-
1
-
-
84890559595
-
Long non-coding RNAs: New players in cell differentiation and development
-
Fatica A, Bozzoni I. Long non-coding RNAs: new players in cell differentiation and development. Nat Rev Genet 2014;15:7-21.
-
(2014)
Nat Rev Genet
, vol.15
, pp. 7-21
-
-
Fatica, A.1
Bozzoni, I.2
-
2
-
-
84875418596
-
Noncoding RNA and Polycomb recruitment
-
Brockdorff N. Noncoding RNA and Polycomb recruitment. RNA 2013; 19:429-442.
-
(2013)
RNA
, vol.19
, pp. 429-442
-
-
Brockdorff, N.1
-
3
-
-
84875183056
-
Structure and function of long noncoding RNAs in epigenetic regulation
-
Mercer TR, Mattick JS. Structure and function of long noncoding RNAs in epigenetic regulation. Nat Struct Mol Biol 2013; 20:300-307.
-
(2013)
Nat Struct Mol Biol
, vol.20
, pp. 300-307
-
-
Mercer, T.R.1
Mattick, J.S.2
-
4
-
-
84879987789
-
lincRNAs: Genomics, evolution, and mechanisms
-
Ulitsky I, Bartel DP. lincRNAs: genomics, evolution, and mechanisms. Cell 2013; 154:26-46.
-
(2013)
Cell
, vol.154
, pp. 26-46
-
-
Ulitsky, I.1
Bartel, D.P.2
-
5
-
-
33748419667
-
Myogenic progenitor cells and skeletal myogenesis in vertebrates
-
Buckingham M. Myogenic progenitor cells and skeletal myogenesis in vertebrates. Curr Opin Genet Dev 2006; 16:525-532.
-
(2006)
Curr Opin Genet Dev
, vol.16
, pp. 525-532
-
-
Buckingham, M.1
-
6
-
-
77953491802
-
Epigenetic regulation of skeletal myogenesis
-
Saccone V, Puri PL. Epigenetic regulation of skeletal myogenesis. Organogenesis 2010; 6:48-53.
-
(2010)
Organogenesis
, vol.6
, pp. 48-53
-
-
Saccone, V.1
Puri, P.L.2
-
7
-
-
0035831505
-
The dynamics of myogenin site-specific demethylation is strongly correlated with its expression and with muscle differentiation
-
Lucarelli M, Fuso A, Strom R, Scarpa S. The dynamics of myogenin site-specific demethylation is strongly correlated with its expression and with muscle differentiation. J Biol Chem 2001; 276:7500-7506.
-
(2001)
J Biol Chem
, vol.276
, pp. 7500-7506
-
-
Lucarelli, M.1
Fuso, A.2
Strom, R.3
Scarpa, S.4
-
8
-
-
77955757309
-
Kcnq1ot1 noncoding RNA mediates transcriptional gene silencing by interacting with Dnmt1
-
Mohammad F, Mondal T, Guseva N, Pandey GK, Kanduri C. Kcnq1ot1 noncoding RNA mediates transcriptional gene silencing by interacting with Dnmt1. Development 2010; 137:2493-2499.
-
(2010)
Development
, vol.137
, pp. 2493-2499
-
-
Mohammad, F.1
Mondal, T.2
Guseva, N.3
Pandey, G.K.4
Kanduri, C.5
-
9
-
-
84888057006
-
DNMT1-interacting RNAs block gene-specific DNA methylation
-
Di Ruscio A, Ebralidze AK, Benoukraf T, et al. DNMT1-interacting RNAs block gene-specific DNA methylation. Nature 2013; 503:371-376.
-
(2013)
Nature
, vol.503
, pp. 371-376
-
-
Di Ruscio, A.1
Ebralidze, A.K.2
Benoukraf, T.3
-
10
-
-
84896910701
-
Sebnif: An integrated bioinformatics pipeline for the identification of novel large intergenic noncoding RNAs (lincRNAs) - Application in human skeletal muscle cells
-
Sun K, Zhao Y, Wang H, Sun H. Sebnif: an integrated bioinformatics pipeline for the identification of novel large intergenic noncoding RNAs (lincRNAs) - application in human skeletal muscle cells. PLoS One 2014; 9:e84500.
-
(2014)
PLoS One
, vol.9
, pp. e84500
-
-
Sun, K.1
Zhao, Y.2
Wang, H.3
Sun, H.4
-
11
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
-
Guttman M, Amit I, Garber M, et al. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 2009; 458:223-227.
-
(2009)
Nature
, vol.458
, pp. 223-227
-
-
Guttman, M.1
Amit, I.2
Garber, M.3
-
12
-
-
76949089719
-
Dppa2 knockdown-induced differentiation and repressed proliferation of mouse embryonic stem cells
-
Du J, Chen T, Zou X, Xiong B, Lu G. Dppa2 knockdown-induced differentiation and repressed proliferation of mouse embryonic stem cells. J Biochem 2010; 147:265-271.
-
(2010)
J Biochem
, vol.147
, pp. 265-271
-
-
Du, J.1
Chen, T.2
Zou, X.3
Xiong, B.4
Lu, G.5
-
13
-
-
84885177457
-
Genome-wide survey by ChIPseq reveals YY1 regulation of lincRNAs in skeletal myogenesis
-
Lu L, Sun K, Chen X, et al. Genome-wide survey by ChIPseq reveals YY1 regulation of lincRNAs in skeletal myogenesis. EMBO J 2013; 32:2575-2588.
-
(2013)
EMBO J
, vol.32
, pp. 2575-2588
-
-
Lu, L.1
Sun, K.2
Chen, X.3
-
14
-
-
84877357792
-
iSeeRNA: Identification of long intergenic non-coding RNA transcripts from transcriptome sequencing data
-
Sun K, Chen X, Jiang P, Song X, Wang H, Sun H. iSeeRNA: identification of long intergenic non-coding RNA transcripts from transcriptome sequencing data. BMC Genomics 2013;14 Suppl 2:S7.
-
(2013)
BMC Genomics
, vol.14
, pp. S7
-
-
Sun, K.1
Chen, X.2
Jiang, P.3
Song, X.4
Wang, H.5
Sun, H.6
-
15
-
-
77951935861
-
Genome-wide MyoD binding in skeletal muscle cells: A potential for broad cellular reprogramming
-
Cao Y, Yao Z, Sarkar D, et al. Genome-wide MyoD binding in skeletal muscle cells: a potential for broad cellular reprogramming. Dev Cell 2010; 18:662-674.
-
(2010)
Dev Cell
, vol.18
, pp. 662-674
-
-
Cao, Y.1
Yao, Z.2
Sarkar, D.3
-
16
-
-
84863012238
-
A novel YY1-miR-1 regulatory circuit in skeletal myogenesis revealed by genome-wide prediction of YY1-miRNA network
-
Lu L, Zhou L, Chen EZ, et al. A novel YY1-miR-1 regulatory circuit in skeletal myogenesis revealed by genome-wide prediction of YY1-miRNA network. PLoS One 2012; 7:e27596.
-
(2012)
PLoS One
, vol.7
, pp. e27596
-
-
Lu, L.1
Zhou, L.2
Chen, E.Z.3
-
17
-
-
84862812760
-
Loss of miR-29 in myoblasts contributes to dystrophic muscle pathogenesis
-
Wang L, Zhou L, Jiang P, et al. Loss of miR-29 in myoblasts contributes to dystrophic muscle pathogenesis. Mol Ther 2012; 20:1222-1233.
-
(2012)
Mol Ther
, vol.20
, pp. 1222-1233
-
-
Wang, L.1
Zhou, L.2
Jiang, P.3
-
18
-
-
84864078659
-
A novel target of microRNA-29, Ring1 and YY1-binding protein (Rybp), negatively regulates skeletal myogenesis
-
Zhou L, Wang L, Lu L, Jiang P, Sun H, Wang H. A novel target of microRNA-29, Ring1 and YY1-binding protein (Rybp), negatively regulates skeletal myogenesis. J Biol Chem 2012;287:25255-25265.
-
(2012)
J Biol Chem
, vol.287
, pp. 25255-25265
-
-
Zhou, L.1
Wang, L.2
Lu, L.3
Jiang, P.4
Sun, H.5
Wang, H.6
-
19
-
-
84863389824
-
Inhibition of miR-29 by TGF-beta-Smad3 signaling through dual mechanisms promotes transdifferentiation of mouse myoblasts into myofibroblasts
-
Zhou L, Wang L, Lu L, Jiang P, Sun H, Wang H. Inhibition of miR-29 by TGF-beta-Smad3 signaling through dual mechanisms promotes transdifferentiation of mouse myoblasts into myofibroblasts. PLoS One 2012; 7:e33766.
-
(2012)
PLoS One
, vol.7
, pp. e33766
-
-
Zhou, L.1
Wang, L.2
Lu, L.3
Jiang, P.4
Sun, H.5
Wang, H.6
-
20
-
-
84869052718
-
Cis-acting noncoding RNAs: Friends and foes
-
Guil S, Esteller M. Cis-acting noncoding RNAs: friends and foes. Nat Struct Mol Biol 2012; 19:1068-1075.
-
(2012)
Nat Struct Mol Biol
, vol.19
, pp. 1068-1075
-
-
Guil, S.1
Esteller, M.2
-
21
-
-
67650085250
-
Simultaneous overexpression of Oct4 and Nanog abrogates terminal myogenesis
-
Lang KC, Lin IH, Teng HF, et al. Simultaneous overexpression of Oct4 and Nanog abrogates terminal myogenesis. Am J Physiol Cell Physiol 2009; 297:C43-C54.
-
(2009)
Am J Physiol Cell Physiol
, vol.297
, pp. C43-C54
-
-
Lang, K.C.1
Lin, I.H.2
Teng, H.F.3
-
22
-
-
48349122654
-
Pluripotency associated genes are reactivated by chromatin-modifying agents in neurosphere cells
-
Ruau D, Ensenat-Waser R, Dinger TC, et al. Pluripotency associated genes are reactivated by chromatin-modifying agents in neurosphere cells. Stem Cells 2008; 26:920-926.
-
(2008)
Stem Cells
, vol.26
, pp. 920-926
-
-
Ruau, D.1
Ensenat-Waser, R.2
Dinger, T.C.3
-
23
-
-
80355129718
-
Epigenetics: DNA demethylation promotes skeletal myotube maturation
-
Hupkes M, Jonsson MK, Scheenen WJ, et al. Epigenetics: DNA demethylation promotes skeletal myotube maturation. FASEB J 2011; 25:3861-3872.
-
(2011)
FASEB J
, vol.25
, pp. 3861-3872
-
-
Hupkes, M.1
Jonsson, M.K.2
Scheenen, W.J.3
-
24
-
-
0036683055
-
Co-operation and communication between the human maintenance and de novo DNA (cytosine-5) methyltransferases
-
Kim G, Ni J, Kelesoglu N, Roberts R, Pradhan S. Co-operation and communication between the human maintenance and de novo DNA (cytosine-5) methyltransferases. EMBO J 2002;21:4183-4195.
-
(2002)
EMBO J
, vol.21
, pp. 4183-4195
-
-
Kim, G.1
Ni, J.2
Kelesoglu, N.3
Roberts, R.4
Pradhan, S.5
-
25
-
-
80054756754
-
Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions
-
Chu C, Qu K, Zhong FL, Artandi SE, Chang HY. Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions. Mol Cell 2011; 44:667-678.
-
(2011)
Mol Cell
, vol.44
, pp. 667-678
-
-
Chu, C.1
Qu, K.2
Zhong, F.L.3
Artandi, S.E.4
Chang, H.Y.5
-
26
-
-
84865800494
-
The long-range interaction landscape of gene promoters
-
Sanyal A, Lajoie BR, Jain G, Dekker J. The long-range interaction landscape of gene promoters. Nature 2012; 489:109-113.
-
(2012)
Nature
, vol.489
, pp. 109-113
-
-
Sanyal, A.1
Lajoie, B.R.2
Jain, G.3
Dekker, J.4
-
27
-
-
83255188897
-
Polycomb-repressed genes have permissive enhancers that initiate reprogramming
-
Taberlay PC, Kelly TK, Liu CC, et al. Polycomb-repressed genes have permissive enhancers that initiate reprogramming. Cell 2011; 147:1283-1294.
-
(2011)
Cell
, vol.147
, pp. 1283-1294
-
-
Taberlay, P.C.1
Kelly, T.K.2
Liu, C.C.3
-
28
-
-
84878860751
-
Architectural protein subclasses shape 3D organization of genomes during lineage commitment
-
Phillips-Cremins JE, Sauria ME, Sanyal A, et al. Architectural protein subclasses shape 3D organization of genomes during lineage commitment. Cell 2013; 153:1281-1295.
-
(2013)
Cell
, vol.153
, pp. 1281-1295
-
-
Phillips-Cremins, J.E.1
Sauria, M.E.2
Sanyal, A.3
-
29
-
-
77957139539
-
Mediator and cohesin connect gene expression and chromatin architecture
-
Kagey MH, Newman JJ, Bilodeau S, et al. Mediator and cohesin connect gene expression and chromatin architecture. Nature 2010; 467:430-435.
-
(2010)
Nature
, vol.467
, pp. 430-435
-
-
Kagey, M.H.1
Newman, J.J.2
Bilodeau, S.3
-
30
-
-
84891898005
-
Long noncoding RNA-mediated intrachromosomal interactions promote imprinting at the Kcnq1 locus
-
Zhang H, Zeitz MJ, Wang H, et al. Long noncoding RNA-mediated intrachromosomal interactions promote imprinting at the Kcnq1 locus. J Cell Biol 2014; 204:61-75.
-
(2014)
J Cell Biol
, vol.204
, pp. 61-75
-
-
Zhang, H.1
Zeitz, M.J.2
Wang, H.3
-
31
-
-
84863115641
-
Maintenance of muscle stem-cell quiescence by microRNA-489
-
Cheung TH, Quach NL, Charville GW, et al. Maintenance of muscle stem-cell quiescence by microRNA-489. Nature 2012;482:524-528.
-
(2012)
Nature
, vol.482
, pp. 524-528
-
-
Cheung, T.H.1
Quach, N.L.2
Charville, G.W.3
-
32
-
-
34250218193
-
NF-kappaB regulation of YY1 inhibits skeletal myogenesis through transcriptional silencing of myofibrillar genes
-
Wang H, Hertlein E, Bakkar N, et al. NF-kappaB regulation of YY1 inhibits skeletal myogenesis through transcriptional silencing of myofibrillar genes. Mol Cell Biol 2007; 27:4374-4387.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 4374-4387
-
-
Wang, H.1
Hertlein, E.2
Bakkar, N.3
-
33
-
-
84880922344
-
A novel miR-193a-5p-YY1-APC regulatory axis in human endometrioid endometrial adenocarcinoma
-
Yang Y, Zhou L, Lu L, et al. A novel miR-193a-5p-YY1-APC regulatory axis in human endometrioid endometrial adenocarcinoma. Oncogene 2013; 32:3432-3442.
-
(2013)
Oncogene
, vol.32
, pp. 3432-3442
-
-
Yang, Y.1
Zhou, L.2
Lu, L.3
-
34
-
-
84907499174
-
A novel wnt regulatory axis in endometrioid endometrial cancer
-
Zhao Y, Yang Y, Trovik J, et al. A novel wnt regulatory axis in endometrioid endometrial cancer. Cancer Res 2014; 74:5103-5117.
-
(2014)
Cancer Res
, vol.74
, pp. 5103-5117
-
-
Zhao, Y.1
Yang, Y.2
Trovik, J.3
-
35
-
-
84899939074
-
Human colorectal cancer-specific CCAT1-L lncRNA regulates long-range chromatin interactions at the MYC locus
-
Xiang JF, Yin QF, Chen T, et al. Human colorectal cancer-specific CCAT1-L lncRNA regulates long-range chromatin interactions at the MYC locus. Cell Res 2014; 24:513-531.
-
(2014)
Cell Res
, vol.24
, pp. 513-531
-
-
Xiang, J.F.1
Yin, Q.F.2
Chen, T.3
-
36
-
-
84864078659
-
A novel target of microRNA-29, Ring1 and YY1-binding protein (Rybp), negatively regulates skeletal myogenesis
-
Zhou L, Wang L, Lu L, Jiang P, Sun H, Wang H. A novel target of microRNA-29, Ring1 and YY1-binding protein (Rybp), negatively regulates skeletal myogenesis. J Biol Chem 2012;287:25255-25265.
-
(2012)
J Biol Chem
, vol.287
, pp. 25255-25265
-
-
Zhou, L.1
Wang, L.2
Lu, L.3
Jiang, P.4
Sun, H.5
Wang, H.6
-
37
-
-
84880922344
-
A novel miR-193a-5p-YY1-APC regulatory axis in human endometrioid endometrial adenocarcinoma
-
Yang Y, Zhou L, Lu L, et al. A novel miR-193a-5p-YY1-APC regulatory axis in human endometrioid endometrial adenocarcinoma. Oncogene 2013; 32:3432-3442.
-
(2013)
Oncogene
, vol.32
, pp. 3432-3442
-
-
Yang, Y.1
Zhou, L.2
Lu, L.3
-
38
-
-
77956927823
-
The nuclear-retained non-coding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation
-
Tripathi V, Ellis JD, Shen Z, et al. The nuclear-retained non-coding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation. Mol Cell 2010;39:925-938.
-
(2010)
Mol Cell
, vol.39
, pp. 925-938
-
-
Tripathi, V.1
Ellis, J.D.2
Shen, Z.3
-
39
-
-
77954572735
-
Long noncoding RNA as modular scaffold of histone modification complexes
-
Tsai MC, Manor O, Wan Y, et al. Long noncoding RNA as modular scaffold of histone modification complexes. Science 2010; 329:689-693.
-
(2010)
Science
, vol.329
, pp. 689-693
-
-
Tsai, M.C.1
Manor, O.2
Wan, Y.3
-
40
-
-
34547626629
-
Promoter-associated RNA is required for RNA-directed transcriptional gene silencing in human cells
-
Han J, Kim D, Morris KV. Promoter-associated RNA is required for RNA-directed transcriptional gene silencing in human cells. Proc Natl Acad Sci USA 2007; 104:12422-12427.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 12422-12427
-
-
Han, J.1
Kim, D.2
Morris, K.V.3
-
41
-
-
54549119169
-
NF-kappaB-YY1-miR-29 regulatory circuitry in skeletal myogenesis and rhabdomyo-sarcoma
-
Wang H, Garzon R, Sun H, et al. NF-kappaB-YY1-miR-29 regulatory circuitry in skeletal myogenesis and rhabdomyo-sarcoma. Cancer Cell 2008; 14:369-381.
-
(2008)
Cancer Cell
, vol.14
, pp. 369-381
-
-
Wang, H.1
Garzon, R.2
Sun, H.3
-
42
-
-
0032588186
-
NF-kappaB controls cell growth and differentiation through transcriptional regulation of cyclin D1
-
Guttridge DC, Albanese C, Reuther JY, Pestell RG, Baldwin AS Jr. NF-kappaB controls cell growth and differentiation through transcriptional regulation of cyclin D1. Mol Cell Biol 1999; 19:5785-5799.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 5785-5799
-
-
Guttridge, D.C.1
Albanese, C.2
Reuther, J.Y.3
Pestell, R.G.4
Baldwin, A.S.5
|