-
1
-
-
0000213492
-
Reversible methylation and inactivation of marker genes in sequentially transformed tobacco plants
-
Matzke,M.A., Primig,M., Trnovsky,J. and Matzke,A.J.M. (1989) Reversible methylation and inactivation of marker genes in sequentially transformed tobacco plants. EMBO J., 8, 643-649.
-
(1989)
EMBO J.
, vol.8
, pp. 643-649
-
-
Matzke, M.A.1
Primig, M.2
Trnovsky, J.3
Matzke, A.J.M.4
-
2
-
-
0034596989
-
Transcriptional silencing and promoter methylation triggered by double-stranded RNA
-
Mette,M.F., Aufsatz,W., Van der Winden,J., Matzke,A.J.M. and Matzke,M.A. (2000) Transcriptional silencing and promoter methylation triggered by double-stranded RNA. EMBO J., 19, 5194-5201.
-
(2000)
EMBO J.
, vol.19
, pp. 5194-5201
-
-
Mette, M.F.1
Aufsatz, W.2
Van Der Winden, J.3
Matzke, A.J.M.4
Matzke, M.A.5
-
3
-
-
0028031830
-
RNA-directed de novo methylation of genomic sequences in plants
-
Wassenegger,M., Heimes,S., Riedel,L. and Sänger,H.L. (1994) RNA-directed de novo methylation of genomic sequences in plants. Cell, 76, 567-576.
-
(1994)
Cell
, vol.76
, pp. 567-576
-
-
Wassenegger, M.1
Heimes, S.2
Riedel, L.3
Sänger, H.L.4
-
4
-
-
4243085624
-
Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification
-
Lippman,Z., May,B., Yordan,C., Singer,T. and Martienssen,R. (2003) Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification. PLoS Biol., 1, E67.
-
(2003)
PLoS Biol.
, vol.1
, pp. E67
-
-
Lippman, Z.1
May, B.2
Yordan, C.3
Singer, T.4
Martienssen, R.5
-
5
-
-
0032506226
-
Virus resistance and gene silencing in plants can be induced by simultaneous expression of sense and antisense RNA
-
Waterhouse,P.M., Graham,M.W. and Wang,M.B. (1998) Virus resistance and gene silencing in plants can be induced by simultaneous expression of sense and antisense RNA. Proc. Natl. Acad. Sci. U.S.A., 95, 13959-13964.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A
, vol.95
, pp. 13959-13964
-
-
Waterhouse, P.M.1
Graham, M.W.2
Wang, M.B.3
-
6
-
-
0032545933
-
Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
-
Fire,A., Xu,S., Montgomery,M.K., Kostas,S.A., Driver,S.E. and Mello,C.C. (1998) Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature, 391, 806-811.
-
(1998)
Nature
, vol.391
, pp. 806-811
-
-
Fire, A.1
Xu, S.2
Montgomery, M.K.3
Kostas, S.A.4
Driver, S.E.5
Mello, C.C.6
-
7
-
-
80051862684
-
Small RNA-induced transcriptional gene regulation in mammals mechanisms, therapeutic applications, and scope within the genome
-
Green,V.A. and Weinberg,M.S. (2011) Small RNA-induced transcriptional gene regulation in mammals mechanisms, therapeutic applications, and scope within the genome. Prog. Mol. Biol. Transl. Sci., 102, 11-46.
-
(2011)
Prog. Mol. Biol. Transl. Sci.
, vol.102
, pp. 11-46
-
-
Green, V.A.1
Weinberg, M.S.2
-
8
-
-
76749108015
-
RNA-directed transcriptional gene silencing and activation in human cells
-
Morris,K.V. (2009) RNA-directed transcriptional gene silencing and activation in human cells. Oligonucleotides, 19, 299-306.
-
(2009)
Oligonucleotides
, vol.19
, pp. 299-306
-
-
Morris, K.V.1
-
9
-
-
4344705410
-
Small interfering RNA-induced transcriptional gene silencing in human cells
-
Morris,K.V., Chan,S.W., Jacobsen,S.E. and Looney,D.J. (2004) Small interfering RNA-induced transcriptional gene silencing in human cells. Science, 305, 1289-1292.
-
(2004)
Science
, vol.305
, pp. 1289-1292
-
-
Morris, K.V.1
Chan, S.W.2
Jacobsen, S.E.3
Looney, D.J.4
-
10
-
-
23044507007
-
Short double-stranded RNA induces transcriptional gene silencing in human cancer cells in the absence of DNA methylation
-
Ting,A.H., Schuebel,K.E., Herman,J.G. and Baylin,S.B. (2005) Short double-stranded RNA induces transcriptional gene silencing in human cancer cells in the absence of DNA methylation. Nat. Genet., 37, 906-910.
-
(2005)
Nat. Genet.
, vol.37
, pp. 906-910
-
-
Ting, A.H.1
Schuebel, K.E.2
Herman, J.G.3
Baylin, S.B.4
-
11
-
-
33644832338
-
Inhibiting gene expression at transcription start sites in chromosomal DNA with antigene RNAs
-
Janowski,B.A., Huffman,K.E., Schwartz,J.C., Ram,R., Hardy,D., Shames,D.S.,Minna,J.D. and Corey,D.R. (2005) Inhibiting gene expression at transcription start sites in chromosomal DNA with antigene RNAs. Nat. Chem. Biol., 1, 210-215.
-
(2005)
Nat. Chem. Biol.
, vol.1
, pp. 210-215
-
-
Janowski, B.A.1
Huffman, K.E.2
Schwartz, J.C.3
Ram, R.4
Hardy, D.5
Shames, D.S.6
Minna, J.D.7
Corey, D.R.8
-
12
-
-
40649125588
-
RNA-mediated transcriptional gene silencing in human cells
-
Morris,K.V. (2008) RNA-mediated transcriptional gene silencing in human cells. Curr. Top. Microbiol. Immunol., 320, 211-224.
-
(2008)
Curr. Top. Microbiol. Immunol.
, vol.320
, pp. 211-224
-
-
Morris, K.V.1
-
13
-
-
29344463071
-
SiRNA-mediated transcriptional gene silencing: The potential mechanism and a possible role in the histone code
-
Morris,K.V. (2005) siRNA-mediated transcriptional gene silencing: the potential mechanism and a possible role in the histone code. Cell Mol. Life Sci., 62, 3057-3066.
-
(2005)
Cell Mol. Life Sci.
, vol.62
, pp. 3057-3066
-
-
Morris, K.V.1
-
14
-
-
66249108936
-
Promoter targeted small RNAs induce long-term transcriptional gene silencing in human cells
-
Hawkins,P.G., Santoso,S., Adams,C., Anest,V. and Morris,K.V. (2009) Promoter targeted small RNAs induce long-term transcriptional gene silencing in human cells. Nucleic Acids Res., 2984-2995.
-
(2009)
Nucleic Acids Res.
, pp. 2984-2995
-
-
Hawkins, P.G.1
Santoso, S.2
Adams, C.3
Anest, V.4
Morris, K.V.5
-
15
-
-
20844435197
-
Short hairpin RNA-directed cytosine (CpG) methylation of the RASSF1A gene promoter in HeLa cells
-
Castanotto,D., Tommasi,S., Li,M., Li,H., Yanow,S., Pfeifer,G.P. and Rossi,J.J. (2005) Short hairpin RNA-directed cytosine (CpG) methylation of the RASSF1A gene promoter in HeLa cells. Mol. Ther., 12, 179-183.
-
(2005)
Mol. Ther.
, vol.12
, pp. 179-183
-
-
Castanotto, D.1
Tommasi, S.2
Li, M.3
Li, H.4
Yanow, S.5
Pfeifer, G.P.6
Rossi, J.J.7
-
16
-
-
34547626629
-
Promoter-associated RNA is required for RNA-directed transcriptional gene silencing in human cells
-
Han,J., Kim,D. and Morris,K.V. (2007) Promoter-associated RNA is required for RNA-directed transcriptional gene silencing in human cells. Proc. Natl. Acad. Sci. U.S.A., 104, 12422-12427.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A
, vol.104
, pp. 12422-12427
-
-
Han, J.1
Kim, D.2
Morris, K.V.3
-
17
-
-
33748368912
-
Argonaute-1 directs siRNA-mediated transcriptional gene silencing in human cells
-
Kim,D.H., Villeneuve,L.M.,Morris,K.V. and Rossi,J.J. (2006) Argonaute-1 directs siRNA-mediated transcriptional gene silencing in human cells. Nat. Struct. Mol. Biol., 13, 793-797.
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 793-797
-
-
Kim, D.H.1
Villeneuve, L.M.2
Morris, K.V.3
Rossi, J.J.4
-
18
-
-
31044433795
-
The antisense strand of small interfering RNAs directs histone methylation and transcriptional gene silencing in human cells
-
Weinberg,M.S., Villeneuve,L.M., Ehsani,A., Amarzguioui,M., Aagaard,L., Chen,Z.X., Riggs,A.D., Rossi,J.J. and Morris,K.V. (2006) The antisense strand of small interfering RNAs directs histone methylation and transcriptional gene silencing in human cells. RNA, 12, 256-262.
-
(2006)
RNA
, vol.12
, pp. 256-262
-
-
Weinberg, M.S.1
Villeneuve, L.M.2
Ehsani, A.3
Amarzguioui, M.4
Aagaard, L.5
Chen, Z.X.6
Riggs, A.D.7
Rossi, J.J.8
Morris, K.V.9
-
19
-
-
81255176941
-
Transcriptional gene silencing of HIV-1 through promoter targeted RNA is highly specific
-
Suzuki,K., Ishida,T., Yamagishi,M., Ahlenstiel,C., Swaminathan,S., Marks,K., Murray,D.,McCartney,E.M., Beard,M.R., Alexander,M. et al. (2011) Transcriptional gene silencing of HIV-1 through promoter targeted RNA is highly specific. RNA Biol., 8, 1035-1046.
-
(2011)
RNA Biol.
, vol.8
, pp. 1035-1046
-
-
Suzuki, K.1
Ishida, T.2
Yamagishi, M.3
Ahlenstiel, C.4
Swaminathan, S.5
Marks, K.6
Murray, D.7
McCartney, E.M.8
Beard, M.R.9
Alexander, M.10
-
20
-
-
53149132028
-
Closed chromatin architecture is induced by an RNA duplex targeting the HIV-1 promoter region
-
Suzuki,K., Juelich,T., Lim,H., Ishida,T., Watanebe,T., Cooper,D.A., Rao,S. and Kelleher,A.D. (2008) Closed chromatin architecture is induced by an RNA duplex targeting the HIV-1 promoter region. J. Biol. Chem., 283, 23353-23363.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 23353-23363
-
-
Suzuki, K.1
Juelich, T.2
Lim, H.3
Ishida, T.4
Watanebe, T.5
Cooper, D.A.6
Rao, S.7
Kelleher, A.D.8
-
21
-
-
64549113392
-
Retroviral delivery of promoter-targeted shRNA induces long-term silencing of HIV-1 transcription
-
Yamagishi,M., Ishida,T., Miyake,A., Cooper,D.A., Kelleher,A.D., Suzuki,K. and Watanabe,T. (2009) Retroviral delivery of promoter-targeted shRNA induces long-term silencing of HIV-1 transcription. Microbes Infect., 11, 500-508.
-
(2009)
Microbes Infect
, vol.11
, pp. 500-508
-
-
Yamagishi, M.1
Ishida, T.2
Miyake, A.3
Cooper, D.A.4
Kelleher, A.D.5
Suzuki, K.6
Watanabe, T.7
-
22
-
-
67649537602
-
Promoter-specific transcriptional interference and c-myc gene silencing by siRNAs in human cells
-
Napoli,S., Pastori,C., Magistri,M., Carbone,G.M. and Catapano,C.V. (2009) Promoter-specific transcriptional interference and c-myc gene silencing by siRNAs in human cells. EMBO J., 28, 1708-1719.
-
(2009)
EMBO J.
, vol.28
, pp. 1708-1719
-
-
Napoli, S.1
Pastori, C.2
Magistri, M.3
Carbone, G.M.4
Catapano, C.V.5
-
23
-
-
57849140661
-
Divergent transcription from active promoters
-
Seila,A.C., Calabrese,J.M., Levine,S.S., Yeo,G.W., Rahl,P.B., Flynn,R.A., Young,R.A. and Sharp,P.A. (2008) Divergent transcription from active promoters. Science, 322, 1849-1851.
-
(2008)
Science
, vol.322
, pp. 1849-1851
-
-
Seila, A.C.1
Calabrese, J.M.2
Levine, S.S.3
Yeo, G.W.4
Rahl, P.B.5
Flynn, R.A.6
Young, R.A.7
Sharp, P.A.8
-
24
-
-
57849109058
-
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
-
Core,L.J., Waterfall,J.J. and Lis,J.T. (2008) Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science, 322, 1845-1848.
-
(2008)
Science
, vol.322
, pp. 1845-1848
-
-
Core, L.J.1
Waterfall, J.J.2
Lis, J.T.3
-
25
-
-
33748339362
-
Involvement of AGO1 and AGO2 in mammalian transcriptional silencing
-
Janowski,B.A., Huffman,K.E., Schwartz,J.C., Ram,R., Nordsell,R., Shames,D.S., Minna,J.D. and Corey,D.R. (2006) Involvement of AGO1 and AGO2 in mammalian transcriptional silencing. Nat. Struct. Mol. Biol., 13, 787-792.
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 787-792
-
-
Janowski, B.A.1
Huffman, K.E.2
Schwartz, J.C.3
Ram, R.4
Nordsell, R.5
Shames, D.S.6
Minna, J.D.7
Corey, D.R.8
-
26
-
-
84863229335
-
Direct evidence of nuclear Argonaute distribution during transcriptional silencing links the actin cytoskeleton to nuclear RNAi machinery in human cells
-
Ahlenstiel,C.L., Lim,H.G., Cooper,D.A., Ishida,T., Kelleher,A.D. and Suzuki,K. (2012) Direct evidence of nuclear Argonaute distribution during transcriptional silencing links the actin cytoskeleton to nuclear RNAi machinery in human cells. Nucleic Acids Res., 40, 1579-1595.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 1579-1595
-
-
Ahlenstiel, C.L.1
Lim, H.G.2
Cooper, D.A.3
Ishida, T.4
Kelleher, A.D.5
Suzuki, K.6
-
27
-
-
55849135596
-
MicroRNA-directed transcriptional gene silencing in mammalian cells
-
Kim,D.H., Saetrom,P., Snove,O.Jr and Rossi,J.J. (2008) MicroRNA-directed transcriptional gene silencing in mammalian cells. Proc. Natl. Acad. Sci. U.S.A., 105, 16230-16235.
-
(2008)
Proc. Natl. Acad. Sci. U.S.A
, vol.105
, pp. 16230-16235
-
-
Kim, D.H.1
Saetrom, P.2
Snove, O.3
Rossi, J.J.4
-
28
-
-
14744297918
-
Regulation of human immunodeficiency virus 1 transcription by nef microRNA
-
Omoto,S. and Fujii,Y.R. (2005) Regulation of human immunodeficiency virus 1 transcription by nef microRNA. J. Gen. Virol., 86, 751-755.
-
(2005)
J. Gen. Virol.
, vol.86
, pp. 751-755
-
-
Omoto, S.1
Fujii, Y.R.2
-
29
-
-
34548304523
-
HIV-1 TAR element is processed by Dicer to yield a viral micro-RNA involved in chromatin remodeling of the viral LTR
-
Klase,Z., Kale,P., Winograd,R., Gupta,M.V., Heydarian,M., Berro,R., McCaffrey,T. and Kashanchi,F. (2007) HIV-1 TAR element is processed by Dicer to yield a viral micro-RNA involved in chromatin remodeling of the viral LTR. BMC Mol. Biol., 8, 63.
-
(2007)
BMC Mol. Biol.
, vol.8
, pp. 63
-
-
Klase, Z.1
Kale, P.2
Winograd, R.3
Gupta, M.V.4
Heydarian, M.5
Berro, R.6
McCaffrey, T.7
Kashanchi, F.8
-
30
-
-
65549158866
-
Transcriptional inhibition of Hoxd4 expression by noncoding RNAs in human breast cancer cells
-
Tan,Y., Zhang,B., Wu,T., Skogerbo,G., Zhu,X., Guo,X., He,S. and Chen,R. (2009) Transcriptional inhibition of Hoxd4 expression by noncoding RNAs in human breast cancer cells. BMC Mol. Biol., 10, 12.
-
(2009)
BMC Mol. Biol.
, vol.10
, pp. 12
-
-
Tan, Y.1
Zhang, B.2
Wu, T.3
Skogerbo, G.4
Zhu, X.5
Guo, X.6
He, S.7
Chen, R.8
-
31
-
-
24644519490
-
The transcriptional landscape of the mammalian genome
-
Carninci,P., Kasukawa,T., Katayama,S., Gough,J., Frith,M.C., Maeda,N., Oyama,R., Ravasi,T., Lenhard,B.,Wells,C. et al. (2005) The transcriptional landscape of the mammalian genome. Science, 309, 1559-1563.
-
(2005)
Science
, vol.309
, pp. 1559-1563
-
-
Carninci, P.1
Kasukawa, T.2
Katayama, S.3
Gough, J.4
Frith, M.C.5
Maeda, N.6
Oyama, R.7
Ravasi, T.8
Lenhard, B.9
Wells, C.10
-
32
-
-
24644472515
-
Antisense transcription in the mammalian transcriptome
-
Katayama,S., Tomaru,Y., Kasukawa,T.,Waki,K., Nakanishi,M., Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J. et al. (2005) Antisense transcription in the mammalian transcriptome. Science, 309, 1564-1566.
-
(2005)
Science
, vol.309
, pp. 1564-1566
-
-
Katayama, S.1
Tomaru, Y.2
Kasukawa, T.3
Waki, K.4
Nakanishi, M.5
Nakamura, M.6
Nishida, H.7
Yap, C.C.8
Suzuki, M.9
Kawai, J.10
-
33
-
-
15544380198
-
Naturally occurring antisense: Transcriptional leakage or real overlap
-
Dahary,D., Elroy-Stein,O. and Sorek,R. (2005) Naturally occurring antisense: transcriptional leakage or real overlap? Genome Res., 15, 364-368.
-
(2005)
Genome Res
, vol.15
, pp. 364-368
-
-
Dahary, D.1
Elroy-Stein, O.2
Sorek, R.3
-
34
-
-
0442307970
-
Search of antisense
-
Lavorgna,G., Dahary,D., Lehner,B., Sorek,R., Sanderson,C.M. and Casari,G. (2004) In search of antisense. Trends Biochem. Sci., 29, 88-94.
-
(2004)
Trends Biochem. Sci.
, vol.29
, pp. 88-94
-
-
Lavorgna, G.1
Dahary, D.2
Lehner, B.3
Sorek, R.4
Sanderson, C.M.5
Casari, G.6
-
35
-
-
66349129918
-
Regulation of imprinted expression by macro non-coding RNAs
-
Latos,P.A. and Barlow,D.P. (2009) Regulation of imprinted expression by macro non-coding RNAs. RNA Biol., 6, 100-106.
-
(2009)
RNA Biol.
, vol.6
, pp. 100-106
-
-
Latos, P.A.1
Barlow, D.P.2
-
36
-
-
77950841042
-
Transcriptional gene silencing through epigenetic changes mediated by non-coding RNAs
-
Malecova,B. and Morris,K.V. (2010) Transcriptional gene silencing through epigenetic changes mediated by non-coding RNAs. Curr. Opin. Mol. Ther., 12, 214-222.
-
(2010)
Curr. Opin. Mol. Ther.
, vol.12
, pp. 214-222
-
-
Malecova, B.1
Morris, K.V.2
-
37
-
-
79959359296
-
Long antisense non-coding RNAs function to direct epigenetic complexes that regulate transcription in human cells
-
Morris,K.V. (2009) Long antisense non-coding RNAs function to direct epigenetic complexes that regulate transcription in human cells. Epigenetics, 4, 296-301.
-
(2009)
Epigenetics
, vol.4
, pp. 296-301
-
-
Morris, K.V.1
-
38
-
-
38049155825
-
Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA
-
Yu,W., Gius,D., Onyango,P., Muldoon-Jacobs,K., Karp,J., Feinberg,A.P. and Cui,H. (2008) Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA. Nature, 451, 202-206.
-
(2008)
Nature
, vol.451
, pp. 202-206
-
-
Yu, W.1
Gius, D.2
Onyango, P.3
Muldoon-Jacobs, K.4
Karp, J.5
Feinberg, A.P.6
Cui, H.7
-
39
-
-
57149110631
-
Bidirectional transcription directs both transcriptional gene activation and suppression in human cells
-
Morris,K.V., Santoso,S., Turner,A.M., Pastori,C. and Hawkins,P.G. (2008) Bidirectional transcription directs both transcriptional gene activation and suppression in human cells. PLoS Genet., 4, e1000258.
-
(2008)
PLoS Genet
, vol.4
, pp. e1000258
-
-
Morris, K.V.1
Santoso, S.2
Turner, A.M.3
Pastori, C.4
Hawkins, P.G.5
-
40
-
-
0038581890
-
Transcription of antisense RNA leading to gene silencing and methylation as a novel cause of human genetic disease
-
Tufarelli,C., Stanley,J.A., Garrick,D., Sharpe,J.A., Ayyub,H., Wood,W.G. and Higgs,D.R. (2003) Transcription of antisense RNA leading to gene silencing and methylation as a novel cause of human genetic disease. Nat. Genet., 34, 157-165.
-
(2003)
Nat. Genet
, vol.34
, pp. 157-165
-
-
Tufarelli, C.1
Stanley, J.A.2
Garrick, D.3
Sharpe, J.A.4
Ayyub, H.5
Wood, W.G.6
Higgs, D.R.7
-
41
-
-
84869016176
-
Activity-dependent human brain coding/noncoding gene regulatory networks
-
Lipovich,L., Dachet,F., Cai,J., Bagla,S., Balan,K., Jia,H. and Loeb,J.A. (2012) Activity-dependent human brain coding/noncoding gene regulatory networks. Genetics, 192, 1133-1148.
-
(2012)
Genetics
, vol.192
, pp. 1133-1148
-
-
Lipovich, L.1
Dachet, F.2
Cai, J.3
Bagla, S.4
Balan, K.5
Jia, H.6
Loeb, J.A.7
-
42
-
-
84860353437
-
Inhibition of natural antisense transcripts in vivo results in gene-specific transcriptional upregulation
-
Modarresi,F., Faghihi,M.A., Lopez-Toledano,M.A., Fatemi,R.P., Magistri,M., Brothers,S.P., van der Brug,M.P. and Wahlestedt,C. (2012) Inhibition of natural antisense transcripts in vivo results in gene-specific transcriptional upregulation. Nat. Biotechnol., 30, 453-459.
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 453-459
-
-
Modarresi, F.1
Faghihi, M.A.2
Lopez-Toledano, M.A.3
Fatemi, R.P.4
Magistri, M.5
Brothers, S.P.6
Van Der Brug, M.P.7
Wahlestedt, C.8
-
43
-
-
84944457168
-
MYCNOS functions as an antisense RNA regulating MYCN
-
Vadie,N., Saayman,S., Lenox,A., Ackley,A., Clemson,M., Burdach,J., Hart,J., Vogt,P.K. and Morris,K.V. (2015) MYCNOS functions as an antisense RNA regulating MYCN. RNA Biol., 12, 893-899.
-
(2015)
RNA Biol.
, vol.12
, pp. 893-899
-
-
Vadie, N.1
Saayman, S.2
Lenox, A.3
Ackley, A.4
Clemson, M.5
Burdach, J.6
Hart, J.7
Vogt, P.K.8
Morris, K.V.9
-
44
-
-
84865553575
-
AS1DHRS4, a head-to-head natural antisense transcript, silences the DHRS4 gene cluster in cis and trans
-
Li,Q., Su,Z., Xu,X., Liu,G., Song,X., Wang,R., Sui,X., Liu,T., Chang,X. and Huang,D. (2012) AS1DHRS4, a head-to-head natural antisense transcript, silences the DHRS4 gene cluster in cis and trans. Proc. Natl. Acad. Sci. U.S.A., 109, 14110-14115.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A
, vol.109
, pp. 14110-14115
-
-
Li, Q.1
Su, Z.2
Xu, X.3
Liu, G.4
Song, X.5
Wang, R.6
Sui, X.7
Liu, T.8
Chang, X.9
Huang, D.10
-
45
-
-
79957552432
-
Kcnq1ot1: A chromatin regulatory RNA
-
Kanduri,C. (2011) Kcnq1ot1: a chromatin regulatory RNA. Semin. Cell Dev. Biol., 22, 343-350.
-
(2011)
Semin. Cell Dev. Biol.
, vol.22
, pp. 343-350
-
-
Kanduri, C.1
-
46
-
-
44349115087
-
Kcnq1ot1/Lit1 noncoding RNA mediates transcriptional silencing by targeting to the perinucleolar region
-
Mohammad,F., Pandey,R.R., Nagano,T., Chakalova,L., Mondal,T., Fraser,P. and Kanduri,C. (2008) Kcnq1ot1/Lit1 noncoding RNA mediates transcriptional silencing by targeting to the perinucleolar region. Mol. Cell Biol., 28, 3713-3728.
-
(2008)
Mol. Cell Biol.
, vol.28
, pp. 3713-3728
-
-
Mohammad, F.1
Pandey, R.R.2
Nagano, T.3
Chakalova, L.4
Mondal, T.5
Fraser, P.6
Kanduri, C.7
-
47
-
-
54049138948
-
Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation
-
Pandey,R.R., Mondal,T., Mohammad,F., Enroth,S., Redrup,L., Komorowski,J., Nagano,T.,Mancini-Dinardo,D. and Kanduri,C. (2008) Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation. Mol. Cell, 32, 232-246.
-
(2008)
Mol. Cell
, vol.32
, pp. 232-246
-
-
Pandey, R.R.1
Mondal, T.2
Mohammad, F.3
Enroth, S.4
Redrup, L.5
Komorowski, J.6
Nagano, T.7
Mancini-Dinardo, D.8
Kanduri, C.9
-
48
-
-
84912070710
-
The risk-associated long noncoding RNA NBAT-1 controls neuroblastoma progression by regulating cell proliferation and neuronal differentiation
-
Pandey,G.K., Mitra,S., Subhash,S., Hertwig,F., Kanduri,M., Mishra,K., Fransson,S., Ganeshram,A., Mondal,T., Bandaru,S. et al. (2014) The risk-associated long noncoding RNA NBAT-1 controls neuroblastoma progression by regulating cell proliferation and neuronal differentiation. Cancer Cell, 26, 722-737.
-
(2014)
Cancer Cell
, vol.26
, pp. 722-737
-
-
Pandey, G.K.1
Mitra, S.2
Subhash, S.3
Hertwig, F.4
Kanduri, M.5
Mishra, K.6
Fransson, S.7
Ganeshram, A.8
Mondal, T.9
Bandaru, S.10
-
49
-
-
36849011656
-
Detection, characterization and regulation of antisense transcripts in HIV-1
-
Landry,S., Halin,M., Lefort,S., Audet,B., Vaquero,C., Mesnard,J.M. and Barbeau,B. (2007) Detection, characterization and regulation of antisense transcripts in HIV-1. Retrovirology, 4, 71.
-
(2007)
Retrovirology
, vol.4
, pp. 71
-
-
Landry, S.1
Halin, M.2
Lefort, S.3
Audet, B.4
Vaquero, C.5
Mesnard, J.M.6
Barbeau, B.7
-
50
-
-
33751324105
-
Human immunodeficiency virus-Type 1 LTR DNA contains an intrinsic gene producing antisense RNA and protein products
-
Ludwig,L.B., Ambrus,J.L. Jr, Krawczyk,K.A., Sharma,S., Brooks,S., Hsiao,C.B. and Schwartz,S.A. (2006) Human immunodeficiency virus-Type 1 LTR DNA contains an intrinsic gene producing antisense RNA and protein products. Retrovirology, 3, 80.
-
(2006)
Retrovirology
, vol.3
, pp. 80
-
-
Ludwig, L.B.1
Ambrus, K.A.2
Krawczyk, L.J.3
Sharma, S.4
Brooks, S.5
Hsiao, C.B.6
Schwartz, S.A.7
-
51
-
-
0023898366
-
Human immunodeficiency virus may encode a novel protein on the genomic DNA plus strand
-
Miller,R.H. (1988) Human immunodeficiency virus may encode a novel protein on the genomic DNA plus strand. Science, 239, 1420-1422.
-
(1988)
Science
, vol.239
, pp. 1420-1422
-
-
Miller, R.H.1
-
52
-
-
84902183146
-
An HIV-encoded antisense long noncoding RNA epigenetically regulates viral transcription
-
Saayman,S., Ackley,A., Turner,A.M., Famiglietti,M., Bosque,A., Clemson,M., Planelles,V. and Morris,K.V. (2014) An HIV-encoded antisense long noncoding RNA epigenetically regulates viral transcription. Mol. Ther., 22, 1164-1175.
-
(2014)
Mol. Ther.
, vol.22
, pp. 1164-1175
-
-
Saayman, S.1
Ackley, A.2
Turner, A.M.3
Famiglietti, M.4
Bosque, A.5
Clemson, M.6
Planelles, V.7
Morris, K.V.8
-
53
-
-
84876177255
-
A pseudogene long-noncoding-RNA network regulates PTEN transcription and translation in human cells
-
Johnsson,P., Ackley,A., Vidarsdottir,L., Lui,W.O., Corcoran,M., Grander,D. and Morris,K.V. (2013) A pseudogene long-noncoding-RNA network regulates PTEN transcription and translation in human cells. Nat. Struct. Mol. Biol., 20, 440-446.
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 440-446
-
-
Johnsson, P.1
Ackley, A.2
Vidarsdottir, L.3
Lui, W.O.4
Corcoran, M.5
Grander, D.6
Morris, K.V.7
-
54
-
-
79952255050
-
Transcriptional regulation of Oct4 by a long non-coding RNA antisense to Oct4-pseudogene 5
-
Hawkins,P.G. and Morris,K.V. (2010) Transcriptional regulation of Oct4 by a long non-coding RNA antisense to Oct4-pseudogene 5. Transcription, 1, 165-175.
-
(2010)
Transcription
, vol.1
, pp. 165-175
-
-
Hawkins, P.G.1
Morris, K.V.2
-
55
-
-
84869129894
-
Long noncoding RNA-mediated maintenance of DNA methylation and transcriptional gene silencing
-
Mohammad,F., Pandey,G.K., Mondal,T., Enroth,S., Redrup,L., Gyllensten,U. and Kanduri,C. (2012) Long noncoding RNA-mediated maintenance of DNA methylation and transcriptional gene silencing. Development, 139, 2792-2803.
-
(2012)
Development
, vol.139
, pp. 2792-2803
-
-
Mohammad, F.1
Pandey, G.K.2
Mondal, T.3
Enroth, S.4
Redrup, L.5
Gyllensten, U.6
Kanduri, C.7
-
56
-
-
80052394416
-
Noncoding transcripts in sense and antisense orientation regulate the epigenetic state of ribosomal RNA genes
-
Bierhoff,H., Schmitz,K., Maass,F., Ye,J. and Grummt,I. (2010) Noncoding transcripts in sense and antisense orientation regulate the epigenetic state of ribosomal RNA genes. Cold Spring Harb. Symp. Quant. Biol., 75, 357-364.
-
(2010)
Cold Spring Harb. Symp. Quant. Biol.
, vol.75
, pp. 357-364
-
-
Bierhoff, H.1
Schmitz, K.2
Maass, F.3
Ye, J.4
Grummt, I.5
-
57
-
-
77955323879
-
A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response
-
Huarte,M., Guttman,M., Feldser,D., Garber,M., Koziol,M.J., Kenzelmann-Broz,D., Khalil,A.M., Zuk,O., Amit,I., Rabani,M. et al. (2010) A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response. Cell, 142, 409-419.
-
(2010)
Cell
, vol.142
, pp. 409-419
-
-
Huarte, M.1
Guttman, M.2
Feldser, D.3
Garber, M.4
Koziol, M.J.5
Kenzelmann-Broz, D.6
Khalil, A.M.7
Zuk, O.8
Amit, I.9
Rabani, M.10
-
58
-
-
84938200351
-
A long non-coding RNA, LncMyoD, regulates skeletal muscle differentiation by blocking IMP2-mediated mRNA translation
-
Gong,C., Li,Z., Ramanujan,K., Clay,I., Zhang,Y., Lemire-Brachat,S. and Glass,D.J. (2015) A long non-coding RNA, LncMyoD, regulates skeletal muscle differentiation by blocking IMP2-mediated mRNA translation. Dev. Cell, 34, 181-191.
-
(2015)
Dev. Cell
, vol.34
, pp. 181-191
-
-
Gong, C.1
Li, Z.2
Ramanujan, K.3
Clay, I.4
Zhang, Y.5
Lemire-Brachat, S.6
Glass, D.J.7
-
59
-
-
84899486799
-
The STAT3-binding long noncoding RNA lnc-DC controls human dendritic cell differentiation
-
Wang,P., Xue,Y., Han,Y., Lin,L., Wu,C., Xu,S., Jiang,Z., Xu,J., Liu,Q. and Cao,X. (2014) The STAT3-binding long noncoding RNA lnc-DC controls human dendritic cell differentiation. Science, 344, 310-313.
-
(2014)
Science
, vol.344
, pp. 310-313
-
-
Wang, P.1
Xue, Y.2
Han, Y.3
Lin, L.4
Wu, C.5
Xu, S.6
Jiang, Z.7
Xu, J.8
Liu, Q.9
Cao, X.10
-
60
-
-
42649100978
-
SmcHD1, containing a structural-maintenance-of-chromosomes hinge domain, has a critical role in X inactivation
-
Blewitt,M.E., Gendrel,A.V., Pang,Z., Sparrow,D.B.,Whitelaw,N., Craig,J.M., Apedaile,A., Hilton,D.J., Dunwoodie,S.L., Brockdorff,N. et al. (2008) SmcHD1, containing a structural-maintenance-of-chromosomes hinge domain, has a critical role in X inactivation. Nat. Genet., 40, 663-669.
-
(2008)
Nat. Genet
, vol.40
, pp. 663-669
-
-
Blewitt, M.E.1
Gendrel, A.V.2
Pang, Z.3
Sparrow, D.B.4
Whitelaw, N.5
Craig, J.M.6
Apedaile, A.7
Hilton, D.J.8
Dunwoodie, S.L.9
Brockdorff, N.10
-
61
-
-
77954572735
-
Long noncoding RNA as modular scaffold of histone modification complexes
-
Tsai,M.C., Manor,O., Wan,Y., Mosammaparast,N.,Wang,J.K., Lan,F., Shi,Y., Segal,E. and Chang,H.Y. (2010) Long noncoding RNA as modular scaffold of histone modification complexes. Science, 329, 689-693.
-
(2010)
Science
, vol.329
, pp. 689-693
-
-
Tsai, M.C.1
Manor, O.2
Wan, Y.3
Mosammaparast, N.4
Wang, J.K.5
Lan, F.6
Shi, Y.7
Segal, E.8
Chang, H.Y.9
-
62
-
-
84881503516
-
Pseudogene OCT4-pg4 functions as a natural micro RNA sponge to regulate OCT4 expression by competing for miR-145 in hepatocellular carcinoma
-
Wang,L., Guo,Z.Y., Zhang,R., Xin,B., Chen,R., Zhao,J., Wang,T., Wen,W.H., Jia,L.T., Yao,L.B. et al. (2013) Pseudogene OCT4-pg4 functions as a natural micro RNA sponge to regulate OCT4 expression by competing for miR-145 in hepatocellular carcinoma. Carcinogenesis, 34, 1773-1781.
-
(2013)
Carcinogenesis
, vol.34
, pp. 1773-1781
-
-
Wang, L.1
Guo, Z.Y.2
Zhang, R.3
Xin, B.4
Chen, R.5
Zhao, J.6
Wang, T.7
Wen, W.H.8
Jia, L.T.9
Yao, L.B.10
-
63
-
-
84876367541
-
Endogenous miRNA sponge lincRNA-RoR regulates Oct4, Nanog, and Sox2 in human embryonic stem cell self-renewal
-
Wang,Y., Xu,Z., Jiang,J., Xu,C., Kang,J., Xiao,L., Wu,M., Xiong,J., Guo,X. and Liu,H. (2013) Endogenous miRNA sponge lincRNA-RoR regulates Oct4, Nanog, and Sox2 in human embryonic stem cell self-renewal. Dev. Cell, 25, 69-80.
-
(2013)
Dev. Cell
, vol.25
, pp. 69-80
-
-
Wang, Y.1
Xu, Z.2
Jiang, J.3
Xu, C.4
Kang, J.5
Xiao, L.6
Wu, M.7
Xiong, J.8
Guo, X.9
Liu, H.10
-
64
-
-
77953957633
-
A coding-independent function of gene and pseudogene mRNAs regulates tumour biology
-
Poliseno,L., Salmena,L., Zhang,J., Carver,B., Haveman,W.J. and Pandolfi,P.P. (2010) A coding-independent function of gene and pseudogene mRNAs regulates tumour biology. Nature, 465, 1033-1038.
-
(2010)
Nature
, vol.465
, pp. 1033-1038
-
-
Poliseno, L.1
Salmena, L.2
Zhang, J.3
Carver, B.4
Haveman, W.J.5
Pandolfi, P.P.6
-
65
-
-
84893210532
-
Regulation of alternative splicing by local histone modifications: Potential roles for RNA-guided mechanisms
-
Zhou,H.L., Luo,G., Wise,J.A. and Lou,H. (2014) Regulation of alternative splicing by local histone modifications: potential roles for RNA-guided mechanisms. Nucleic Acids Res., 42, 701-713.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 701-713
-
-
Zhou, H.L.1
Luo, G.2
Wise, J.A.3
Lou, H.4
-
66
-
-
84911377275
-
Epithelial-mesenchymal transition and cancer stem cells, mediated by a long non-coding RNA, HOTAIR, are involved in cell malignant transformation induced by cigarette smoke extract
-
Liu,Y., Luo,F., Xu,Y., Wang,B., Zhao,Y., Xu,W., Shi,L., Lu,X. and Liu,Q. (2015) Epithelial-mesenchymal transition and cancer stem cells, mediated by a long non-coding RNA, HOTAIR, are involved in cell malignant transformation induced by cigarette smoke extract. Toxicol. Appl. Pharmacol., 282, 9-19.
-
(2015)
Toxicol. Appl. Pharmacol.
, vol.282
, pp. 9-19
-
-
Liu, Y.1
Luo, F.2
Xu, Y.3
Wang, B.4
Zhao, Y.5
Xu, W.6
Shi, L.7
Lu, X.8
Liu, Q.9
-
67
-
-
84905039941
-
Urothelial carcinoma associated 1 is a hypoxia-inducible factor-1alpha-targeted long noncoding RNA that enhances hypoxic bladder cancer cell proliferation, migration, and invasion
-
Xue,M., Li,X., Li,Z. and Chen,W. (2014) Urothelial carcinoma associated 1 is a hypoxia-inducible factor-1alpha-targeted long noncoding RNA that enhances hypoxic bladder cancer cell proliferation, migration, and invasion. Tumour Biol., 35, 6901-6912.
-
(2014)
Tumour Biol.
, vol.35
, pp. 6901-6912
-
-
Xue, M.1
Li, X.2
Li, Z.3
Chen, W.4
-
68
-
-
84873451950
-
The noncoding RNA MALAT1 is a critical regulator of the metastasis phenotype of lung cancer cells
-
Gutschner,T., Hammerle,M., Eissmann,M., Hsu,J., Kim,Y., Hung,G., Revenko,A., Arun,G., Stentrup,M., Gross,M. et al. (2013) The noncoding RNA MALAT1 is a critical regulator of the metastasis phenotype of lung cancer cells. Cancer Res., 73, 1180-1189.
-
(2013)
Cancer Res.
, vol.73
, pp. 1180-1189
-
-
Gutschner, T.1
Hammerle, M.2
Eissmann, M.3
Hsu, J.4
Kim, Y.5
Hung, G.6
Revenko, A.7
Arun, G.8
Stentrup, M.9
Gross, M.10
-
69
-
-
84926163086
-
The long noncoding RNA Pnky regulates neuronal differentiation of embryonic and postnatal neural stem cells
-
Ramos,A.D., Andersen,R.E., Liu,S.J., Nowakowski,T.J., Hong,S.J., Gertz,C.C., Salinas,R.D., Zarabi,H., Kriegstein,A.R. and Lim,D.A. (2015) The long noncoding RNA Pnky regulates neuronal differentiation of embryonic and postnatal neural stem cells. Cell Stem Cell, 16, 439-447.
-
(2015)
Cell Stem Cell
, vol.16
, pp. 439-447
-
-
Ramos, A.D.1
Andersen, R.E.2
Liu, S.J.3
Nowakowski, T.J.4
Hong, S.J.5
Gertz, C.C.6
Salinas, R.D.7
Zarabi, H.8
Kriegstein, A.R.9
Lim, D.A.10
-
70
-
-
77957243921
-
Long noncoding RNAs with enhancer-like function in human cells
-
Orom,U.A., Derrien,T., Beringer,M., Gumireddy,K., Gardini,A., Bussotti,G., Lai,F., Zytnicki,M., Notredame,C., Huang,Q. et al. (2010) Long noncoding RNAs with enhancer-like function in human cells. Cell, 143, 46-58.
-
(2010)
Cell
, vol.143
, pp. 46-58
-
-
Orom, U.A.1
Derrien, T.2
Beringer, M.3
Gumireddy, K.4
Gardini, A.5
Bussotti, G.6
Lai, F.7
Zytnicki, M.8
Notredame, C.9
Huang, Q.10
-
71
-
-
77952367798
-
Widespread transcription at neuronal activity-regulated enhancers
-
Kim,T.K., Hemberg,M., Gray,J.M., Costa,A.M., Bear,D.M., Wu,J., Harmin,D.A., Laptewicz,M., Barbara-Haley,K., Kuersten,S. et al. (2010) Widespread transcription at neuronal activity-regulated enhancers. Nature, 465, 182-187.
-
(2010)
Nature
, vol.465
, pp. 182-187
-
-
Kim, T.K.1
Hemberg, M.2
Gray, J.M.3
Costa, A.M.4
Bear, D.M.5
Wu, J.6
Harmin, D.A.7
Laptewicz, M.8
Barbara-Haley, K.9
Kuersten, S.10
-
72
-
-
84922391291
-
Enhancer RNA facilitates NELF release from immediate early genes
-
Schaukowitch,K., Joo,J.Y., Liu,X., Watts,J.K., Martinez,C. and Kim,T.K. (2014) Enhancer RNA facilitates NELF release from immediate early genes. Mol. Cell, 56, 29-42.
-
(2014)
Mol. Cell
, vol.56
, pp. 29-42
-
-
Schaukowitch, K.1
Joo, J.Y.2
Liu, X.3
Watts, J.K.4
Martinez, C.5
Kim, T.K.6
-
73
-
-
84888790012
-
Enhancer transcribed RNAs arise from hypomethylated, Tet-occupied genomic regions
-
Pulakanti,K., Pinello,L., Stelloh,C., Blinka,S., Allred,J., Milanovich,S., Kiblawi,S., Peterson,J., Wang,A., Yuan,G.C. et al. (2013) Enhancer transcribed RNAs arise from hypomethylated, Tet-occupied genomic regions. Epigenetics, 8, 1303-1320.
-
(2013)
Epigenetics
, vol.8
, pp. 1303-1320
-
-
Pulakanti, K.1
Pinello, L.2
Stelloh, C.3
Blinka, S.4
Allred, J.5
Milanovich, S.6
Kiblawi, S.7
Peterson, J.8
Wang, A.9
Yuan, G.C.10
-
74
-
-
84884618929
-
The intronic long noncoding RNA ANRASSF1 recruits PRC2 to the RASSF1A promoter, reducing the expression of RASSF1A and increasing cell proliferation
-
Beckedorff,F.C., Ayupe,A.C., Crocci-Souza,R., Amaral,M.S., Nakaya,H.I., Soltys,D.T.,Menck,C.F., Reis,E.M. and Verjovski-Almeida,S. (2013) The intronic long noncoding RNA ANRASSF1 recruits PRC2 to the RASSF1A promoter, reducing the expression of RASSF1A and increasing cell proliferation. PLoS Genet., 9, e1003705.
-
(2013)
PLoS Genet
, vol.9
, pp. e1003705
-
-
Beckedorff, F.C.1
Ayupe, A.C.2
Crocci-Souza, R.3
Amaral, M.S.4
Nakaya, H.I.5
Soltys, D.T.6
Menck, C.F.7
Reis, E.M.8
Verjovski-Almeida, S.9
-
75
-
-
79955468280
-
Long non-coding RNA ANRIL is required for the PRC2 recruitment to and silencing of p15(INK4B) tumor suppressor gene
-
Kotake,Y., Nakagawa,T., Kitagawa,K., Suzuki,S., Liu,N., Kitagawa,M. and Xiong,Y. (2011) Long non-coding RNA ANRIL is required for the PRC2 recruitment to and silencing of p15(INK4B) tumor suppressor gene. Oncogene, 30, 1956-1962.
-
(2011)
Oncogene
, vol.30
, pp. 1956-1962
-
-
Kotake, Y.1
Nakagawa, T.2
Kitagawa, K.3
Suzuki, S.4
Liu, N.5
Kitagawa, M.6
Xiong, Y.7
-
77
-
-
84866889114
-
RNA modulation of the human DNA methyltransferase 3A
-
Holz-Schietinger,C. and Reich,N.O. (2012) RNA modulation of the human DNA methyltransferase 3A. Nucleic Acids Res., 40, 8550-8557.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 8550-8557
-
-
Holz-Schietinger, C.1
Reich, N.O.2
-
78
-
-
78649543210
-
Recombinant mammalian DNA methyltransferase activity on model transcriptional gene silencing short RNA-DNA heteroduplex substrates
-
Ross,J.P., Suetake,I., Tajima,S. and Molloy,P.L. (2010) Recombinant mammalian DNA methyltransferase activity on model transcriptional gene silencing short RNA-DNA heteroduplex substrates. Biochem. J., 432, 323-332.
-
(2010)
Biochem. J.
, vol.432
, pp. 323-332
-
-
Ross, J.P.1
Suetake, I.2
Tajima, S.3
Molloy, P.L.4
-
79
-
-
31044436469
-
Prolonged transcriptional silencing and CpG methylation induced by siRNAs targeted to the HIV-1 promoter region
-
Suzuki,K., Shijuuku,T., Fukamachi,T., Zaunders,J., Guillemin,G., Cooper,D. and Kelleher,A. (2005) Prolonged transcriptional silencing and CpG methylation induced by siRNAs targeted to the HIV-1 promoter region. J. RNAi Gene Silencing, 1, 66-78.
-
(2005)
J. RNAi Gene Silencing
, vol.1
, pp. 66-78
-
-
Suzuki, K.1
Shijuuku, T.2
Fukamachi, T.3
Zaunders, J.4
Guillemin, G.5
Cooper, D.6
Kelleher, A.7
-
80
-
-
84861670544
-
Characterization of an HIV-targeted transcriptional gene-silencing RNA in primary cells
-
Turner,A.M., Ackley,A.M., Matrone,M.A. and Morris,K.V. (2012) Characterization of an HIV-targeted transcriptional gene-silencing RNA in primary cells. Hum. Gene Ther., 23, 473-483.
-
(2012)
Hum. Gene Ther.
, vol.23
, pp. 473-483
-
-
Turner, A.M.1
Ackley, A.M.2
Matrone, M.A.3
Morris, K.V.4
-
81
-
-
84901041535
-
RNA-directed DNA methylation: An epigenetic pathway of increasing complexity
-
Matzke,M.A. and Mosher,R.A. (2014) RNA-directed DNA methylation: an epigenetic pathway of increasing complexity. Nat. Rev. Genet., 15, 394-408.
-
(2014)
Nat. Rev. Genet
, vol.15
, pp. 394-408
-
-
Matzke, M.A.1
Mosher, R.A.2
-
82
-
-
36048951040
-
Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in S
-
Camblong,J., Iglesias,N., Fickentscher,C., Dieppois,G. and Stutz,F. (2007) Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in S. cerevisiae. Cell, 131, 706-717.
-
(2007)
Cerevisiae. Cell
, vol.131
, pp. 706-717
-
-
Camblong, J.1
Iglesias, N.2
Fickentscher, C.3
Dieppois, G.4
Stutz, F.5
-
83
-
-
67649666831
-
Trans-acting antisense RNAs mediate transcriptional gene cosuppression in S.cerevisiae
-
Camblong,J., Beyrouthy,N., Guffanti,E., Schlaepfer,G., Steinmetz,L.M. and Stutz,F. (2009) Trans-acting antisense RNAs mediate transcriptional gene cosuppression in S. cerevisiae. Genes Dev., 23, 1534-1545.
-
(2009)
Genes Dev.
, vol.23
, pp. 1534-1545
-
-
Camblong, J.1
Beyrouthy, N.2
Guffanti, E.3
Schlaepfer, G.4
Steinmetz, L.M.5
Stutz, F.6
-
84
-
-
0026704195
-
Characterization of an endogenous RNA transcript with homology to the antisense strand of the human c-myc gene
-
Celano,P., Berchtold,C.M., Kizer,D.L.,Weeraratna,A., Nelkin,B.D., Baylin,S.B. and Casero,R.A. Jr (1992) Characterization of an endogenous RNA transcript with homology to the antisense strand of the human c-myc gene. J. Biol. Chem., 267, 15092-15096.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 15092-15096
-
-
Celano, P.1
Berchtold, C.M.2
Kizer, D.L.3
Weeraratna, A.4
Nelkin, B.D.5
Baylin, S.B.6
Casero, R.A.7
-
85
-
-
0026526181
-
An antisense promoter of the murine c-myc gene is localized within intron 2
-
Spicer,D.B. and Sonenshein,G.E. (1992) An antisense promoter of the murine c-myc gene is localized within intron 2. Mol. Cell. Biol., 12, 1324-1329.
-
(1992)
Mol. Cell. Biol.
, vol.12
, pp. 1324-1329
-
-
Spicer, D.B.1
Sonenshein, G.E.2
-
86
-
-
77951118936
-
Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
-
Gupta,R.A., Shah,N., Wang,K.C., Kim,J., Horlings,H.M., Wong,D.J., Tsai,M.C., Hung,T., Argani,P., Rinn,J.L. et al. (2010) Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature, 464, 1071-1076.
-
(2010)
Nature
, vol.464
, pp. 1071-1076
-
-
Gupta, R.A.1
Shah, N.2
Wang, K.C.3
Kim, J.4
Horlings, H.M.5
Wong, D.J.6
Tsai, M.C.7
Hung, T.8
Argani, P.9
Rinn, J.L.10
-
87
-
-
67650921949
-
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
-
Khalil,A.M., Guttman,M., Huarte,M., Garber,M., Raj,A., Rivea Morales,D., Thomas,K., Presser,A., Bernstein,B.E., van Oudenaarden,A. et al. (2009) Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc. Natl. Acad. Sci. U.S.A., 106, 11667-11672.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A
, vol.106
, pp. 11667-11672
-
-
Khalil, A.M.1
Guttman, M.2
Huarte, M.3
Garber, M.4
Raj, A.5
Rivea Morales, D.6
Thomas, K.7
Presser, A.8
Bernstein, B.E.9
Van Oudenaarden, A.10
-
88
-
-
84888057006
-
DNMT1-interacting RNAs block gene-specific DNA methylation
-
Di Ruscio,A., Ebralidze,A.K., Benoukraf,T., Amabile,G., Goff,L.A., Terragni,J., Figueroa,M.E., De Figureido Pontes,L.L., Alberich-Jorda,M., Zhang,P. et al. (2013) DNMT1-interacting RNAs block gene-specific DNA methylation. Nature, 503, 371-376.
-
(2013)
Nature
, vol.503
, pp. 371-376
-
-
Di Ruscio, A.1
Ebralidze, A.K.2
Benoukraf, T.3
Amabile, G.4
Goff, L.A.5
Terragni, J.6
Figueroa, M.E.7
De Figureido Pontes, L.L.8
Alberich-Jorda, M.9
Zhang, P.10
-
89
-
-
0033753779
-
The DNA methyltransferases of mammals
-
Bestor,T.H. (2000) The DNA methyltransferases of mammals. Hum. Mol. Genet., 9, 2395-2402.
-
(2000)
Hum. Mol. Genet
, vol.9
, pp. 2395-2402
-
-
Bestor, T.H.1
-
90
-
-
10344250458
-
Components of the DNA methylation system of chromatin control are RNA-binding proteins
-
Jeffery,L. and Nakielny,S. (2004) Components of the DNA methylation system of chromatin control are RNA-binding proteins. J. Biol. Chem., 279, 49479-49487.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 49479-49487
-
-
Jeffery, L.1
Nakielny, S.2
-
91
-
-
84924449774
-
LncRNA Dum interacts with Dnmts to regulate Dppa2 expression during myogenic differentiation and muscle regeneration
-
Wang,L., Zhao,Y., Bao,X., Zhu,X., Kwok,Y.K., Sun,K., Chen,X., Huang,Y., Jauch,R., Esteban,M.A. et al. (2015) LncRNA Dum interacts with Dnmts to regulate Dppa2 expression during myogenic differentiation and muscle regeneration. Cell Res., 25, 335-350.
-
(2015)
Cell Res.
, vol.25
, pp. 335-350
-
-
Wang, L.1
Zhao, Y.2
Bao, X.3
Zhu, X.4
Kwok, Y.K.5
Sun, K.6
Chen, X.7
Huang, Y.8
Jauch, R.9
Esteban, M.A.10
-
92
-
-
0038412822
-
The DNA methyltransferases associate with HP1 and the SUV39H1 histone methyltransferase
-
Fuks,F., Hurd,P.J., Deplus,R. and Kouzarides,T. (2003) The DNA methyltransferases associate with HP1 and the SUV39H1 histone methyltransferase. Nucleic Acids Res., 31, 2305-2312.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 2305-2312
-
-
Fuks, F.1
Hurd, P.J.2
Deplus, R.3
Kouzarides, T.4
-
93
-
-
0035873225
-
Dnmt3a binds deacetylases and is recruited by a sequence-specific repressor to silence transcription
-
Fuks,F., Burgers,W.A., Godin,N., Kasai,M. and Kouzarides,T. (2001) Dnmt3a binds deacetylases and is recruited by a sequence-specific repressor to silence transcription. EMBO J., 20, 2536-2544.
-
(2001)
EMBO J.
, vol.20
, pp. 2536-2544
-
-
Fuks, F.1
Burgers, W.A.2
Godin, N.3
Kasai, M.4
Kouzarides, T.5
-
94
-
-
32844459336
-
The Polycomb group protein EZH2 directly controls DNA methylation
-
Vire,E., Brenner,C., Deplus,R., Blanchon,L., Fraga,M., Didelot,C., Morey,L., Van Eynde,A., Bernard,D., Vanderwinden,J.M. et al. (2006) The Polycomb group protein EZH2 directly controls DNA methylation. Nature, 439, 871-874.
-
(2006)
Nature
, vol.439
, pp. 871-874
-
-
Vire, E.1
Brenner, C.2
Deplus, R.3
Blanchon, L.4
Fraga, M.5
Didelot, C.6
Morey, L.7
Van Eynde, A.8
Bernard, D.9
Vanderwinden, J.M.10
-
95
-
-
0016692220
-
X inactivation, differentiation, and DNA methylation
-
Riggs,A.D. (1975) X inactivation, differentiation, and DNA methylation. Cytogenet. Cell Genet., 14, 9-25.
-
(1975)
Cytogenet. Cell Genet
, vol.14
, pp. 9-25
-
-
Riggs, A.D.1
-
96
-
-
79959346470
-
Non-coding RNAs, epigenetic memory, and the passage of information to progeny
-
Morris,K.V. (2009) Non-coding RNAs, epigenetic memory, and the passage of information to progeny. RNA Biol., 6, 242-247.
-
(2009)
RNA Biol.
, vol.6
, pp. 242-247
-
-
Morris, K.V.1
-
97
-
-
82955240692
-
CpG hypermethylation of the C-myc promoter by dsRNA results in growth suppression
-
Mehndiratta,M., Palanichamy,J.K., Pal,A., Bhagat,M., Singh,A., Sinha,S. and Chattopadhyay,P. (2011) CpG hypermethylation of the C-myc promoter by dsRNA results in growth suppression. Mol. Pharm., 8, 2302-2309.
-
(2011)
Mol. Pharm.
, vol.8
, pp. 2302-2309
-
-
Mehndiratta, M.1
Palanichamy, J.K.2
Pal, A.3
Bhagat, M.4
Singh, A.5
Sinha, S.6
Chattopadhyay, P.7
-
98
-
-
78751580427
-
Stable suppression of gene expression by short interfering RNAs targeted to promoter in a mouse embryonal carcinoma stem cell line
-
Esmaeili,F., Bamdad,T. and Ghasemi,S. (2010) Stable suppression of gene expression by short interfering RNAs targeted to promoter in a mouse embryonal carcinoma stem cell line. In Vitro Cell. Dev. Biol. Anim., 46, 834-840.
-
(2010)
Vitro Cell. Dev. Biol. Anim.
, vol.46
, pp. 834-840
-
-
Esmaeili, F.1
Bamdad, T.2
Ghasemi, S.3
-
99
-
-
85015372182
-
Promoter targeting shRNA suppresses HIV-1 infection in vivo through transcriptional gene silencing
-
Suzuki,K., Hattori,S., Marks,K., Ahlenstiel,C., Maeda,Y., Ishida,T., Millington,M., Boyd,M., Symonds,G., Cooper,D.A. et al. (2013) Promoter targeting shRNA suppresses HIV-1 infection in vivo through transcriptional gene silencing. Mol. Ther. Nucleic acids, 2, e137.
-
(2013)
Mol. Ther. Nucleic Acids
, vol.2
, pp. e137
-
-
Suzuki, K.1
Hattori, S.2
Marks, K.3
Ahlenstiel, C.4
Maeda, Y.5
Ishida, T.6
Millington, M.7
Boyd, M.8
Symonds, G.9
Cooper, D.A.10
-
100
-
-
39849098733
-
Promoter-targeted siRNAs induce gene silencing of simian immunodeficiency virus (SIV) infection in vitro
-
Lim,H.G., Suzuki,K., Cooper,D.A. and Kelleher,A.D. (2008) Promoter-targeted siRNAs induce gene silencing of simian immunodeficiency virus (SIV) infection in vitro. Mol. Ther., 16, 565-570.
-
(2008)
Mol. Ther.
, vol.16
, pp. 565-570
-
-
Lim, H.G.1
Suzuki, K.2
Cooper, D.A.3
Kelleher, A.D.4
-
101
-
-
84958087384
-
RNA-directed epigenetic silencing of periostin inhibits cell motility
-
Lister,N.C., Clemson,M. and Morris,K.V. (2015) RNA-directed epigenetic silencing of periostin inhibits cell motility. R. Soc. Open Sci., 2, 140545.
-
(2015)
R. Soc. Open Sci.
, vol.2
, pp. 140545
-
-
Lister, N.C.1
Clemson, M.2
Morris, K.V.3
-
102
-
-
34249930701
-
Short hairpin RNA causes the methylation of transforming growth factor-beta receptor II promoter and silencing of the target gene in rat hepatic stellate cells
-
Kim,J.W., Zhang,Y.H., Zern,M.A., Rossi,J.J. and Wu,J. (2007) Short hairpin RNA causes the methylation of transforming growth factor-beta receptor II promoter and silencing of the target gene in rat hepatic stellate cells. Biochem. Biophys. Res. Commun., 359, 292-297.
-
(2007)
Biochem. Biophys. Res. Commun.
, vol.359
, pp. 292-297
-
-
Kim, J.W.1
Zhang, Y.H.2
Zern, M.A.3
Rossi, J.J.4
Wu, J.5
-
103
-
-
77956107879
-
Effect of chemical modifications on modulation of gene expression by duplex antigene RNAs that are complementary to non-coding transcripts at gene promoters
-
Watts,J.K., Yu,D., Charisse,K., Montaillier,C., Potier,P., Manoharan,M. and Corey,D.R. (2010) Effect of chemical modifications on modulation of gene expression by duplex antigene RNAs that are complementary to non-coding transcripts at gene promoters. Nucleic Acids Res., 38, 5242-5259.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 5242-5259
-
-
Watts, J.K.1
Yu, D.2
Charisse, K.3
Montaillier, C.4
Potier, P.5
Manoharan, M.6
Corey, D.R.7
-
104
-
-
84868347414
-
Chemically modified oligonucleotides modulate an epigenetically varied and transient form of transcription silencing of HIV-1 in human cells
-
Knowling,S.S.K., Turner,A.M., Uhlmann,E., Lehmann,T., Vollmer,J. and Morris,K.V. (2012) Chemically modified oligonucleotides modulate an epigenetically varied and transient form of transcription silencing of HIV-1 in human cells. Mol. Ther. Nucleic Acids, 1, e16.
-
(2012)
Mol. Ther. Nucleic Acids
, vol.1
, pp. e16
-
-
Knowling, S.S.K.1
Turner, A.M.2
Uhlmann, E.3
Lehmann, T.4
Vollmer, J.5
Morris, K.V.6
-
105
-
-
84925037469
-
Cell-specific RNA aptamer against human CCR5 specifically targets HIV-1 susceptible cells and inhibits HIV-1 infectivity
-
Zhou,J., Satheesan,S., Li,H., Weinberg,M.S., Morris,K.V., Burnett,J.C. and Rossi,J.J. (2015) Cell-specific RNA aptamer against human CCR5 specifically targets HIV-1 susceptible cells and inhibits HIV-1 infectivity. Chem. Biol., 22, 379-390.
-
(2015)
Chem. Biol.
, vol.22
, pp. 379-390
-
-
Zhou, J.1
Satheesan, S.2
Li, H.3
Weinberg, M.S.4
Morris, K.V.5
Burnett, J.C.6
Rossi, J.J.7
-
106
-
-
78751667739
-
An aptamer-siRNA chimera suppresses HIV-1 viral loads and protects from helper CD4(+) T cell decline in humanized mice
-
Neff,C.P., Zhou,J., Remling,L., Kuruvilla,J., Zhang,J., Li,H., Smith,D.D., Swiderski,P., Rossi,J.J. and Akkina,R. (2011) An aptamer-siRNA chimera suppresses HIV-1 viral loads and protects from helper CD4(+) T cell decline in humanized mice. Sci. Transl. Med., 3, 66ra66.
-
(2011)
Sci. Transl. Med.
, vol.3
, pp. 66
-
-
Neff, C.P.1
Zhou, J.2
Remling, L.3
Kuruvilla, J.4
Zhang, J.5
Li, H.6
Smith, D.D.7
Swiderski, P.8
Rossi, J.J.9
Akkina, R.10
-
107
-
-
70349239135
-
Efficient regulation of VEGF expression by promoter-targeted lentiviral shRNAs based on epigenetic mechanism: A novel example of epigenetherapy
-
Turunen,M.P., Lehtola,T., Heinonen,S.E., Assefa,G.S., Korpisalo,P., Girnary,R., Glass,C.K., Vaisanen,S. and Yla-Herttuala,S. (2009) Efficient regulation of VEGF expression by promoter-targeted lentiviral shRNAs based on epigenetic mechanism: a novel example of epigenetherapy. Circ. Res., 105, 604-609.
-
(2009)
Circ. Res.
, vol.105
, pp. 604-609
-
-
Turunen, M.P.1
Lehtola, T.2
Heinonen, S.E.3
Assefa, G.S.4
Korpisalo, P.5
Girnary, R.6
Glass, C.K.7
Vaisanen, S.8
Yla-Herttuala, S.9
-
108
-
-
84921340822
-
MYC regulates the non-coding transcriptome
-
Hart,J.R., Roberts,T.C., Weinberg,M.S., Morris,K.V. and Vogt,P.K. (2014) MYC regulates the non-coding transcriptome. Oncotarget, 5, 12543-12554.
-
(2014)
Oncotarget
, vol.5
, pp. 12543-12554
-
-
Hart, J.R.1
Roberts, T.C.2
Weinberg, M.S.3
Morris, K.V.4
Vogt, P.K.5
-
109
-
-
85026337327
-
Right ventricular long noncoding RNA expression in human heart failure
-
Di Salvo,T.G., Guo,Y., Su,Y.R., Clark,T., Brittain,E., Absi,T., Maltais,S. and Hemnes,A. (2015) Right ventricular long noncoding RNA expression in human heart failure. Pulm. Circ., 5, 135-161.
-
(2015)
Pulm. Circ.
, vol.5
, pp. 135-161
-
-
Di Salvo, T.G.1
Guo, Y.2
Su, Y.R.3
Clark, T.4
Brittain, E.5
Absi, T.6
Maltais, S.7
Hemnes, A.8
-
110
-
-
84890852686
-
Evolutionary conservation of long noncoding RNAs; Sequence, structure, function
-
Johnsson,P., Lipovich,L., Grander,D. and Morris,K.V. (2013) Evolutionary conservation of long noncoding RNAs; sequence, structure, function. Biochim. Biophys. Acta, 1840, 1063-1071.
-
(2013)
Biochim. Biophys. Acta
, vol.1840
, pp. 1063-1071
-
-
Johnsson, P.1
Lipovich, L.2
Grander, D.3
Morris, K.V.4
-
111
-
-
84929855423
-
The therapeutic application of CRISPR/Cas9 technologies for HIV
-
Saayman,S., Ali,S.A., Morris,K.V. and Weinberg,M.S. (2015) The therapeutic application of CRISPR/Cas9 technologies for HIV. Expert Opin. Biol. Ther., 15 819-830.
-
(2015)
Expert Opin. Biol. Ther.
, vol.15
, pp. 819-830
-
-
Saayman, S.1
Ali, S.A.2
Morris, K.V.3
Weinberg, M.S.4
-
112
-
-
84860615730
-
HIV-1-encoded antisense RNA suppresses viral replication for a prolonged period
-
Kobayashi-Ishihara,M., Yamagishi,M., Hara,T., Matsuda,Y., Takahashi,R., Miyake,A., Nakano,K., Yamochi,T., Ishida,T. and Watanabe,T. (2012) HIV-1-encoded antisense RNA suppresses viral replication for a prolonged period. Retrovirology, 9, 38.
-
(2012)
Retrovirology
, vol.9
, pp. 38
-
-
Kobayashi-Ishihara, M.1
Yamagishi, M.2
Hara, T.3
Matsuda, Y.4
Takahashi, R.5
Miyake, A.6
Nakano, K.7
Yamochi, T.8
Ishida, T.9
Watanabe, T.10
-
113
-
-
84859513087
-
A noncoding RNA antisense to moesin at 5p14 .1 in autism
-
Kerin,T., Ramanathan,A., Rivas,K., Grepo,N., Coetzee,G.A. and Campbell,D.B. (2012) A noncoding RNA antisense to moesin at 5p14.1 in autism. Sci. Transl. Med., 4, 128ra140.
-
(2012)
Sci. Transl. Med.
, vol.4
, pp. 128-140
-
-
Kerin, T.1
Ramanathan, A.2
Rivas, K.3
Grepo, N.4
Coetzee, G.A.5
Campbell, D.B.6
-
114
-
-
80052869283
-
LincRNAs act in the circuitry controlling pluripotency and differentiation
-
Guttman,M., Donaghey,J., Carey,B.W., Garber,M., Grenier,J.K., Munson,G., Young,G., Lucas,A.B., Ach,R., Bruhn,L. et al. (2011) lincRNAs act in the circuitry controlling pluripotency and differentiation. Nature, 477, 295-300.
-
(2011)
Nature
, vol.477
, pp. 295-300
-
-
Guttman, M.1
Donaghey, J.2
Carey, B.W.3
Garber, M.4
Grenier, J.K.5
Munson, G.6
Young, G.7
Lucas, A.B.8
Ach, R.9
Bruhn, L.10
-
115
-
-
78649467088
-
Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells
-
Loewer,S., Cabili,M.N., Guttman,M., Loh,Y.H., Thomas,K., Park,I.H., Garber,M., Curran,M., Onder,T., Agarwal,S. et al. (2010) Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells. Nat. Genet., 42, 1113-1117.
-
(2010)
Nat. Genet
, vol.42
, pp. 1113-1117
-
-
Loewer, S.1
Cabili, M.N.2
Guttman, M.3
Loh, Y.H.4
Thomas, K.5
Park, I.H.6
Garber, M.7
Curran, M.8
Onder, T.9
Agarwal, S.10
-
116
-
-
84872135457
-
Control of somatic tissue differentiation by the long non-coding RNA TINCR
-
Kretz,M., Siprashvili,Z., Chu,C., Webster,D.E., Zehnder,A., Qu,K., Lee,C.S., Flockhart,R.J., Groff,A.F., Chow,J. et al. (2013) Control of somatic tissue differentiation by the long non-coding RNA TINCR. Nature, 493, 231-235.
-
(2013)
Nature
, vol.493
, pp. 231-235
-
-
Kretz, M.1
Siprashvili, Z.2
Chu, C.3
Webster, D.E.4
Zehnder, A.5
Qu, K.6
Lee, C.S.7
Flockhart, R.J.8
Groff, A.F.9
Chow, J.10
-
117
-
-
65549130010
-
Both strands of siRNA have potential to guide posttranscriptional gene silencing in mammalian cells
-
Wei,J.X., Yang,J., Sun,J.F., Jia,L.T., Zhang,Y., Zhang,H.Z., Li,X., Meng,Y.L., Yao,L.B. and Yang,A.G. (2009) Both strands of siRNA have potential to guide posttranscriptional gene silencing in mammalian cells. PLoS One, 4, e5382.
-
(2009)
PLoS One
, vol.4
, pp. e5382
-
-
Wei, J.X.1
Yang, J.2
Sun, J.F.3
Jia, L.T.4
Zhang, Y.5
Zhang, H.Z.6
Li, X.7
Meng, Y.L.8
Yao, L.B.9
Yang, A.G.10
-
118
-
-
49449117338
-
Antisense transcripts are targets for activating small RNAs
-
Schwartz,J.C., Younger,S.T., Nguyen,N.B., Hardy,D.B., Monia,B.P., Corey,D.R. and Janowski,B.A. (2008) Antisense transcripts are targets for activating small RNAs. Nat. Struct. Mol. Biol., 15, 842-848.
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 842-848
-
-
Schwartz, J.C.1
Younger, S.T.2
Nguyen, N.B.3
Hardy, D.B.4
Monia, B.P.5
Corey, D.R.6
Janowski, B.A.7
-
119
-
-
33847081733
-
Activating gene expression in mammalian cells with promoter-targeted duplex RNAs
-
Janowski,B.A., Younger,S.T., Hardy,D.B., Ram,R., Huffman,K.E. and Corey,D.R. (2007) Activating gene expression in mammalian cells with promoter-targeted duplex RNAs. Nat. Chem. Biol., 3, 166-173.
-
(2007)
Nat. Chem. Biol.
, vol.3
, pp. 166-173
-
-
Janowski, B.A.1
Younger, S.T.2
Hardy, D.B.3
Ram, R.4
Huffman, K.E.5
Corey, D.R.6
-
120
-
-
33751251990
-
Small dsRNAs induce transcriptional activation in human cells
-
Li,L.C., Okino,S.T., Zhao,H., Pookot,D., Place,R.F., Urakami,S., Enokida,H. and Dahiya,R. (2006) Small dsRNAs induce transcriptional activation in human cells. Proc. Natl. Acad. Sci. U.S.A., 103, 17337-17342.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A
, vol.103
, pp. 17337-17342
-
-
Li, L.C.1
Okino, S.T.2
Zhao, H.3
Pookot, D.4
Place, R.F.5
Urakami, S.6
Enokida, H.7
Dahiya, R.8
-
121
-
-
40349094597
-
MicroRNA-373 induces expression of genes with complementary promoter sequences
-
Place,R.F., Li,L.C., Pookot,D., Noonan,E.J. and Dahiya,R. (2008) MicroRNA-373 induces expression of genes with complementary promoter sequences. Proc. Natl. Acad. Sci. U.S.A., 105, 1608-1613.
-
(2008)
Proc. Natl. Acad. Sci. U.S.A
, vol.105
, pp. 1608-1613
-
-
Place, R.F.1
Li, L.C.2
Pookot, D.3
Noonan, E.J.4
Dahiya, R.5
-
122
-
-
84896354119
-
Epigenetic upregulation of endogenous VEGF-A reduces myocardial infarct size in mice
-
Turunen,M.P., Husso,T., Musthafa,H., Laidinen,S., Dragneva,G., Laham-Karam,N., Honkanen,S., Paakinaho,A., Laakkonen,J.P., Gao,E. et al. (2014) Epigenetic upregulation of endogenous VEGF-A reduces myocardial infarct size in mice. PLoS One, 9, e89979.
-
(2014)
PLoS One
, vol.9
, pp. e89979
-
-
Turunen, M.P.1
Husso, T.2
Musthafa, H.3
Laidinen, S.4
Dragneva, G.5
Laham-Karam, N.6
Honkanen, S.7
Paakinaho, A.8
Laakkonen, J.P.9
Gao, E.10
-
123
-
-
0014690698
-
Gene regulation for higher cells: A theory
-
Britten,R.J. and Davidson,E.H. (1969) Gene regulation for higher cells: a theory. Science, 165, 349-357.
-
(1969)
Science
, vol.165
, pp. 349-357
-
-
Britten, R.J.1
Davidson, E.H.2
-
124
-
-
0015070886
-
Repetitive and non-repetitive DNA sequences and a speculation on the origins of evolutionary novelty
-
Britten,R.J. and Davidson,E.H. (1971) Repetitive and non-repetitive DNA sequences and a speculation on the origins of evolutionary novelty. Q. Rev. Biol., 66, 111-138.
-
(1971)
Q. Rev. Biol.
, vol.66
, pp. 111-138
-
-
Britten, R.J.1
Davidson, E.H.2
-
125
-
-
78649540637
-
Induction of DNA methylation and gene silencing by short interfering RNAs in human cells
-
Taira,K. (2006) Induction of DNA methylation and gene silencing by short interfering RNAs in human cells. Nature, 441, 1176.
-
(2006)
Nature
, vol.441
, pp. 1176
-
-
Taira, K.1
-
126
-
-
15544363403
-
Specific and potent RNAi in the nucleus of human cells
-
Robb,G.B., Brown,K.M., Khurana,J. and Rana,T.M. (2005) Specific and potent RNAi in the nucleus of human cells. Nat. Struct. Mol. Biol., 12, 133-137.
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 133-137
-
-
Robb, G.B.1
Brown, K.M.2
Khurana, J.3
Rana, T.M.4
-
127
-
-
44149126227
-
A multifunctional human Argonaute2-specific monoclonal antibody
-
Rudel,S., Flatley,A., Weinmann,L., Kremmer,E. and Meister,G. (2008) A multifunctional human Argonaute2-specific monoclonal antibody. RNA, 14, 1244-1253.
-
(2008)
RNA
, vol.14
, pp. 1244-1253
-
-
Rudel, S.1
Flatley, A.2
Weinmann, L.3
Kremmer, E.4
Meister, G.5
-
128
-
-
84867230570
-
Argonaute proteins couple chromatin silencing to alternative splicing
-
Ameyar-Zazoua,M., Rachez,C., Souidi,M., Robin,P., Fritsch,L., Young,R., Morozova,N., Fenouil,R., Descostes,N., Andrau,J.C. et al. (2012) Argonaute proteins couple chromatin silencing to alternative splicing. Nat. Struct. Mol. Biol., 19, 998-1004.
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 998-1004
-
-
Ameyar-Zazoua, M.1
Rachez, C.2
Souidi, M.3
Robin, P.4
Fritsch, L.5
Young, R.6
Morozova, N.7
Fenouil, R.8
Descostes, N.9
Andrau, J.C.10
-
129
-
-
84914674878
-
Argonaute-1 binds transcriptional enhancers and controls constitutive and alternative splicing in human cells
-
Allo,M., Agirre,E., Bessonov,S., Bertucci,P., Gomez Acuna,L., Buggiano,V., Bellora,N., Singh,B., Petrillo,E., Blaustein,M. et al. (2014) Argonaute-1 binds transcriptional enhancers and controls constitutive and alternative splicing in human cells. Proc. Natl. Acad. Sci. U.S.A., 111, 15622-15629.
-
(2014)
Proc. Natl. Acad. Sci. U.S.A
, vol.111
, pp. 15622-15629
-
-
Allo, M.1
Agirre, E.2
Bessonov, S.3
Bertucci, P.4
Gomez Acuna, L.5
Buggiano, V.6
Bellora, N.7
Singh, B.8
Petrillo, E.9
Blaustein, M.10
-
130
-
-
84907030636
-
Analysis of nuclear RNA interference in human cells by subcellular fractionation and Argonaute loading
-
Gagnon,K.T., Li,L., Janowski,B.A. and Corey,D.R. (2014) Analysis of nuclear RNA interference in human cells by subcellular fractionation and Argonaute loading. Nat. Protoc., 9, 2045-2060.
-
(2014)
Nat. Protoc.
, vol.9
, pp. 2045-2060
-
-
Gagnon, K.T.1
Li, L.2
Janowski, B.A.3
Corey, D.R.4
-
131
-
-
84892544892
-
RNAi factors are present and active in human cell nuclei
-
Gagnon,K.T., Li,L., Chu,Y., Janowski,B.A. and Corey,D.R. (2014) RNAi factors are present and active in human cell nuclei. Cell Rep., 6, 211-221.
-
(2014)
Cell Rep.
, vol.6
, pp. 211-221
-
-
Gagnon, K.T.1
Li, L.2
Chu, Y.3
Janowski, B.A.4
Corey, D.R.5
-
132
-
-
84861859517
-
ENCODE whole-genome data in the UCSC Genome Browser: Update 2012
-
Rosenbloom,K.R., Dreszer,T.R., Long,J.C., Malladi,V.S., Sloan,C.A., Raney,B.J., Cline,M.S., Karolchik,D., Barber,G.P., Clawson,H. et al. (2012) ENCODE whole-genome data in the UCSC Genome Browser: update 2012. Nucleic Acids Res., 40, D912-D917.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D912-D917
-
-
Rosenbloom, K.R.1
Dreszer, T.R.2
Long, J.C.3
Malladi, V.S.4
Sloan, C.A.5
Raney, B.J.6
Cline, M.S.7
Karolchik, D.8
Barber, G.P.9
Clawson, H.10
-
133
-
-
84865812140
-
Genomics. ENCODE project writes eulogy for junk DNA
-
Pennisi,E. (2012) Genomics. ENCODE project writes eulogy for junk DNA. Science, 337, 1159, 1161.
-
(2012)
Science
, vol.337
, pp. 1159-1161
-
-
Pennisi, E.1
-
134
-
-
84865726286
-
The GENCODE pseudogene resource
-
Pei,B., Sisu,C., Frankish,A., Howald,C., Habegger,L.,Mu,X.J., Harte,R., Balasubramanian,S., Tanzer,A., Diekhans,M. et al. (2012) The GENCODE pseudogene resource. Genome Biol., 13, R51.
-
(2012)
Genome Biol.
, vol.13
, pp. R51
-
-
Pei, B.1
Sisu, C.2
Frankish, A.3
Howald, C.4
Habegger, L.5
Mu, X.J.6
Harte, R.7
Balasubramanian, S.8
Tanzer, A.9
Diekhans, M.10
-
135
-
-
84865757142
-
Landscape of transcription in human cells
-
Djebali,S., Davis,C.A., Merkel,A., Dobin,A., Lassmann,T., Mortazavi,A., Tanzer,A., Lagarde,J., Lin,W., Schlesinger,F. et al. (2012) Landscape of transcription in human cells. Nature, 489, 101-108.
-
(2012)
Nature
, vol.489
, pp. 101-108
-
-
Djebali, S.1
Davis, C.A.2
Merkel, A.3
Dobin, A.4
Lassmann, T.5
Mortazavi, A.6
Tanzer, A.7
Lagarde, J.8
Lin, W.9
Schlesinger, F.10
-
136
-
-
84865727393
-
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
-
Derrien,T., Johnson,R., Bussotti,G., Tanzer,A., Djebali,S., Tilgner,H., Guernec,G., Martin,D., Merkel,A., Knowles,D.G. et al. (2012) The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res., 22, 1775-1789.
-
(2012)
Genome Res.
, vol.22
, pp. 1775-1789
-
-
Derrien, T.1
Johnson, R.2
Bussotti, G.3
Tanzer, A.4
Djebali, S.5
Tilgner, H.6
Guernec, G.7
Martin, D.8
Merkel, A.9
Knowles, D.G.10
-
137
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
Bernstein,B.E., Birney,E., Dunham,I., Green,E.D., Gunter,C. and Snyder,M. (2012) An integrated encyclopedia of DNA elements in the human genome. Nature, 489, 57-74.
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
Bernstein, B.E.1
Birney, E.2
Dunham, I.3
Green, E.D.4
Gunter, C.5
Snyder, M.6
-
138
-
-
7444260846
-
The ENCODE (ENCyclopedia of DNA Elements) Project
-
Consortium,E.P. (2004) The ENCODE (ENCyclopedia Of DNA Elements) Project. Science, 306, 636-640.
-
(2004)
Science
, vol.306
, pp. 636-640
-
-
Consortium, E.P.1
-
139
-
-
84861904178
-
Genome regulation by long noncoding RNAs
-
Rinn,J.L. and Chang,H.Y. (2012) Genome regulation by long noncoding RNAs. Annu. Rev. Biochem., 81, 145-166.
-
(2012)
Annu. Rev. Biochem.
, vol.81
, pp. 145-166
-
-
Rinn, J.L.1
Chang, H.Y.2
-
140
-
-
84984944992
-
Silencing gene expression by short interfering RNA targeting NF-kB binding site within 5 LTR
-
Boston
-
Suzuki,K., Suter,S., Ward,R., Cooper,D.A. and Kelleher,A.D. (2003) Silencing gene expression by short interfering RNA targeting NF-kB binding site within 5 LTR. In: 10th Conference on Retroviruses and Opportunistic Infections, Boston.
-
(2003)
10th Conference on Retroviruses and Opportunistic Infections
-
-
Suzuki, K.1
Suter, S.2
Ward, R.3
Cooper, D.A.4
Kelleher, A.D.5
-
141
-
-
63649088662
-
Mobilization-competent lentiviral vector-mediated sustained transcriptional modulation of HIV-1 expression
-
Turner,A.M., De La Cruz,J. and Morris,K.V. (2009) Mobilization-competent Lentiviral Vector-mediated Sustained Transcriptional Modulation of HIV-1 Expression. Mol. Ther., 17, 360-368.
-
(2009)
Mol. Ther.
, vol.17
, pp. 360-368
-
-
Turner, A.M.1
De La Cruz, J.2
Morris, K.V.3
-
142
-
-
77954098792
-
Controlling transcription with noncoding RNAs in mammalian cells
-
Turner,A.M. and Morris,K.V. (2010) Controlling transcription with noncoding RNAs in mammalian cells. Biotechniques, 48, ix-xvi.
-
(2010)
Biotechniques
, vol.48
, pp. ix-xvi
-
-
Turner, A.M.1
Morris, K.V.2
-
143
-
-
84892472993
-
Long-term suppression of HIV-1C virus production in human peripheral blood mononuclear cells by LTR heterochromatization with a short double-stranded RNA
-
Singh,A., Palanichamy,J.K., Ramalingam,P., Kassab,M.A., Bhagat,M., Andrabi,R., Luthra,K., Sinha,S. and Chattopadhyay,P. (2013) Long-term suppression of HIV-1C virus production in human peripheral blood mononuclear cells by LTR heterochromatization with a short double-stranded RNA. J. Antimicrob. Chemother., 69, 404-415.
-
(2013)
J. Antimicrob. Chemother.
, vol.69
, pp. 404-415
-
-
Singh, A.1
Palanichamy, J.K.2
Ramalingam, P.3
Kassab, M.A.4
Bhagat, M.5
Andrabi, R.6
Luthra, K.7
Sinha, S.8
Chattopadhyay, P.9
-
144
-
-
84946588915
-
Novel RNA duplex locks HIV-1 in a latent state via chromatin-mediated transcriptional silencing
-
Ahlenstiel,C., Mendez,C., Lim,S.T., Marks,K., Turville,S., Cooper,D.A., Kelleher,A.D. and Suzuki,K. (2015) Novel RNA duplex locks HIV-1 in a latent state via chromatin-mediated transcriptional silencing. Mol. Ther. Nucleic Acids, 4, e261.
-
(2015)
Mol. Ther. Nucleic Acids
, vol.4
, pp. e261
-
-
Ahlenstiel, C.1
Mendez, C.2
Lim, S.T.3
Marks, K.4
Turville, S.5
Cooper, D.A.6
Kelleher, A.D.7
Suzuki, K.8
-
145
-
-
55549148766
-
Effect of 27nt small RNA on endothelial nitric-oxide synthase expression
-
Zhang,M.X., Zhang,C., Shen,Y.H., Wang,J., Li,X.N., Chen,L., Zhang,Y., Coselli,J.S. and Wang,X.L. (2008) Effect of 27nt small RNA on endothelial nitric-oxide synthase expression. Mol. Biol. Cell, 19, 3997-4005.
-
(2008)
Mol. Biol. Cell
, vol.19
, pp. 3997-4005
-
-
Zhang, M.X.1
Zhang, C.2
Shen, Y.H.3
Wang, J.4
Li, X.N.5
Chen, L.6
Zhang, Y.7
Coselli, J.S.8
Wang, X.L.9
-
146
-
-
34548155531
-
Directing DNA methylation to inhibit gene expression
-
Hoffman,A.R. and Hu,J.F. (2006) Directing DNA methylation to inhibit gene expression. Cell. Mol. Neurobiol., 26, 425-438.
-
(2006)
Cell. Mol. Neurobiol.
, vol.26
, pp. 425-438
-
-
Hoffman, A.R.1
Hu, J.F.2
-
147
-
-
67650299463
-
Control of alternative splicing through siRNA-mediated transcriptional gene silencing
-
Allo,M., Buggiano,V., Fededa,J.P., Petrillo,E., Schor,I., de la Mata,M., Agirre,E., Plass,M., Eyras,E., Elela,S.A. et al. (2009) Control of alternative splicing through siRNA-mediated transcriptional gene silencing. Nat. Struct. Mol. Biol., 16, 717-724.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 717-724
-
-
Allo, M.1
Buggiano, V.2
Fededa, J.P.3
Petrillo, E.4
Schor, I.5
De La Mata, M.6
Agirre, E.7
Plass, M.8
Eyras, E.9
Elela, S.A.10
-
148
-
-
4444314502
-
Double-stranded siRNA targeted to the huntingtin gene does not induce DNA methylation
-
Park,C.W., Chen,Z., Kren,B.T. and Steer,C.J. (2004) Double-stranded siRNA targeted to the huntingtin gene does not induce DNA methylation. Biochem. Biophys. Res. Commun., 323, 275-280.
-
(2004)
Biochem. Biophys. Res. Commun.
, vol.323
, pp. 275-280
-
-
Park, C.W.1
Chen, Z.2
Kren, B.T.3
Steer, C.J.4
-
149
-
-
20844434177
-
Transcriptional silencing of nonsense codon-containing immunoglobulin minigenes
-
Buhler,M., Mohn,F., Stalder,L. and Muhlemann,O. (2005) Transcriptional silencing of nonsense codon-containing immunoglobulin minigenes. Mol. Cell, 18, 307-317.
-
(2005)
Mol. Cell
, vol.18
, pp. 307-317
-
-
Buhler, M.1
Mohn, F.2
Stalder, L.3
Muhlemann, O.4
-
150
-
-
49749133953
-
Mechanistic principles of chromatin remodeling guided by siRNAs and miRNAs
-
Gonzalez,S., Pisano,D.G. and Serrano,M. (2008) Mechanistic principles of chromatin remodeling guided by siRNAs and miRNAs. Cell Cycle, 7, 2601-2608.
-
(2008)
Cell Cycle
, vol.7
, pp. 2601-2608
-
-
Gonzalez, S.1
Pisano, D.G.2
Serrano, M.3
-
151
-
-
34250212156
-
The proximal GC-rich region of p16(INK4a) gene promoter plays a role in its transcriptional regulation
-
Wang,X., Feng,Y., Pan,L., Wang,Y., Xu,X., Lu,J. and Huang,B. (2007) The proximal GC-rich region of p16(INK4a) gene promoter plays a role in its transcriptional regulation. Mol. Cell. Biochem., 301, 259-266.
-
(2007)
Mol. Cell. Biochem.
, vol.301
, pp. 259-266
-
-
Wang, X.1
Feng, Y.2
Pan, L.3
Wang, Y.4
Xu, X.5
Lu, J.6
Huang, B.7
-
152
-
-
34547095270
-
Small interfering RNA directed reversal of urokinase plasminogen activator demethylation inhibits prostate tumor growth and metastasis
-
Pulukuri,S.M. and Rao,J.S. (2007) Small interfering RNA directed reversal of urokinase plasminogen activator demethylation inhibits prostate tumor growth and metastasis. Cancer Res., 67, 6637-6646.
-
(2007)
Cancer Res.
, vol.67
, pp. 6637-6646
-
-
Pulukuri, S.M.1
Rao, J.S.2
-
153
-
-
77955900706
-
Transcriptional regulation by small RNAs at sequences downstream from 3 gene termini
-
Yue,X., Schwartz,J.C., Chu,Y., Younger,S.T., Gagnon,K.T., Elbashir,S., Janowski,B.A. and Corey,D.R. (2010) Transcriptional regulation by small RNAs at sequences downstream from 3 gene termini. Nat. Chem. Biol., 6, 621-629.
-
(2010)
Nat. Chem. Biol.
, vol.6
, pp. 621-629
-
-
Yue, X.1
Schwartz, J.C.2
Chu, Y.3
Younger, S.T.4
Gagnon, K.T.5
Elbashir, S.6
Janowski, B.A.7
Corey, D.R.8
-
154
-
-
78649874963
-
Involvement of argonaute proteins in gene silencing and activation by RNAs complementary to a non-coding transcript at the progesterone receptor promoter
-
Chu,Y., Yue,X., Younger,S.T., Janowski,B.A. and Corey,D.R. (2010) Involvement of argonaute proteins in gene silencing and activation by RNAs complementary to a non-coding transcript at the progesterone receptor promoter. Nucleic Acids Res., 38, 7736-7748.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 7736-7748
-
-
Chu, Y.1
Yue, X.2
Younger, S.T.3
Janowski, B.A.4
Corey, D.R.5
-
155
-
-
84927628063
-
AGO2 and SETDB1 cooperate in promoter-targeted transcriptional silencing of the androgen receptor gene
-
Cho,S., Park,J.S. and Kang,Y.K. (2014) AGO2 and SETDB1 cooperate in promoter-targeted transcriptional silencing of the androgen receptor gene. Nucleic Acids Res., 42, 13545-13556.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 13545-13556
-
-
Cho, S.1
Park, J.S.2
Kang, Y.K.3
-
156
-
-
84880281261
-
An algorithm for generating small RNAs capable of epigenetically modulating transcriptional gene silencing and activation in human cells
-
Ackley,A., Lenox,A., Stapleton,K., Knowling,S., Lu,T., Sabir,K.S., Vogt,P.K. and Morris,K.V. (2013) An algorithm for generating small RNAs capable of epigenetically modulating transcriptional gene silencing and activation in human cells. Mol. Ther. Nucleic Acids, 2, e104.
-
(2013)
Mol. Ther. Nucleic Acids
, vol.2
, pp. e104
-
-
Ackley, A.1
Lenox, A.2
Stapleton, K.3
Knowling, S.4
Lu, T.5
Sabir, K.S.6
Vogt, P.K.7
Morris, K.V.8
-
157
-
-
84907073094
-
Combination of hepatocyte specific delivery and transformation dependent expression of shRNA inducing transcriptional gene silencing of c-Myc promoter in hepatocellular carcinoma cells
-
Zakaria,M.K., Khan,I., Mani,P., Chattopadhyay,P., Sarkar,D.P. and Sinha,S. (2014) Combination of hepatocyte specific delivery and transformation dependent expression of shRNA inducing transcriptional gene silencing of c-Myc promoter in hepatocellular carcinoma cells. BMC Cancer, 14, 582.
-
(2014)
BMC Cancer
, vol.14
, pp. 582
-
-
Zakaria, M.K.1
Khan, I.2
Mani, P.3
Chattopadhyay, P.4
Sarkar, D.P.5
Sinha, S.6
-
158
-
-
77954568176
-
Silencing of integrated human papillomavirus-16 oncogenes by small interfering RNA-mediated heterochromatization
-
Palanichamy,J.K., Mehndiratta,M., Bhagat,M., Ramalingam,P., Das,B., Das,P., Sinha,S. and Chattopadhyay,P. (2010) Silencing of integrated human papillomavirus-16 oncogenes by small interfering RNA-mediated heterochromatization. Mol. Cancer Ther., 9, 2114-2122.
-
(2010)
Mol. Cancer Ther.
, vol.9
, pp. 2114-2122
-
-
Palanichamy, J.K.1
Mehndiratta, M.2
Bhagat, M.3
Ramalingam, P.4
Das, B.5
Das, P.6
Sinha, S.7
Chattopadhyay, P.8
-
159
-
-
84868364985
-
Small RNA-mediated epigenetic myostatin silencing
-
Roberts,T.C., Andaloussi,S.E., Morris,K.V., McClorey,G. and Wood,M.J. (2012) Small RNA-mediated epigenetic myostatin silencing. Mol. Ther. Nucleic Acids, 1, e23.
-
(2012)
Mol. Ther. Nucleic Acids
, vol.1
, pp. e23
-
-
Roberts, T.C.1
Andaloussi, S.E.2
Morris, K.V.3
McClorey, G.4
Wood, M.J.5
-
160
-
-
48049091385
-
Investigation of transcriptional gene silencing and mechanism induced by shRNAs targeted to RUNX3 in vitro
-
Feng,X.Z., He,X.S., Zhuang,Y.Z., Luo,Q., Jiang,J.H., Yang,S., Tang,X.F., Liu,J.L. and Chen,T. (2008) Investigation of transcriptional gene silencing and mechanism induced by shRNAs targeted to RUNX3 in vitro. World J. Gastroenterol., 14, 3006-3014.
-
(2008)
World J. Gastroenterol.
, vol.14
, pp. 3006-3014
-
-
Feng, X.Z.1
He, X.S.2
Zhuang, Y.Z.3
Luo, Q.4
Jiang, J.H.5
Yang, S.6
Tang, X.F.7
Liu, J.L.8
Chen, T.9
-
161
-
-
35148864569
-
Vitro c-met inhibition by antisense RNA and plasmid-based RNAi down-modulates migration and invasion of hepatocellular carcinoma cells
-
Salvi,A., Arici,B., Portolani,N., Giulini,S.M., De Petro,G. and Barlati,S. (2007) In vitro c-met inhibition by antisense RNA and plasmid-based RNAi down-modulates migration and invasion of hepatocellular carcinoma cells. Int. J. Oncol., 31, 451-460.
-
(2007)
Int. J. Oncol.
, vol.31
, pp. 451-460
-
-
Salvi, A.1
Arici, B.2
Portolani, N.3
Giulini, S.M.4
De Petro, G.5
Barlati, S.6
-
162
-
-
84857377246
-
Small RNAs targeting transcription start site induce heparanase silencing through interference with transcription initiation in human cancer cells
-
Jiang,G., Zheng,L., Pu,J., Mei,H., Zhao,J., Huang,K., Zeng,F. and Tong,Q. (2012) Small RNAs targeting transcription start site induce heparanase silencing through interference with transcription initiation in human cancer cells. PLoS One, 7, e31379.
-
(2012)
PLoS One
, vol.7
, pp. e31379
-
-
Jiang, G.1
Zheng, L.2
Pu, J.3
Mei, H.4
Zhao, J.5
Huang, K.6
Zeng, F.7
Tong, Q.8
-
163
-
-
33644854871
-
A specific CpG site demethylation in the human interleukin 2 gene promoter is an epigenetic memory
-
Murayama,A., Sakura,K., Nakama,M., Yasuzawa-Tanaka,K., Fujita,E., Tateishi,Y., Wang,Y., Ushijima,T., Baba,T., Shibuya,K. et al. (2006) A specific CpG site demethylation in the human interleukin 2 gene promoter is an epigenetic memory. EMBO J., 25, 1081-1092.
-
(2006)
EMBO J.
, vol.25
, pp. 1081-1092
-
-
Murayama, A.1
Sakura, K.2
Nakama, M.3
Yasuzawa-Tanaka, K.4
Fujita, E.5
Tateishi, Y.6
Wang, Y.7
Ushijima, T.8
Baba, T.9
Shibuya, K.10
-
164
-
-
65549158866
-
Transcriptional inhibition of Hoxd4 expression by miRNA-10a in human breast cancer cells
-
Tan,Y., Zhang,B., Wu,T., Skogerbo,G., Zhu,X., Guo,X., He,S. and Chen,R. (2009) Transcriptional inhibition of Hoxd4 expression by miRNA-10a in human breast cancer cells. BMC Mol. Biol., 10, 12.
-
(2009)
BMC Mol. Biol.
, vol.10
, pp. 12
-
-
Tan, Y.1
Zhang, B.2
Wu, T.3
Skogerbo, G.4
Zhu, X.5
Guo, X.6
He, S.7
Chen, R.8
-
165
-
-
42449121863
-
Identification of functional microRNAs released through asymmetrical processing of HIV-1 TAR element
-
Ouellet,D.L., Plante,I., Landry,P., Barat,C., Janelle,M.E., Flamand,L., Tremblay,M.J. and Provost,P. (2008) Identification of functional microRNAs released through asymmetrical processing of HIV-1 TAR element. Nucleic Acids Res., 36, 2353-2365.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 2353-2365
-
-
Ouellet, D.L.1
Plante, I.2
Landry, P.3
Barat, C.4
Janelle, M.E.5
Flamand, L.6
Tremblay, M.J.7
Provost, P.8
-
166
-
-
27644525713
-
Antisense transcription and heterochromatin at the DM1 CTG repeats are constrained by CTCF
-
Cho,D.H., Thienes,C.P., Mahoney,S.E., Analau,E., Filippova,G.N. and Tapscott,S.J. (2005) Antisense transcription and heterochromatin at the DM1 CTG repeats are constrained by CTCF. Mol. Cell, 20, 483-489.
-
(2005)
Mol. Cell
, vol.20
, pp. 483-489
-
-
Cho, D.H.1
Thienes, C.P.2
Mahoney, S.E.3
Analau, E.4
Filippova, G.N.5
Tapscott, S.J.6
-
167
-
-
27644466623
-
Herpesviral latency-associated transcript gene promotes assembly of heterochromatin on viral lytic-gene promoters in latent infection
-
Wang,Q.Y., Zhou,C., Johnson,K.E., Colgrove,R.C., Coen,D.M. and Knipe,D.M. (2005) Herpesviral latency-associated transcript gene promotes assembly of heterochromatin on viral lytic-gene promoters in latent infection. Proc. Natl. Acad. Sci. U.S.A., 102, 16055-16059.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A
, vol.102
, pp. 16055-16059
-
-
Wang, Q.Y.1
Zhou, C.2
Johnson, K.E.3
Colgrove, R.C.4
Coen, D.M.5
Knipe, D.M.6
-
168
-
-
77955757309
-
Kcnq1ot1 noncoding RNA mediates transcriptional gene silencing by interacting with Dnmt1
-
Mohammad,F., Mondal,T., Guseva,N., Pandey,G.K. and Kanduri,C. (2010) Kcnq1ot1 noncoding RNA mediates transcriptional gene silencing by interacting with Dnmt1. Development, 137, 2493-2499.
-
(2010)
Development
, vol.137
, pp. 2493-2499
-
-
Mohammad, F.1
Mondal, T.2
Guseva, N.3
Pandey, G.K.4
Kanduri, C.5
-
169
-
-
84879462680
-
Androgen-responsive long noncoding RNA CTBP1-AS promotes prostate cancer
-
Takayama,K., Horie-Inoue,K., Katayama,S., Suzuki,T., Tsutsumi,S., Ikeda,K., Urano,T., Fujimura,T., Takagi,K., Takahashi,S. et al. (2013) Androgen-responsive long noncoding RNA CTBP1-AS promotes prostate cancer. EMBO J., 32, 1665-1680.
-
(2013)
EMBO J.
, vol.32
, pp. 1665-1680
-
-
Takayama, K.1
Horie-Inoue, K.2
Katayama, S.3
Suzuki, T.4
Tsutsumi, S.5
Ikeda, K.6
Urano, T.7
Fujimura, T.8
Takagi, K.9
Takahashi, S.10
-
170
-
-
36949088975
-
An unstable intermediate carrying information from genes to ribosomes for protein synthesis
-
Brenner,S., Jacob,F. and Meselson,M. (1961) An unstable intermediate carrying information from genes to ribosomes for protein synthesis. Nature, 190, 576-581.
-
(1961)
Nature
, vol.190
, pp. 576-581
-
-
Brenner, S.1
Jacob, F.2
Meselson, M.3
-
171
-
-
0344622123
-
Spliced segments at the 5 terminus of adenovirus 2 late mRNA
-
Berget,S.M., Moore,C. and Sharp,P.A. (1977) Spliced segments at the 5 terminus of adenovirus 2 late mRNA. Proc. Natl. Acad. Sci. U.S.A., 74, 3171-3175.
-
(1977)
Proc. Natl. Acad. Sci. U.S.A
, vol.74
, pp. 3171-3175
-
-
Berget, S.M.1
Moore, C.2
Sharp, P.A.3
-
172
-
-
0017688583
-
An amazing sequence arrangement at the 5 ends of adenovirus 2 messenger RNA
-
Chow,L.T., Gelinas,R.E., Broker,T.R. and Roberts,R.J. (1977) An amazing sequence arrangement at the 5 ends of adenovirus 2 messenger RNA. Cell, 12, 1-8.
-
(1977)
Cell
, vol.12
, pp. 1-8
-
-
Chow, L.T.1
Gelinas, R.E.2
Broker, T.R.3
Roberts, R.J.4
-
173
-
-
0025012640
-
The product of the H19 gene may function as an RNA
-
Brannan,C.I., Dees,E.C., Ingram,R.S. and Tilghman,S.M. (1990) The product of the H19 gene may function as an RNA. Mol. Cell. Biol., 10, 28-36.
-
(1990)
Mol. Cell. Biol.
, vol.10
, pp. 28-36
-
-
Brannan, C.I.1
Dees, E.C.2
Ingram, R.S.3
Tilghman, S.M.4
-
174
-
-
0026489906
-
The product of the mouse Xist gene is a 15 kb inactive X-specific transcript containing no conserved ORF and located in the nucleus
-
Brockdorff,N., Ashworth,A., Kay,G.F., McCabe,V.M., Norris,D.P., Cooper,P.J., Swift,S. and Rastan,S. (1992) The product of the mouse Xist gene is a 15 kb inactive X-specific transcript containing no conserved ORF and located in the nucleus. Cell, 71, 515-526.
-
(1992)
Cell
, vol.71
, pp. 515-526
-
-
Brockdorff, N.1
Ashworth, A.2
Kay, G.F.3
McCabe, V.M.4
Norris, D.P.5
Cooper, P.J.6
Swift, S.7
Rastan, S.8
-
175
-
-
0027751663
-
The C.elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
-
Lee,R.C., Feinbaum,R.L. and Ambros,V. (1993) The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell, 75, 843-854.
-
(1993)
Cell
, vol.75
, pp. 843-854
-
-
Lee, R.C.1
Feinbaum, R.L.2
Ambros, V.3
-
176
-
-
0027730383
-
Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C.elegans
-
Wightman,B., Ha,I. and Ruvkun,G. (1993) Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans. Cell, 75, 855-862.
-
(1993)
Cell
, vol.75
, pp. 855-862
-
-
Wightman, B.1
Ha, I.2
Ruvkun, G.3
-
177
-
-
0032545933
-
Potent and specific genetic interference by double stranded RNA in Caenorhabditis elegans
-
Fire,A., Xu,S., Montgomery,M.K., Kostas,S.A., Driver,S.E. and Mello,C.C. (1998) Potent and specific genetic interference by double stranded RNA in Caenorhabditis elegans. Nature, 391, 806-811.
-
(1998)
Nature
, vol.391
, pp. 806-811
-
-
Fire, A.1
Xu, S.2
Montgomery, M.K.3
Kostas, S.A.4
Driver, S.E.5
Mello, C.C.6
|