A user's guide to the Encyclopedia of DNA elements (ENCODE)

PLoS Biology

Volumn 9, Issue 4, 2011, Pages

  Myers, Richard M ^a   Stamatoyannopoulos, John ^b   Snyder, Michael ^c   Dunham, Ian ^d   Hardison, Ross C ^e   Bernstein, Bradley E ^f,g   Gingeras, Thomas R ^h   Kent, W James ⁱ   Birney, Ewan ^d   Wold, Barbara ^j,k   Crawford, Gregory E ^l,m   Epstein, Charles B ^f   Shoresh, Noam ^f   Ernst, Jason ^f,n   Mikkelsen, Tarjei S ^f   Kheradpour, Pouya ^f,n   Zhang, Xiaolan ^f   Wang, Li ^f   Issner, Robbyn ^f   Coyne, Michael J ^f   Durham, Timothy ^f   Ku, Manching ^f   Truong, Thanh ^f   Ward, Lucas D ^f,n   Altshuler, Robert C ⁿ   Lin, Michael F ^f,n   Kellis, Manolis ^f,n   Davis, Carrie A ^h   Kapranov, Philipp ^o   Dobin, Alexander ^h   Zaleski, Christopher ^h   Schlesinger, Felix ^h   Batut, Philippe ^h   Chakrabortty, Sudipto ^h   Jha, Sonali ^h   Lin, Wei ^h   Drenkow, Jorg ^h   Wang, Huaien ^h   Bell, Kim ^h   Bell, Ian ^o   Gao, Hui ^p   Dumais, Erica ^o   Dumais, Jacqueline ^o   Antonarakis, Stylianos E ^q   Ucla, Catherine ^q   Borel, Christelle ^q   Guigo, Roderic ^r   Djebali, Sarah ^r   Lagarde, Julien ^r   Kingswood, Colin ^r   Ribeca, Paolo ^r   Sammeth, Micha ^r   Alioto, Tyler ^r   Merkel, Angelika ^r   Tilgner, Hagen ^r   Carninci, Piero ^s   Hayashizaki, Yoshihide ^s   Lassmann, Timo ^s   Takahashi, Hazuki ^s   Abdelhamid, Rehab F ^s   Hannon, Gregory ^t   Fejes, Katalin Toth ^h   Preall, Jonathan ^h   Gordon, Assaf ^h   Sotirova, Vihra ^h   Reymond, Alexandre ^u   Howald, Cedric ^u   Graison, Emilie Aït Yahya ^u   Chrast, Jacqueline ^u   Ruan, Yijun ^v   Ruan, Xiaoan ^v   Shahab, Atif ^v   Poh, Wan Ting ^v   Wei, Chia Lin ^v   Furey, Terrence S ^l   Boyle, Alan P ^l   Sheffield, Nathan C ^l   Song, Lingyun ^l   Shibata, Yoichiro ^l   Vales, Teresa ^l   Winter, Deborah ^l   Zhang, Zhancheng ^l   London, Darin ^l   Wang, Tianyuan ^l   Keefe, Damian ^d   Iyer, Vishwanath R ^w   Lee, Bum Kyu ^w   McDaniell, Ryan M ^w   Liu, Zheng ^w   Battenhouse, Anna ^w   Bhinge, Akshay A ^w   Lieb, Jason D ^x   Grasfeder, Linda L ^x   Showers, Kimberly A ^x   Giresi, Paul G ^x   Kim, Seul K C ^x   Shestak, Christopher ^x   Pauli, Florencia ^a   Reddy, Timothy E ^a   Gertz, Jason ^a   Partridge, E Christopher ^a   Jain, Preti ^a   Sprouse, Rebekka O ^a   Bansal, Anita ^a   Pusey, Barbara ^a   Muratet, Michael A ^a   Varley, Katherine E ^a   Bowling, Kevin M ^a   Newberry, Kimberly M ^a   Nesmith, Amy S ^a   Dilocker, Jason A ^a   Parker, Stephanie L ^a   Waite, Lindsay L ^a   Thibeault, Krista ^a   Roberts, Kevin ^a   Absher, Devin M ^a   Mortazavi, Ali ^j,k   Williams, Brian ^j   Marinov, Georgi ^j   Trout, Diane ^j   King, Brandon ^j   McCue, Kenneth ^j   Kirilusha, Anthony ^j   DeSalvo, Gilberto ^j   Fisher, Katherine Aylor ^j   Amrhein, Henry ^j   Pepke, Shirley ^j   Vielmetter, Jost ^k   Sherlock, Gavin ^c   Sidow, Arend ^c   Batzoglou, Serafim ^y   Rauch, Rami ^c   Kundaje, Anshul ^c,y   Libbrecht, Max ^y   Margulies, Elliott H ^z   Parker, Stephen C J ^z,ao   Elnitski, Laura ^z   Green, Eric D ^z   Hubbard, Tim ^aa   Harrow, Jennifer ^aa   Searle, Stephen ^aa   Aken, Browen ^aa   Frankish, Adam ^aa   Hunt, Toby ^aa   Despacio Reyes, Gloria ^aa   Kay, Mike ^aa   Mukherjee, Gaurab ^aa   Bignell, Alexandra ^aa   Saunders, Gary ^aa   Boychenko, Veronika ^aa   Brent, Michael ^ab   van Baren, M J ^ab   Brown, Randall H ^ab   Gerstein, Mark ^ab,ac,ad   Khurana, Ekta ^ac   Balasubramanian, Suganthi ^ac   Lam, Hugo ^ac   Cayting, Philip ^c,ac   Robilotto, Rebecca ^ac   Lu, Zhi ^ac   Derrien, Thomas ^r   Tanzer, Andrea ^r   Knowles, David G ^r   Mariotti, Marco ^r   Haussler, David ^i,ae   Harte, Rachel ⁱ   Diekhans, Mark ⁱ   Lin, Mike ^f,n   Valencia, Alfonso ^af   Tress, Michael ^af   Rodriguez, Jose Manuel ^af   Raha, Debasish ^ac   Shi, Minyi ^c   Euskirchen, Ghia ^c   Grubert, Fabian ^c   Kasowski, Maya ^ac   Lian, Jin ^ag   Lacroute, Phil ^c   Xu, Youhan ^ac   Monahan, Hannah ^ac   Patacsil, Dorrelyn ^c   Slifer, Teri ^c   Yang, Xinqiong ^c   Charos, Alexandra ^ac   Reed, Brian ^ac   Wu, Linfeng ^c   Auerbach, Raymond K ^ac   Habegger, Lukas ^ac   Hariharan, Manoj ^c   Rozowsky, Joel ^ac   Abyzov, Alexej ^ac   Weissman, Sherman M ^ag   Struhl, Kevin ^ah   Lamarre Vincent, Nathan ^ah   Lindahl Allen, Marianne ^ah   Miotto, Benoit ^ah   Moqtaderi, Zarmik ^ah   Fleming, Joseph D ^ah   Newburger, Peter ^ai   Farnham, Peggy J ^aj,ak   Frietze, Seth ^aj,ak   O'Geen, Henriette ^ak   Xu, Xiaoqin ^ak   Blahnik, Kim R ^ak   Cao, Alina R ^ak   Iyengar, Sushma ^ak   Kaul, Rajinder ^b   Thurman, Robert E ^b   Wang, Hao ^b   Navas, Patrick A ^b   Sandstrom, Richard ^b   Sabo, Peter J ^b   Weaver, Molly ^b   Canfield, Theresa ^b   Lee, Kristen ^b   Neph, Shane ^b   Roach, Vaughan ^b   Reynolds, Alex ^b   Johnson, Audra ^b   Rynes, Eric ^b   Giste, Erika ^b   Vong, Shinny ^b   Neri, Jun ^b   Frum, Tristan ^b   Nguyen, Eric D ^b   Ebersol, Abigail K ^b   Sanchez, Minerva E ^b   Sheffer, Hadar H ^b   Lotakis, Dimitra ^b   Haugen, Eric ^b   Humbert, Richard ^b   Kutyavin, Tanya ^b   Shafer, Tony ^b   Noble, William S ^b,an   Dekker, Job ^ai   Lajoie, Bryan R ^ai   Sanyal, Amartya ^ai   Rosenbloom, Kate R ⁱ   Dreszer, Timothy R ⁱ   Raney, Brian J ⁱ   Barber, Galt P ⁱ   Meyer, Laurence R ⁱ   Sloan, Cricket A ⁱ   Malladi, Venkat S ⁱ   Cline, Melissa S ⁱ   Learned, Katrina ⁱ   Swing, Vanessa K ⁱ   Zweig, Ann S ⁱ   Rhead, Brooke ⁱ   Fujita, Pauline A ⁱ   Roskin, Krishna ⁱ   Karolchik, Donna ⁱ   Kuhn, Robert M ⁱ   Wilder, Steven P ^d   Sobral, Daniel ^d   Herrero, Javier ^d   Beal, Kathryn ^d   Lukk, Margus ^d   Brazma, Alvis ^d   Vaquerizas, Juan M ^d   Luscombe, Nicholas M ^d   Bickel, Peter J ^al   Boley, Nathan ^al   Brown, James B ^al   Li, Qunhua ^al   Huang, Haiyan ^al   Sboner, Andrea ^ac   Yip, Kevin Y ^ac   Cheng, Chao ^ac   Yan, Koon Kiu ^ac   Bhardwaj, Nitin ^ac   Wang, Jing ^ac   Lochovsky, Lucas ^ac   Jee, Justin ^ac   Gibson, Theodore ^ac   Leng, Jing ^ac   Du, Jiang ^ad   Harris, Robert S ^e   Song, Giltae ^e   Miller, Webb ^e   Suh, Bernard ⁱ   Paten, Benedict ⁱ   Hoffman, Michael M ^b   Buske, Orion J ^b   Weng, Zhiping ^ai   Dong, Xianjun ^ai   Wang, Jie ^ai   Xi, Hualin ^ao   Tenenbaum, Scott A ^ap   Doyle, Frank ^ap   Chittur, Sridar ^ap   Penalva, Luiz O ^aq   Tullius, Thomas D ^ao   White, Kevin P ^ar   Karmakar, Subhradip ^ar   Victorsen, Alec ^ar   Jameel, Nader ^ar   Bild, Nick ^ar   Grossman, Robert L ^ar   Collins, Patrick J ^as   Trinklein, Nathan D ^as   Giddings, Morgan C ^x,at,au   Khatun, Jainab ^at   Maier, Chris ^at   Wang, Ting ^am   Whitfield, Troy W ^ai   Chen, Xian ^z   Yu, Yanbao ^x   Gunawardena, Harsha ^x   Feingold, Elise A ^z   Lowdon, Rebecca F ^z   Dillon, Laura A L ^z   Good, Peter J ^z   Risk, Brian ^au   more..

^a HUDSONALPHA INSTITUTE FOR BIOTECHNOLOGY   (United States)

^b UNIVERSITY OF WASHINGTON   (United States)

^c STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^d EUROPEAN BIOINFORMATICS INSTITUTE   (United Kingdom)

^e PENNSYLVANIA STATE UNIVERSITY   (United States)

^f BROAD INSTITUTE OF MIT AND HARVARD   (United States)

^g MASSACHUSETTS GENERAL HOSPITAL   (United States)

^h Howard Hughes Medical Institute Cold Spring Harbor Laboratory Cold Spring Harbor   (United States)

ⁱ University of California Santa Cruz   (United States)

^j CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

^k CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

^l DUKE UNIVERSITY   (United States)

^m DUKE UNIVERSITY SCHOOL OF MEDICINE   (United States)

ⁿ MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^o Thermo Fisher Scientific   (United States)

^p KAROLINSKA INSTITUTE   (Sweden)

^q UNIVERSITY OF GENEVA   (Switzerland)

^r CENTRE FOR GENOMIC REGULATION CRG   (Spain)

^s RIKEN YOKOHAMA INSTITUTE   (Japan)

^t HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^u UNIVERSITY OF LAUSANNE   (Switzerland)

^v GENOME INSTITUTE OF SINGAPORE   (Singapore)

^w UNIVERSITY OF TEXAS AT AUSTIN   (United States)

^x UNIVERSITY OF NORTH CAROLINA   (United States)

^y Stanford University   (United States)

^z NATIONAL HUMAN GENOME RESEARCH INSTITUTE   (United States)

^aa WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^ab WASHINGTON UNIVERSITY   (United States)

^ac YALE UNIVERSITY   (United States)

^ad Yale University   (United States)

^ae UNIVERSITY OF CALIFORNIA   (United States)

^af Centro Nacional de Investigaciones Oncológicas   (Spain)

^ag YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^ah HARVARD MEDICAL SCHOOL   (United States)

^ai UNIVERSITY OF MASSACHUSETTS MEDICAL SCHOOL   (United States)

^aj UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

^ak UNIVERSITY OF CALIFORNIA   (United States)

^al UNIVERSITY OF CALIFORNIA   (United States)

^am WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^an University of Washington   (United States)

^ao BOSTON UNIVERSITY   (United States)

^ap STATE UNIVERSITY OF NEW YORK   (United States)

^aq Children's Cancer Research Institute   (United States)

^ar UNIVERSITY OF CHICAGO   (United States)

^as SwitchGear Genomics   (United States)

^at BOISE STATE UNIVERSITY   (United States)

^au UNIVERSITY OF NORTH CAROLINA SCHOOL OF MEDICINE   (United States)

more..

Author keywords

[No Author keywords available]

Indexed keywords

RNA POLYMERASE; TRANSCRIPTION FACTOR;

ARTICLE; BINDING SITE; CHROMATIN IMMUNOPRECIPITATION; DNA METHYLATION; ENCYCLOPEDIA OF DNA ELEMENTS; GENE EXPRESSION REGULATION; GENETIC ASSOCIATION; GENETIC CONSERVATION; GENETIC DATABASE; HISTONE MODIFICATION; HUMAN; HUMAN GENOME; MEDICAL RESEARCH; MICROARRAY ANALYSIS; NUCLEOTIDE SEQUENCE; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN LOCALIZATION; PROTEIN RNA BINDING; PROTEOMICS; RNA PROCESSING; SEQUENCE ANALYSIS; STRUCTURE ANALYSIS; TRANSCRIPTION INITIATION SITE; TRANSCRIPTION REGULATION; TRANSCRIPTION TERMINATION;

EID: 79955550445     PISSN: 15449173     EISSN: 15457885     Source Type: Journal    
DOI: 10.1371/journal.pbio.1001046     Document Type: Article

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