32, 513–545.
-
(2014)
Annu. Rev. Immunol.
, vol.32
, pp. 513-545
-
-
Schneider, W.M.1
Chevillotte, M.D.2
Rice, C.M.3
-
106
-
-
33646555810
-
Type 1 interferons and the virus-host relationship: A lesson in detente
-
Garcia-Sastre, A.; Biron, C.A. Type 1 interferons and the virus-host relationship: A lesson in detente. Science 2006, 312, 879–882.
-
(2006)
Science
, vol.312
, pp. 879-882
-
-
Garcia-Sastre, A.1
Biron, C.A.2
-
107
-
-
33846536395
-
Recruitment of chromatin-modifying enzymes by CTIP2 promotes HIV-1 transcriptional silencing
-
Marban, C.; Suzanne, S.; Dequiedt, F.; de Walque, S.; Redel, L.; Van Lint, C.; Aunis, D.; Rohr, O., et al.; Recruitment of chromatin-modifying enzymes by CTIP2 promotes HIV-1 transcriptional silencing. EMBO J. 2007, 26, 412–423.
-
(2007)
EMBO J
, vol.26
, pp. 412-423
-
-
Marban, C.1
Suzanne, S.2
Dequiedt, F.3
De Walque, S.4
Redel, L.5
Van Lint, C.6
Aunis, D.7
Rohr, O.8
-
108
-
-
2442653990
-
Proteomics of herpes simplex virus replication compartments: Association of cellular DNA replication, repair, recombination, and chromatin remodeling proteins with ICP8
-
Taylor, T.J.; Knipe, D.M. Proteomics of herpes simplex virus replication compartments: Association of cellular DNA replication, repair, recombination, and chromatin remodeling proteins with ICP8. J. Virol. 2004, 78, 5856–5866.
-
(2004)
J. Virol.
, vol.78
, pp. 5856-5866
-
-
Taylor, T.J.1
Knipe, D.M.2
-
109
-
-
84870769926
-
Epigenetics of host-pathogen interactions: The road ahead and the road behind
-
Gomez-Diaz, E.; Jorda, M.; Peinado, M.A.; Rivero, A. Epigenetics of host-pathogen interactions: The road ahead and the road behind. PLoS Pathog. 2012, 8, e1003007.
-
(2012)
Plos Pathog.
, vol.8
-
-
Gomez-Diaz, E.1
Jorda, M.2
Peinado, M.A.3
Rivero, A.4
-
110
-
-
54449099369
-
The multifunctional NS1 protein of influenza A viruses
-
Hale, B.G.; Randall, R.E.; Ortin, J.; Jackson, D. The multifunctional NS1 protein of influenza A viruses. J. Gen. Virol. 2008, 89 Pt 10, 2359–2376.
-
(2008)
J. Gen. Virol.
, vol.89
, Issue.10
, pp. 2359-2376
-
-
Hale, B.G.1
Randall, R.E.2
Ortin, J.3
Jackson, D.4
-
111
-
-
84886298565
-
Middle East respiratory syndrome coronavirus accessory protein 4a is a type I interferon antagonist
-
Niemeyer, D.; Zillinger, T.; Muth, D.; Zielecki, F.; Horvath, G.; Suliman, T.; Barchet, W.; Weber, F.; Drosten, C.; Muller, M.A. Middle East respiratory syndrome coronavirus accessory protein 4a is a type I interferon antagonist. J. Virol. 2013, 87, 12489–12495.
-
(2013)
J. Virol.
, vol.87
, pp. 12489-12495
-
-
Niemeyer, D.1
Zillinger, T.2
Muth, D.3
Zielecki, F.4
Horvath, G.5
Suliman, T.6
Barchet, W.7
Weber, F.8
Drosten, C.9
Muller, M.A.10
-
112
-
-
79951717126
-
Cultured human airway epithelial cells (Calu-3): A model of human respiratory function, structure, and inflammatory responses
-
Zhu, Y.; Chidekel, A.; Shaffer, T.H. Cultured human airway epithelial cells (Calu-3): A model of human respiratory function, structure, and inflammatory responses. Crit. Care Res. Pract. 2010, 2010, 394578.
-
(2010)
Crit. Care Res. Pract.
, vol.2010
-
-
Zhu, Y.1
Chidekel, A.2
Shaffer, T.H.3
-
113
-
-
29744455608
-
Severe acute respiratory syndrome coronavirus infection of human ciliated airway epithelia: Role of ciliated cells in viral spread in the conducting airways of the lungs
-
ims, A.C.; Baric, R.S.; Yount, B.; Burkett, S.E.; Collins, P.L.; Pickles, R.J. Severe acute respiratory syndrome coronavirus infection of human ciliated airway epithelia: Role of ciliated cells in viral spread in the conducting airways of the lungs. J. Virol. 2005, 79, 15511–15524.
-
(2005)
J. Virol.
, vol.79
, pp. 15511-15524
-
-
Ims, A.C.1
Baric, R.S.2
Yount, B.3
Burkett, S.E.4
Collins, P.L.5
Pickles, R.J.6
-
114
-
-
84938083996
-
Interference of viral effector proteins with chromatin, transcription, and the epigenome
-
Marazzi, I.; Garcia-Sastre, A. Interference of viral effector proteins with chromatin, transcription, and the epigenome. Curr. Opin. Microbiol. 2015, 26, 123–129.
-
(2015)
Curr. Opin. Microbiol.
, vol.26
, pp. 123-129
-
-
Marazzi, I.1
Garcia-Sastre, A.2
-
115
-
-
84897850450
-
Pathogens hijack the epigenome: A new twist on host-pathogen interactions
-
Silmon de Monerri, N.C.; Kim, K. Pathogens hijack the epigenome: A new twist on host-pathogen interactions. Am. J. Pathol. 2014, 184, 897–911.
-
(2014)
Am. J. Pathol.
, vol.184
, pp. 897-911
-
-
Silmon De Monerri, N.C.1
Kim, K.2
-
117
-
-
85031679857
-
Understanding gene regulatory mechanisms by integrating ChIP-seq and RNA-seq data: Statistical solutions to biological problems
-
Angelini, C.; Costa, V. Understanding gene regulatory mechanisms by integrating ChIP-seq and RNA-seq data: Statistical solutions to biological problems. Front. Cell Dev. Biol. 2014, 2, 51.
-
(2014)
Front. Cell Dev. Biol.
, vol.2
-
-
Angelini, C.1
Costa, V.2
-
118
-
-
84925031191
-
Methods of integrating data to uncover genotype-phenotype interactions
-
Ritchie, M.D.; Holzinger, E.R.; Li, R.; Pendergrass, S.A.; Kim, D. Methods of integrating data to uncover genotype-phenotype interactions. Nat. Rev. Genet. 2015, 16, 85–97.
-
(2015)
Nat. Rev. Genet.
, vol.16
, pp. 85-97
-
-
Ritchie, M.D.1
Holzinger, E.R.2
Li, R.3
Pendergrass, S.A.4
Kim, D.5
-
119
-
-
0029919356
-
Transcriptional activation and chromatin remodeling of the HIV-1 promoter in response to histone acetylation
-
Van Lint, C.; Emiliani, S.; Ott, M.; Verdin, E. Transcriptional activation and chromatin remodeling of the HIV-1 promoter in response to histone acetylation. EMBO J. 1996, 15, 1112–1120.
-
(1996)
EMBO J.
, vol.15
, pp. 1112-1120
-
-
Van Lint, C.1
Emiliani, S.2
Ott, M.3
Verdin, E.4
-
120
-
-
70449122130
-
Inhibition of the histone demethylase LSD1 blocks alpha-herpesvirus lytic replication and reactivation from latency
-
Liang, Y.; Vogel, J.L.; Narayanan, A.; Peng, H.; Kristie, T.M. Inhibition of the histone demethylase LSD1 blocks alpha-herpesvirus lytic replication and reactivation from latency. Nat. Med. 2009, 15, 1312–137.
-
(2009)
Nat. Med.
, vol.15
, pp. 1312-2137
-
-
Liang, Y.1
Vogel, J.L.2
Narayanan, A.3
Peng, H.4
Kristie, T.M.5
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