-
1
-
-
84897005978
-
Multistate point-prevalence survey of health care-associated infections
-
[1] Magill, S.S., et al. Multistate point-prevalence survey of health care-associated infections. N. Engl. J. Med. 370 (2014), 1198–1208.
-
(2014)
N. Engl. J. Med.
, vol.370
, pp. 1198-1208
-
-
Magill, S.S.1
-
2
-
-
55249105923
-
Clostridium difficile–more difficult than ever
-
[2] Kelly, C.P., LaMont, J.T., Clostridium difficile–more difficult than ever. N. Engl. J. Med. 359 (2008), 1932–1940.
-
(2008)
N. Engl. J. Med.
, vol.359
, pp. 1932-1940
-
-
Kelly, C.P.1
LaMont, J.T.2
-
3
-
-
84930809918
-
Burden of Clostridium difficile infection in the United States
-
[3] Lessa, F.C., Winston, L.G., McDonald, L.C., E. I. P. C. d. S. Team. Burden of Clostridium difficile infection in the United States. N. Engl. J. Med. 372 (2015), 2369–2370.
-
(2015)
N. Engl. J. Med.
, vol.372
, pp. 2369-2370
-
-
Lessa, F.C.1
Winston, L.G.2
McDonald, L.C.3
-
4
-
-
0031958706
-
Clostridium difficile infection
-
[4] Kelly, C.P., LaMont, J.T., Clostridium difficile infection. Annu. Rev. Med. 49 (1998), 375–390.
-
(1998)
Annu. Rev. Med.
, vol.49
, pp. 375-390
-
-
Kelly, C.P.1
LaMont, J.T.2
-
5
-
-
17444366186
-
Clostridium difficile toxins: mechanism of action and role in disease
-
[5] Voth, D.E., Ballard, J.D., Clostridium difficile toxins: mechanism of action and role in disease. Clin. Microbiol. Rev. 18 (2005), 247–263.
-
(2005)
Clin. Microbiol. Rev.
, vol.18
, pp. 247-263
-
-
Voth, D.E.1
Ballard, J.D.2
-
6
-
-
0029054398
-
Glucosylation of Rho proteins by Clostridium difficile toxin B
-
[6] Just, I., et al. Glucosylation of Rho proteins by Clostridium difficile toxin B. Nature 375 (1995), 500–503.
-
(1995)
Nature
, vol.375
, pp. 500-503
-
-
Just, I.1
-
7
-
-
0029011449
-
The enterotoxin from Clostridium difficile (ToxA) monoglucosylates the Rho proteins
-
[7] Just, I., et al. The enterotoxin from Clostridium difficile (ToxA) monoglucosylates the Rho proteins. J. Biol. Chem. 270 (1995), 13932–13936.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 13932-13936
-
-
Just, I.1
-
8
-
-
84868203487
-
Immune responses to Clostridium difficile infection
-
[8] Madan, R., Petri, W.A. Jr., Immune responses to Clostridium difficile infection. Trends Mol. Med. 18 (2012), 658–666.
-
(2012)
Trends Mol. Med.
, vol.18
, pp. 658-666
-
-
Madan, R.1
Petri, W.A.2
-
9
-
-
0034628426
-
Asymptomatic carriage of Clostridium difficile and serum levels of IgG antibody against toxin A
-
[9] Kyne, L., Warny, M., Qamar, A., Kelly, C.P., Asymptomatic carriage of Clostridium difficile and serum levels of IgG antibody against toxin A. N. Engl. J. Med. 342 (2000), 390–397.
-
(2000)
N. Engl. J. Med.
, vol.342
, pp. 390-397
-
-
Kyne, L.1
Warny, M.2
Qamar, A.3
Kelly, C.P.4
-
10
-
-
79960420811
-
The host immune response to Clostridium difficile
-
[10] Kelly, C.P., Kyne, L., The host immune response to Clostridium difficile. J. Med. Microbiol. 60 (2011), 1070–1079.
-
(2011)
J. Med. Microbiol.
, vol.60
, pp. 1070-1079
-
-
Kelly, C.P.1
Kyne, L.2
-
11
-
-
84865966570
-
IgG antibody response to toxins A and B in patients with Clostridium difficile infection
-
[11] Wullt, M., Norén, T., Ljungh, A., Åkerlund, T., IgG antibody response to toxins A and B in patients with Clostridium difficile infection. Clin. Vaccine Immunol. 19 (2012), 1552–1554.
-
(2012)
Clin. Vaccine Immunol.
, vol.19
, pp. 1552-1554
-
-
Wullt, M.1
Norén, T.2
Ljungh, A.3
Åkerlund, T.4
-
12
-
-
74249096590
-
Serum anti-toxin B antibody correlates with protection from recurrent Clostridium difficile infection (CDI)
-
[12] Leav, B.A., et al. Serum anti-toxin B antibody correlates with protection from recurrent Clostridium difficile infection (CDI). Vaccine 28 (2010), 965–969.
-
(2010)
Vaccine
, vol.28
, pp. 965-969
-
-
Leav, B.A.1
-
13
-
-
63849154839
-
Clinical risk factors for severe Clostridium difficile-associated disease
-
[13] Henrich, T.J., Krakower, D., Bitton, A., Yokoe, D.S., Clinical risk factors for severe Clostridium difficile-associated disease. Emerg. Infect. Dis. 15 (2009), 415–422.
-
(2009)
Emerg. Infect. Dis.
, vol.15
, pp. 415-422
-
-
Henrich, T.J.1
Krakower, D.2
Bitton, A.3
Yokoe, D.S.4
-
14
-
-
56849106496
-
The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing
-
[14] Dethlefsen, L., Huse, S., Sogin, M.L., Relman, D.A., The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biol., 6, 2008, e280.
-
(2008)
PLoS Biol.
, vol.6
, pp. e280
-
-
Dethlefsen, L.1
Huse, S.2
Sogin, M.L.3
Relman, D.A.4
-
15
-
-
79952756960
-
Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation
-
[15] Dethlefsen, L., Relman, D.A., Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation. Proc. Natl. Acad. Sci. U. S. A. 108:Suppl. 1 (2011), 4554–4561.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 4554-4561
-
-
Dethlefsen, L.1
Relman, D.A.2
-
16
-
-
79953170241
-
Effect of antibiotic treatment on the intestinal metabolome
-
[16] Antunes, L.C., et al. Effect of antibiotic treatment on the intestinal metabolome. Antimicrob. Agents Chemother. 55 (2011), 1494–1503.
-
(2011)
Antimicrob. Agents Chemother.
, vol.55
, pp. 1494-1503
-
-
Antunes, L.C.1
-
17
-
-
84890317759
-
Microbial targets for the development of functional foods accordingly with nutritional and immune parameters altered in the elderly
-
[17] Salazar, N., et al. Microbial targets for the development of functional foods accordingly with nutritional and immune parameters altered in the elderly. J. Am. Coll. Nutr. 32 (2013), 399–406.
-
(2013)
J. Am. Coll. Nutr.
, vol.32
, pp. 399-406
-
-
Salazar, N.1
-
18
-
-
84870999292
-
Intestinal colonization resistance
-
[18] Lawley, T.D., Walker, A.W., Intestinal colonization resistance. Immunology 138 (2013), 1–11.
-
(2013)
Immunology
, vol.138
, pp. 1-11
-
-
Lawley, T.D.1
Walker, A.W.2
-
19
-
-
84862770598
-
Interaction between the intestinal microbiota and host in Clostridium difficile colonization resistance
-
[19] Britton, R.A., Young, V.B., Interaction between the intestinal microbiota and host in Clostridium difficile colonization resistance. Trends Microbiol. 20 (2012), 313–319.
-
(2012)
Trends Microbiol.
, vol.20
, pp. 313-319
-
-
Britton, R.A.1
Young, V.B.2
-
20
-
-
84927662069
-
Microbiota-mediated inflammation and antimicrobial defense in the intestine
-
[20] Caballero, S., Pamer, E.G., Microbiota-mediated inflammation and antimicrobial defense in the intestine. Annu. Rev. Immunol. 33 (2015), 227–256.
-
(2015)
Annu. Rev. Immunol.
, vol.33
, pp. 227-256
-
-
Caballero, S.1
Pamer, E.G.2
-
21
-
-
79251585301
-
Paneth cell defensins and the regulation of the microbiome: détente at mucosal surfaces
-
[21] Salzman, N.H., Paneth cell defensins and the regulation of the microbiome: détente at mucosal surfaces. Gut Microbes 1 (2010), 401–406.
-
(2010)
Gut Microbes
, vol.1
, pp. 401-406
-
-
Salzman, N.H.1
-
22
-
-
84885573828
-
Microbiota-liberated host sugars facilitate post-antibiotic expansion of enteric pathogens
-
[22] Ng, K.M., et al. Microbiota-liberated host sugars facilitate post-antibiotic expansion of enteric pathogens. Nature 502 (2013), 96–99.
-
(2013)
Nature
, vol.502
, pp. 96-99
-
-
Ng, K.M.1
-
23
-
-
84872517425
-
Nutritional basis for colonization resistance by human commensal Escherichia coli strains HS and Nissle 1917 against E. coli O157:H7 in the mouse intestine
-
[23] Maltby, R., Leatham-Jensen, M.P., Gibson, T., Cohen, P.S., Conway, T., Nutritional basis for colonization resistance by human commensal Escherichia coli strains HS and Nissle 1917 against E. coli O157:H7 in the mouse intestine. PLoS One, 8, 2013, e53957.
-
(2013)
PLoS One
, vol.8
, pp. e53957
-
-
Maltby, R.1
Leatham-Jensen, M.P.2
Gibson, T.3
Cohen, P.S.4
Conway, T.5
-
24
-
-
0023751801
-
Role of competition for nutrients in suppression of Clostridium difficile by the colonic microflora
-
[24] Wilson, K.H., Perini, F., Role of competition for nutrients in suppression of Clostridium difficile by the colonic microflora. Infect. Immun. 56 (1988), 2610–2614.
-
(1988)
Infect. Immun.
, vol.56
, pp. 2610-2614
-
-
Wilson, K.H.1
Perini, F.2
-
25
-
-
0037115014
-
Colonization for the prevention of Clostridium difficile disease in hamsters
-
[25] Sambol, S.P., Merrigan, M.M., Tang, J.K., Johnson, S., Gerding, D.N., Colonization for the prevention of Clostridium difficile disease in hamsters. J. Infect. Dis. 186 (2002), 1781–1789.
-
(2002)
J. Infect. Dis.
, vol.186
, pp. 1781-1789
-
-
Sambol, S.P.1
Merrigan, M.M.2
Tang, J.K.3
Johnson, S.4
Gerding, D.N.5
-
26
-
-
77649282955
-
Metabolism of bile salts in mice influences spore germination in Clostridium difficile
-
[26] Giel, J.L., Sorg, J.A., Sonenshein, A.L., Zhu, J., Metabolism of bile salts in mice influences spore germination in Clostridium difficile. PLoS One, 5, 2010, e8740.
-
(2010)
PLoS One
, vol.5
, pp. e8740
-
-
Giel, J.L.1
Sorg, J.A.2
Sonenshein, A.L.3
Zhu, J.4
-
27
-
-
33244467651
-
Bile salt biotransformations by human intestinal bacteria
-
[27] Ridlon, J.M., Kang, D.J., Hylemon, P.B., Bile salt biotransformations by human intestinal bacteria. J. Lipid Res. 47 (2006), 241–259.
-
(2006)
J. Lipid Res.
, vol.47
, pp. 241-259
-
-
Ridlon, J.M.1
Kang, D.J.2
Hylemon, P.B.3
-
28
-
-
84964280002
-
Antibiotic-induced alterations of the gut microbiota alter secondary bile acid production and allow for Clostridium difficile spore germination and outgrowth in the large intestine
-
e00045-15
-
[28] Theriot, C.M., Bowman, A.A., Young, V.B., Antibiotic-induced alterations of the gut microbiota alter secondary bile acid production and allow for Clostridium difficile spore germination and outgrowth in the large intestine. mSphere, 1, 2016 e00045-15.
-
(2016)
mSphere
, vol.1
-
-
Theriot, C.M.1
Bowman, A.A.2
Young, V.B.3
-
29
-
-
84892894991
-
Antibiotic-induced shifts in the mouse gut microbiome and metabolome increase susceptibility to Clostridium difficile infection
-
[29] Theriot, C.M., et al. Antibiotic-induced shifts in the mouse gut microbiome and metabolome increase susceptibility to Clostridium difficile infection. Nat. Commun., 5, 2014, 3114.
-
(2014)
Nat. Commun.
, vol.5
, pp. 3114
-
-
Theriot, C.M.1
-
30
-
-
84903785994
-
Metabolomics analysis identifies intestinal microbiota-derived biomarkers of colonization resistance in clindamycin-treated mice
-
[30] Jump, R.L., et al. Metabolomics analysis identifies intestinal microbiota-derived biomarkers of colonization resistance in clindamycin-treated mice. PLoS One, 9, 2014, e101267.
-
(2014)
PLoS One
, vol.9
, pp. e101267
-
-
Jump, R.L.1
-
31
-
-
84866158239
-
Protective role of commensals against Clostridium difficile infection via an IL-1β-mediated positive-feedback loop
-
[31] Hasegawa, M., et al. Protective role of commensals against Clostridium difficile infection via an IL-1β-mediated positive-feedback loop. J. Immunol. 189 (2012), 3085–3091.
-
(2012)
J. Immunol.
, vol.189
, pp. 3085-3091
-
-
Hasegawa, M.1
-
32
-
-
53649098280
-
Vancomycin-resistant enterococci exploit antibiotic-induced innate immune deficits
-
[32] Brandl, K., et al. Vancomycin-resistant enterococci exploit antibiotic-induced innate immune deficits. Nature 455 (2008), 804–807.
-
(2008)
Nature
, vol.455
, pp. 804-807
-
-
Brandl, K.1
-
33
-
-
85027947787
-
Induction of colonic regulatory T cells by indigenous Clostridium species
-
[33] Atarashi, K., et al. Induction of colonic regulatory T cells by indigenous Clostridium species. Science 331 (2011), 337–341.
-
(2011)
Science
, vol.331
, pp. 337-341
-
-
Atarashi, K.1
-
34
-
-
0033006564
-
Differential roles of segmented filamentous bacteria and clostridia in development of the intestinal immune system
-
[34] Umesaki, Y., Setoyama, H., Matsumoto, S., Imaoka, A., Itoh, K., Differential roles of segmented filamentous bacteria and clostridia in development of the intestinal immune system. Infect. Immun. 67 (1999), 3504–3511.
-
(1999)
Infect. Immun.
, vol.67
, pp. 3504-3511
-
-
Umesaki, Y.1
Setoyama, H.2
Matsumoto, S.3
Imaoka, A.4
Itoh, K.5
-
35
-
-
84903648103
-
Role of microbiota and innate immunity in recurrent Clostridium difficile infection
-
[35] Bibbò, S., et al. Role of microbiota and innate immunity in recurrent Clostridium difficile infection. J. Immunol. Res., 2014, 2014, 462740.
-
(2014)
J. Immunol. Res.
, vol.2014
, pp. 462740
-
-
Bibbò, S.1
-
36
-
-
84899812464
-
Real-time polymerase chain reaction detection of asymptomatic Clostridium difficile colonization and rising C. difficile-associated disease rates
-
[36] Koo, H.L., et al. Real-time polymerase chain reaction detection of asymptomatic Clostridium difficile colonization and rising C. difficile-associated disease rates. Infect. Control Hosp. Epidemiol. 35 (2014), 667–673.
-
(2014)
Infect. Control Hosp. Epidemiol.
, vol.35
, pp. 667-673
-
-
Koo, H.L.1
-
37
-
-
84885955622
-
Differences in outcome according to Clostridium difficile testing method: a prospective multicentre diagnostic validation study of C difficile infection
-
[37] Planche, T.D., et al. Differences in outcome according to Clostridium difficile testing method: a prospective multicentre diagnostic validation study of C difficile infection. Lancet Infect. Dis. 13 (2013), 936–945.
-
(2013)
Lancet Infect. Dis.
, vol.13
, pp. 936-945
-
-
Planche, T.D.1
-
38
-
-
84933278122
-
Impact of polymerase chain reaction testing on Clostridium difficile infection rates in an acute health care facility
-
[38] Murad, Y.M., et al. Impact of polymerase chain reaction testing on Clostridium difficile infection rates in an acute health care facility. Am. J. Infect. Control 43 (2015), 383–386.
-
(2015)
Am. J. Infect. Control
, vol.43
, pp. 383-386
-
-
Murad, Y.M.1
-
39
-
-
84946124203
-
Diagnosis of Clostridium difficile infection: treat the patient, not the test
-
[39] Dubberke, E.R., Burnham, C.A., Diagnosis of Clostridium difficile infection: treat the patient, not the test. JAMA Intern Med. 175 (2015), 1801–1802.
-
(2015)
JAMA Intern Med.
, vol.175
, pp. 1801-1802
-
-
Dubberke, E.R.1
Burnham, C.A.2
-
40
-
-
84946147732
-
Overdiagnosis of Clostridium difficile infection in the molecular test era
-
[40] Polage, C.R., et al. Overdiagnosis of Clostridium difficile infection in the molecular test era. JAMA Intern Med. 175 (2015), 1792–1801.
-
(2015)
JAMA Intern Med.
, vol.175
, pp. 1792-1801
-
-
Polage, C.R.1
-
41
-
-
84946866565
-
A high rate of alternative diagnoses in patients referred for presumed Clostridium difficile infection
-
41 Jackson, M., Olefson, S., Machan, J.T., Kelly, C.R., A high rate of alternative diagnoses in patients referred for presumed Clostridium difficile infection. J. Clin. Gastroenterol., 2015, 10.1097/MCG.0000000000000447.
-
(2015)
J. Clin. Gastroenterol.
-
-
Jackson, M.1
Olefson, S.2
Machan, J.T.3
Kelly, C.R.4
-
42
-
-
0027441911
-
Evaluation of four commercially available enzyme immunoassays for laboratory diagnosis of Clostridium difficile-associated diseases
-
[42] Whittier, S., et al. Evaluation of four commercially available enzyme immunoassays for laboratory diagnosis of Clostridium difficile-associated diseases. J. Clin. Microbiol. 31 (1993), 2861–2865.
-
(1993)
J. Clin. Microbiol.
, vol.31
, pp. 2861-2865
-
-
Whittier, S.1
-
43
-
-
84929949214
-
Optimizing the laboratory diagnosis of Clostridium difficile infection
-
[43] Gilligan, P.H., Optimizing the laboratory diagnosis of Clostridium difficile infection. Clin. Lab. Med. 35 (2015), 299–312.
-
(2015)
Clin. Lab. Med.
, vol.35
, pp. 299-312
-
-
Gilligan, P.H.1
-
44
-
-
38149108080
-
Rapid and reliable diagnostic algorithm for detection of Clostridium difficile
-
[44] Fenner, L., Widmer, A.F., Goy, G., Rudin, S., Frei, R., Rapid and reliable diagnostic algorithm for detection of Clostridium difficile. J. Clin. Microbiol. 46 (2008), 328–330.
-
(2008)
J. Clin. Microbiol.
, vol.46
, pp. 328-330
-
-
Fenner, L.1
Widmer, A.F.2
Goy, G.3
Rudin, S.4
Frei, R.5
-
45
-
-
0032614375
-
Recurrent Clostridium difficile disease: epidemiology and clinical characteristics
-
[45] McFarland, L.V., et al. Recurrent Clostridium difficile disease: epidemiology and clinical characteristics. Infect. Control Hosp. Epidemiol. 20 (1999), 43–50.
-
(1999)
Infect. Control Hosp. Epidemiol.
, vol.20
, pp. 43-50
-
-
McFarland, L.V.1
-
46
-
-
84868546746
-
Can we identify patients at high risk of recurrent Clostridium difficile infection?
-
[46] Kelly, C.P., Can we identify patients at high risk of recurrent Clostridium difficile infection?. Clin. Microbiol. Infect. 18:Suppl. 6 (2012), 21–27.
-
(2012)
Clin. Microbiol. Infect.
, vol.18
, pp. 21-27
-
-
Kelly, C.P.1
-
47
-
-
56249107224
-
Meta-analysis to assess risk factors for recurrent Clostridium difficile infection
-
[47] Garey, K.W., Sethi, S., Yadav, Y., DuPont, H.L., Meta-analysis to assess risk factors for recurrent Clostridium difficile infection. J. Hosp. Infect. 70 (2008), 298–304.
-
(2008)
J. Hosp. Infect.
, vol.70
, pp. 298-304
-
-
Garey, K.W.1
Sethi, S.2
Yadav, Y.3
DuPont, H.L.4
-
48
-
-
81855199757
-
A randomized, double-blind, placebo-controlled pilot study to assess the ability of rifaximin to prevent recurrent diarrhoea in patients with Clostridium difficile infection
-
[48] Garey, K.W., et al. A randomized, double-blind, placebo-controlled pilot study to assess the ability of rifaximin to prevent recurrent diarrhoea in patients with Clostridium difficile infection. J. Antimicrob. Chemother. 66 (2011), 2850–2855.
-
(2011)
J. Antimicrob. Chemother.
, vol.66
, pp. 2850-2855
-
-
Garey, K.W.1
-
49
-
-
77952564778
-
Economic healthcare costs of Clostridium difficile infection: a systematic review
-
[49] Ghantoji, S.S., Sail, K., Lairson, D.R., DuPont, H.L., Garey, K.W., Economic healthcare costs of Clostridium difficile infection: a systematic review. J. Hosp. Infect. 74 (2010), 309–318.
-
(2010)
J. Hosp. Infect.
, vol.74
, pp. 309-318
-
-
Ghantoji, S.S.1
Sail, K.2
Lairson, D.R.3
DuPont, H.L.4
Garey, K.W.5
-
50
-
-
84863661973
-
Relapse versus reinfection: recurrent Clostridium difficile infection following treatment with fidaxomicin or vancomycin
-
[50] Figueroa, I., et al. Relapse versus reinfection: recurrent Clostridium difficile infection following treatment with fidaxomicin or vancomycin. Clin. Infect. Dis. 55:Suppl. 2 (2012), S104–S109.
-
(2012)
Clin. Infect. Dis.
, vol.55
, pp. S104-S109
-
-
Figueroa, I.1
-
51
-
-
84922146498
-
Clinical efficacy of fidaxomicin compared with vancomycin and metronidazole in Clostridium difficile infections: a meta-analysis and indirect treatment comparison
-
[51] Cornely, O.A., et al. Clinical efficacy of fidaxomicin compared with vancomycin and metronidazole in Clostridium difficile infections: a meta-analysis and indirect treatment comparison. J. Antimicrob. Chemother. 69 (2014), 2892–2900.
-
(2014)
J. Antimicrob. Chemother.
, vol.69
, pp. 2892-2900
-
-
Cornely, O.A.1
-
52
-
-
84859007390
-
Fidaxomicin versus vancomycin for infection with Clostridium difficile in Europe, Canada, and the USA: a double-blind, non-inferiority, randomised controlled trial
-
[52] Cornely, O.A., et al. Fidaxomicin versus vancomycin for infection with Clostridium difficile in Europe, Canada, and the USA: a double-blind, non-inferiority, randomised controlled trial. Lancet Infect. Dis. 12 (2012), 281–289.
-
(2012)
Lancet Infect. Dis.
, vol.12
, pp. 281-289
-
-
Cornely, O.A.1
-
53
-
-
84863676557
-
Treatment of first recurrence of Clostridium difficile infection: fidaxomicin versus vancomycin
-
[53] Cornely, O.A., Miller, M.A., Louie, T.J., Crook, D.W., Gorbach, S.L., Treatment of first recurrence of Clostridium difficile infection: fidaxomicin versus vancomycin. Clin. Infect. Dis. 55:Suppl. 2 (2012), S154–S161.
-
(2012)
Clin. Infect. Dis.
, vol.55
, pp. S154-S161
-
-
Cornely, O.A.1
Miller, M.A.2
Louie, T.J.3
Crook, D.W.4
Gorbach, S.L.5
-
54
-
-
84900418033
-
Fecal microbiota transplant for relapsing Clostridium difficile infection using a frozen inoculum from unrelated donors: a randomized, open-label, controlled pilot study
-
[54] Youngster, I., et al. Fecal microbiota transplant for relapsing Clostridium difficile infection using a frozen inoculum from unrelated donors: a randomized, open-label, controlled pilot study. Clin. Infect. Dis. 58 (2014), 1515–1522.
-
(2014)
Clin. Infect. Dis.
, vol.58
, pp. 1515-1522
-
-
Youngster, I.1
-
55
-
-
84908681868
-
Oral, capsulized, frozen fecal microbiota transplantation for relapsing Clostridium difficile infection
-
[55] Youngster, I., et al. Oral, capsulized, frozen fecal microbiota transplantation for relapsing Clostridium difficile infection. JAMA 312 (2014), 1772–1778.
-
(2014)
JAMA
, vol.312
, pp. 1772-1778
-
-
Youngster, I.1
-
56
-
-
84896708902
-
Microbiota dynamics in patients treated with fecal microbiota transplantation for recurrent Clostridium difficile infection
-
[56] Song, Y., et al. Microbiota dynamics in patients treated with fecal microbiota transplantation for recurrent Clostridium difficile infection. PLoS One, 8, 2013, e81330.
-
(2013)
PLoS One
, vol.8
, pp. e81330
-
-
Song, Y.1
-
57
-
-
84906790071
-
Efficacy of combined jejunal and colonic fecal microbiota transplantation for recurrent Clostridium difficile Infection
-
[57] Dutta, S.K., et al. Efficacy of combined jejunal and colonic fecal microbiota transplantation for recurrent Clostridium difficile Infection. Clin. Gastroenterol. Hepatol. 12 (2014), 1572–1576.
-
(2014)
Clin. Gastroenterol. Hepatol.
, vol.12
, pp. 1572-1576
-
-
Dutta, S.K.1
-
58
-
-
1542513850
-
Antibiotic-associated diarrhea accompanied by large-scale alterations in the composition of the fecal microbiota
-
[58] Young, V.B., Schmidt, T.M., Antibiotic-associated diarrhea accompanied by large-scale alterations in the composition of the fecal microbiota. J. Clin. Microbiol. 42 (2004), 1203–1206.
-
(2004)
J. Clin. Microbiol.
, vol.42
, pp. 1203-1206
-
-
Young, V.B.1
Schmidt, T.M.2
-
59
-
-
84928287872
-
Efficacy of fecal microbiota transplantation in 2 children with recurrent Clostridium difficile infection and its impact on their growth and gut microbiome
-
[59] Walia, R., et al. Efficacy of fecal microbiota transplantation in 2 children with recurrent Clostridium difficile infection and its impact on their growth and gut microbiome. J. Pediatr. Gastroenterol. Nutr. 59 (2014), 565–570.
-
(2014)
J. Pediatr. Gastroenterol. Nutr.
, vol.59
, pp. 565-570
-
-
Walia, R.1
-
60
-
-
84928205403
-
Fecal microbiota transplantation in the treatment of refractory Clostridium difficile infection in children: an update
-
[60] Walia, R., Kunde, S., Mahajan, L., Fecal microbiota transplantation in the treatment of refractory Clostridium difficile infection in children: an update. Curr. Opin. Pediatr. 26 (2014), 573–578.
-
(2014)
Curr. Opin. Pediatr.
, vol.26
, pp. 573-578
-
-
Walia, R.1
Kunde, S.2
Mahajan, L.3
-
61
-
-
84924533173
-
Species and genus level resolution analysis of gut microbiota in Clostridium difficile patients following fecal microbiota transplantation
-
[61] Shankar, V., et al. Species and genus level resolution analysis of gut microbiota in Clostridium difficile patients following fecal microbiota transplantation. Microbiome, 2, 2014, 13.
-
(2014)
Microbiome
, vol.2
, pp. 13
-
-
Shankar, V.1
-
62
-
-
84953837329
-
Identification of key taxa that favor intestinal colonization of Clostridium difficile in an adult Chinese population
-
[62] Gu, S., et al. Identification of key taxa that favor intestinal colonization of Clostridium difficile in an adult Chinese population. Microbes Infect. 18 (2016), 30–38.
-
(2016)
Microbes Infect.
, vol.18
, pp. 30-38
-
-
Gu, S.1
-
63
-
-
84882779621
-
Intestinal dysbiosis and depletion of butyrogenic bacteria in Clostridium difficile infection and nosocomial diarrhea
-
[63] Antharam, V.C., et al. Intestinal dysbiosis and depletion of butyrogenic bacteria in Clostridium difficile infection and nosocomial diarrhea. J. Clin. Microbiol. 51 (2013), 2884–2892.
-
(2013)
J. Clin. Microbiol.
, vol.51
, pp. 2884-2892
-
-
Antharam, V.C.1
-
64
-
-
84904012195
-
Microbiome data distinguish patients with Clostridium difficile infection and non-C. difficile-associated diarrhea from healthy controls
-
e01021–14
-
[64] Schubert, A.M., et al. Microbiome data distinguish patients with Clostridium difficile infection and non-C. difficile-associated diarrhea from healthy controls. MBio, 5, 2014 e01021–14.
-
(2014)
MBio
, vol.5
-
-
Schubert, A.M.1
-
65
-
-
84898829359
-
Reductions in intestinal Clostridiales precede the development of nosocomial Clostridium difficile infection
-
[65] Vincent, C., et al. Reductions in intestinal Clostridiales precede the development of nosocomial Clostridium difficile infection. Microbiome, 1, 2013, 18.
-
(2013)
Microbiome
, vol.1
, pp. 18
-
-
Vincent, C.1
-
66
-
-
84961291897
-
Insight into alteration of gut microbiota in Clostridium difficile infection and asymptomatic C. difficile colonization
-
[66] Zhang, L., et al. Insight into alteration of gut microbiota in Clostridium difficile infection and asymptomatic C. difficile colonization. Anaerobe 34 (2015), 1–7.
-
(2015)
Anaerobe
, vol.34
, pp. 1-7
-
-
Zhang, L.1
-
67
-
-
84925500413
-
Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile
-
[67] Buffie, C.G., et al. Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile. Nature 517 (2015), 205–208.
-
(2015)
Nature
, vol.517
, pp. 205-208
-
-
Buffie, C.G.1
-
68
-
-
84867520688
-
Clostridium difficile carriage in healthy infants in the community: a potential reservoir for pathogenic strains
-
[68] Rousseau, C., et al. Clostridium difficile carriage in healthy infants in the community: a potential reservoir for pathogenic strains. Clin. Infect. Dis. 55 (2012), 1209–1215.
-
(2012)
Clin. Infect. Dis.
, vol.55
, pp. 1209-1215
-
-
Rousseau, C.1
-
69
-
-
33749245678
-
Epidemiologic surveillance of Clostridium difficile diarrhea in a freestanding pediatric hospital and a pediatric hospital at a university medical center
-
[69] Rexach, C.E., Tang-Feldman, Y.J., Cantrell, M.C., Cohen, S.H., Epidemiologic surveillance of Clostridium difficile diarrhea in a freestanding pediatric hospital and a pediatric hospital at a university medical center. Diagn. Microbiol. Infect. Dis. 56 (2006), 109–114.
-
(2006)
Diagn. Microbiol. Infect. Dis.
, vol.56
, pp. 109-114
-
-
Rexach, C.E.1
Tang-Feldman, Y.J.2
Cantrell, M.C.3
Cohen, S.H.4
-
70
-
-
0020413225
-
Epidemiology of Clostridium difficile in infants
-
[70] Larson, H.E., Barclay, F.E., Honour, P., Hill, I.D., Epidemiology of Clostridium difficile in infants. J. Infect. Dis. 146 (1982), 727–733.
-
(1982)
J. Infect. Dis.
, vol.146
, pp. 727-733
-
-
Larson, H.E.1
Barclay, F.E.2
Honour, P.3
Hill, I.D.4
-
71
-
-
0027464842
-
Heterogeneity of Clostridium difficile isolates from infants
-
[71] Collignon, A., et al. Heterogeneity of Clostridium difficile isolates from infants. Eur. J. Pediatr. 152 (1993), 319–322.
-
(1993)
Eur. J. Pediatr.
, vol.152
, pp. 319-322
-
-
Collignon, A.1
-
72
-
-
84862141704
-
Human gut microbiome viewed across age and geography
-
[72] Yatsunenko, T., et al. Human gut microbiome viewed across age and geography. Nature 486 (2012), 222–227.
-
(2012)
Nature
, vol.486
, pp. 222-227
-
-
Yatsunenko, T.1
-
73
-
-
0021357265
-
Incidence and origin of Clostridium difficile in neonates
-
[73] Al-Jumaili, I.J., Shibley, M., Lishman, A.H., Record, C.O., Incidence and origin of Clostridium difficile in neonates. J. Clin. Microbiol. 19 (1984), 77–78.
-
(1984)
J. Clin. Microbiol.
, vol.19
, pp. 77-78
-
-
Al-Jumaili, I.J.1
Shibley, M.2
Lishman, A.H.3
Record, C.O.4
-
74
-
-
79952763661
-
Succession of microbial consortia in the developing infant gut microbiome
-
[74] Koenig, J.E., et al. Succession of microbial consortia in the developing infant gut microbiome. Proc. Natl. Acad. Sci. U. S. A. 108:Suppl. 1 (2011), 4578–4585.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 4578-4585
-
-
Koenig, J.E.1
-
75
-
-
72449145776
-
Influence of early gut microbiota on the maturation of childhood mucosal and systemic immune responses
-
[75] Sjögren, Y.M., et al. Influence of early gut microbiota on the maturation of childhood mucosal and systemic immune responses. Clin. Exp. Allergy 39 (2009), 1842–1851.
-
(2009)
Clin. Exp. Allergy
, vol.39
, pp. 1842-1851
-
-
Sjögren, Y.M.1
-
76
-
-
8644224866
-
Effects of intrapartum penicillin prophylaxis on intestinal bacterial colonization in infants
-
[76] Jauréguy, F., et al. Effects of intrapartum penicillin prophylaxis on intestinal bacterial colonization in infants. J. Clin. Microbiol. 42 (2004), 5184–5188.
-
(2004)
J. Clin. Microbiol.
, vol.42
, pp. 5184-5188
-
-
Jauréguy, F.1
-
77
-
-
46349111355
-
Toxigenic and non-toxigenic Clostridium difficile: determinants of intestinal colonisation and role in childhood atopic manifestations
-
[77] Penders, J., Stobberingh, E.E., van den Brandt, P.A., van Ree, R., Thijs, C., Toxigenic and non-toxigenic Clostridium difficile: determinants of intestinal colonisation and role in childhood atopic manifestations. Gut 57 (2008), 1025–1026.
-
(2008)
Gut
, vol.57
, pp. 1025-1026
-
-
Penders, J.1
Stobberingh, E.E.2
van den Brandt, P.A.3
van Ree, R.4
Thijs, C.5
-
78
-
-
0026669330
-
Diminished Clostridium difficile toxin A sensitivity in newborn rabbit ileum is associated with decreased toxin A receptor
-
[78] Eglow, R., et al. Diminished Clostridium difficile toxin A sensitivity in newborn rabbit ileum is associated with decreased toxin A receptor. J. Clin. Investig. 90 (1992), 822–829.
-
(1992)
J. Clin. Investig.
, vol.90
, pp. 822-829
-
-
Eglow, R.1
-
79
-
-
84936946364
-
Impacts of infection with different toxigenic Clostridium difficile strains on faecal microbiota in children
-
[79] Ling, Z., et al. Impacts of infection with different toxigenic Clostridium difficile strains on faecal microbiota in children. Sci. Rep., 4, 2014, 7485.
-
(2014)
Sci. Rep.
, vol.4
, pp. 7485
-
-
Ling, Z.1
-
80
-
-
39349107697
-
Decreased diversity of the fecal Microbiome in recurrent Clostridium difficile-associated diarrhea
-
[80] Chang, J.Y., et al. Decreased diversity of the fecal Microbiome in recurrent Clostridium difficile-associated diarrhea. J. Infect. Dis. 197 (2008), 435–438.
-
(2008)
J. Infect. Dis.
, vol.197
, pp. 435-438
-
-
Chang, J.Y.1
-
81
-
-
84963891450
-
Recurrent Clostridium difficile infection associates with distinct bile acid and microbiome profiles
-
81 Allegretti, J.R., et al. Recurrent Clostridium difficile infection associates with distinct bile acid and microbiome profiles. Aliment. Pharmacol Ther. 43 (2016), 1142–1153.
-
(2016)
Aliment. Pharmacol Ther.
, vol.43
, pp. 1142-1153
-
-
Allegretti, J.R.1
-
82
-
-
84868361276
-
Toward an understanding of changes in diversity associated with fecal microbiome transplantation based on 16S rRNA gene deep sequencing
-
[82] Shahinas, D., et al. Toward an understanding of changes in diversity associated with fecal microbiome transplantation based on 16S rRNA gene deep sequencing. MBio, 3, 2012.
-
(2012)
MBio
, vol.3
-
-
Shahinas, D.1
-
83
-
-
84894105226
-
Microbiota transplantation restores normal fecal bile acid composition in recurrent Clostridium difficile infection
-
[83] Weingarden, A.R., et al. Microbiota transplantation restores normal fecal bile acid composition in recurrent Clostridium difficile infection. Am. J. Physiol. Gastrointest. Liver Physiol. 306 (2014), G310–G319.
-
(2014)
Am. J. Physiol. Gastrointest. Liver Physiol.
, vol.306
, pp. G310-G319
-
-
Weingarden, A.R.1
-
84
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
[84] Turnbaugh, P.J., et al. A core gut microbiome in obese and lean twins. Nature 457 (2009), 480–484.
-
(2009)
Nature
, vol.457
, pp. 480-484
-
-
Turnbaugh, P.J.1
-
85
-
-
84942195767
-
Clostridium difficile heterogeneously impacts intestinal community architecture but drives stable metabolome responses
-
[85] Rojo, D., et al. Clostridium difficile heterogeneously impacts intestinal community architecture but drives stable metabolome responses. ISME J. 9 (2015), 2206–2220.
-
(2015)
ISME J.
, vol.9
, pp. 2206-2220
-
-
Rojo, D.1
-
86
-
-
77957337708
-
Inhibiting the initiation of Clostridium difficile spore germination using analogs of chenodeoxycholic acid, a bile acid
-
[86] Sorg, J.A., Sonenshein, A.L., Inhibiting the initiation of Clostridium difficile spore germination using analogs of chenodeoxycholic acid, a bile acid. J. Bacteriol. 192 (2010), 4983–4990.
-
(2010)
J. Bacteriol.
, vol.192
, pp. 4983-4990
-
-
Sorg, J.A.1
Sonenshein, A.L.2
-
87
-
-
63449096364
-
Chenodeoxycholate is an inhibitor of Clostridium difficile spore germination
-
[87] Sorg, J.A., Sonenshein, A.L., Chenodeoxycholate is an inhibitor of Clostridium difficile spore germination. J. Bacteriol. 191 (2009), 1115–1117.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 1115-1117
-
-
Sorg, J.A.1
Sonenshein, A.L.2
-
88
-
-
41549142775
-
Bile salts and glycine as cogerminants for Clostridium difficile spores
-
[88] Sorg, J.A., Sonenshein, A.L., Bile salts and glycine as cogerminants for Clostridium difficile spores. J. Bacteriol. 190 (2008), 2505–2512.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 2505-2512
-
-
Sorg, J.A.1
Sonenshein, A.L.2
-
89
-
-
0020084325
-
Use of sodium taurocholate to enhance spore recovery on a medium selective for Clostridium difficile
-
[89] Wilson, K.H., Kennedy, M.J., Fekety, F.R., Use of sodium taurocholate to enhance spore recovery on a medium selective for Clostridium difficile. J. Clin. Microbiol. 15 (1982), 443–446.
-
(1982)
J. Clin. Microbiol.
, vol.15
, pp. 443-446
-
-
Wilson, K.H.1
Kennedy, M.J.2
Fekety, F.R.3
-
90
-
-
0020554353
-
Efficiency of various bile salt preparations for stimulation of Clostridium difficile spore germination
-
[90] Wilson, K.H., Efficiency of various bile salt preparations for stimulation of Clostridium difficile spore germination. J. Clin. Microbiol. 18 (1983), 1017–1019.
-
(1983)
J. Clin. Microbiol.
, vol.18
, pp. 1017-1019
-
-
Wilson, K.H.1
-
91
-
-
84876544830
-
A new strategy for the prevention of Clostridium difficile infection
-
[91] Howerton, A., Patra, M., Abel-Santos, E., A new strategy for the prevention of Clostridium difficile infection. J. Infect. Dis. 207 (2013), 1498–1504.
-
(2013)
J. Infect. Dis.
, vol.207
, pp. 1498-1504
-
-
Howerton, A.1
Patra, M.2
Abel-Santos, E.3
-
92
-
-
56649120585
-
Physical and chemical factors influencing the germination of Clostridium difficile spores
-
[92] Wheeldon, L.J., Worthington, T., Hilton, A.C., Elliott, T.S., Lambert, P.A., Physical and chemical factors influencing the germination of Clostridium difficile spores. J. Appl. Microbiol. 105 (2008), 2223–2230.
-
(2008)
J. Appl. Microbiol.
, vol.105
, pp. 2223-2230
-
-
Wheeldon, L.J.1
Worthington, T.2
Hilton, A.C.3
Elliott, T.S.4
Lambert, P.A.5
-
93
-
-
79954578379
-
Histidine acts as a co-germinant with glycine and taurocholate for Clostridium difficile spores
-
[93] Wheeldon, L.J., Worthington, T., Lambert, P.A., Histidine acts as a co-germinant with glycine and taurocholate for Clostridium difficile spores. J. Appl. Microbiol. 110 (2011), 987–994.
-
(2011)
J. Appl. Microbiol.
, vol.110
, pp. 987-994
-
-
Wheeldon, L.J.1
Worthington, T.2
Lambert, P.A.3
-
94
-
-
62649151803
-
Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites
-
[94] Wikoff, W.R., et al. Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites. Proc. Natl. Acad. Sci. U. S. A. 106 (2009), 3698–3703.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 3698-3703
-
-
Wikoff, W.R.1
-
95
-
-
0016799056
-
Formation of indoleacetic acid by intestinal anaerobes
-
[95] Chung, K.T., Anderson, G.M., Fulk, G.E., Formation of indoleacetic acid by intestinal anaerobes. J. Bacteriol. 124 (1975), 573–575.
-
(1975)
J. Bacteriol.
, vol.124
, pp. 573-575
-
-
Chung, K.T.1
Anderson, G.M.2
Fulk, G.E.3
-
96
-
-
79961227411
-
Variation in antibiotic-induced microbial recolonization impacts on the host metabolic phenotypes of rats
-
[96] Swann, J.R., et al. Variation in antibiotic-induced microbial recolonization impacts on the host metabolic phenotypes of rats. J. Proteom. Res. 10 (2011), 3590–3603.
-
(2011)
J. Proteom. Res.
, vol.10
, pp. 3590-3603
-
-
Swann, J.R.1
-
97
-
-
0029785098
-
Antibiotic-associated diarrhoea, Clostridium difficile, and short-chain fatty acids
-
[97] Hove, H., Tvede, M., Mortensen, P.B., Antibiotic-associated diarrhoea, Clostridium difficile, and short-chain fatty acids. Scand. J. Gastroenterol. 31 (1996), 688–693.
-
(1996)
Scand. J. Gastroenterol.
, vol.31
, pp. 688-693
-
-
Hove, H.1
Tvede, M.2
Mortensen, P.B.3
-
98
-
-
0022531628
-
Influence of oral intake of seven different antibiotics on faecal short-chain fatty acid excretion in healthy subjects
-
[98] Høverstad, T., et al. Influence of oral intake of seven different antibiotics on faecal short-chain fatty acid excretion in healthy subjects. Scand. J. Gastroenterol. 21 (1986), 997–1003.
-
(1986)
Scand. J. Gastroenterol.
, vol.21
, pp. 997-1003
-
-
Høverstad, T.1
-
99
-
-
0022977676
-
Short-chain fatty acids in germfree mice and rats
-
[99] Høverstad, T., Midtvedt, T., Short-chain fatty acids in germfree mice and rats. J. Nutr. 116 (1986), 1772–1776.
-
(1986)
J. Nutr.
, vol.116
, pp. 1772-1776
-
-
Høverstad, T.1
Midtvedt, T.2
-
100
-
-
72249105772
-
NMR-based metabonomics analysis of mouse urine and fecal extracts following oral treatment with the broad-spectrum antibiotic enrofloxacin (Baytril)
-
[100] Romick-Rosendale, L.E., et al. NMR-based metabonomics analysis of mouse urine and fecal extracts following oral treatment with the broad-spectrum antibiotic enrofloxacin (Baytril). Magn. Reson Chem. 47:Suppl. 1 (2009), S36–S46.
-
(2009)
Magn. Reson Chem.
, vol.47
, pp. S36-S46
-
-
Romick-Rosendale, L.E.1
-
101
-
-
0028080726
-
Effect of fiber source on short-chain fatty acid production and on the growth and toxin production by Clostridium difficile
-
[101] May, T., Mackie, R.I., Fahey, G.C., Cremin, J.C., Garleb, K.A., Effect of fiber source on short-chain fatty acid production and on the growth and toxin production by Clostridium difficile. Scand. J. Gastroenterol. 29 (1994), 916–922.
-
(1994)
Scand. J. Gastroenterol.
, vol.29
, pp. 916-922
-
-
May, T.1
Mackie, R.I.2
Fahey, G.C.3
Cremin, J.C.4
Garleb, K.A.5
-
102
-
-
0021141415
-
Role of volatile fatty acids in colonization resistance to Clostridium difficile
-
[102] Rolfe, R.D., Role of volatile fatty acids in colonization resistance to Clostridium difficile. Infect. Immun. 45 (1984), 185–191.
-
(1984)
Infect. Immun.
, vol.45
, pp. 185-191
-
-
Rolfe, R.D.1
-
103
-
-
0026078596
-
Short-chain organic acids at ph 5.0 kill Escherichia coli and Salmonella spp. without causing membrane perturbation
-
[103] Cherrington, C.A., Hinton, M., Pearson, G.R., Chopra, I., Short-chain organic acids at ph 5.0 kill Escherichia coli and Salmonella spp. without causing membrane perturbation. J. Appl. Bacteriol. 70 (1991), 161–165.
-
(1991)
J. Appl. Bacteriol.
, vol.70
, pp. 161-165
-
-
Cherrington, C.A.1
Hinton, M.2
Pearson, G.R.3
Chopra, I.4
-
104
-
-
68249110221
-
The role of pH in determining the species composition of the human colonic microbiota
-
[104] Duncan, S.H., Louis, P., Thomson, J.M., Flint, H.J., The role of pH in determining the species composition of the human colonic microbiota. Environ. Microbiol. 11 (2009), 2112–2122.
-
(2009)
Environ. Microbiol.
, vol.11
, pp. 2112-2122
-
-
Duncan, S.H.1
Louis, P.2
Thomson, J.M.3
Flint, H.J.4
-
105
-
-
84957717801
-
Does alkaline colonic pH predispose to Clostridium difficile infection?
-
[105] Gupta, P., et al. Does alkaline colonic pH predispose to Clostridium difficile infection?. South Med. J. 109 (2016), 91–96.
-
(2016)
South Med. J.
, vol.109
, pp. 91-96
-
-
Gupta, P.1
-
106
-
-
0031840660
-
Review article: short chain fatty acids in health and disease
-
[106] Cook, S.I., Sellin, J.H., Review article: short chain fatty acids in health and disease. Aliment. Pharmacol. Ther. 12 (1998), 499–507.
-
(1998)
Aliment. Pharmacol. Ther.
, vol.12
, pp. 499-507
-
-
Cook, S.I.1
Sellin, J.H.2
-
107
-
-
33748209543
-
Colonic health: fermentation and short chain fatty acids
-
[107] Wong, J.M., de Souza, R., Kendall, C.W., Emam, A., Jenkins, D.J., Colonic health: fermentation and short chain fatty acids. J. Clin. Gastroenterol. 40 (2006), 235–243.
-
(2006)
J. Clin. Gastroenterol.
, vol.40
, pp. 235-243
-
-
Wong, J.M.1
de Souza, R.2
Kendall, C.W.3
Emam, A.4
Jenkins, D.J.5
-
108
-
-
0022493972
-
An in-vitro model of colonisation resistance to Clostridium difficile infection
-
[108] Borriello, S.P., Barclay, F.E., An in-vitro model of colonisation resistance to Clostridium difficile infection. J. Med. Microbiol. 21 (1986), 299–309.
-
(1986)
J. Med. Microbiol.
, vol.21
, pp. 299-309
-
-
Borriello, S.P.1
Barclay, F.E.2
-
109
-
-
84868158515
-
Targeted restoration of the intestinal microbiota with a simple, defined bacteriotherapy resolves relapsing Clostridium difficile disease in mice
-
[109] Lawley, T.D., et al. Targeted restoration of the intestinal microbiota with a simple, defined bacteriotherapy resolves relapsing Clostridium difficile disease in mice. PLoS Pathog., 8, 2012, e1002995.
-
(2012)
PLoS Pathog.
, vol.8
, pp. e1002995
-
-
Lawley, T.D.1
-
110
-
-
84901251583
-
Phylogenetic distribution of three pathways for propionate production within the human gut microbiota
-
[110] Reichardt, N., et al. Phylogenetic distribution of three pathways for propionate production within the human gut microbiota. ISME J. 8 (2014), 1323–1335.
-
(2014)
ISME J.
, vol.8
, pp. 1323-1335
-
-
Reichardt, N.1
-
111
-
-
84920621547
-
Gut microbiota-produced succinate promotes C. difficile infection after antibiotic treatment or motility disturbance
-
[111] Ferreyra, J.A., et al. Gut microbiota-produced succinate promotes C. difficile infection after antibiotic treatment or motility disturbance. Cell Host Microbe 16 (2014), 770–777.
-
(2014)
Cell Host Microbe
, vol.16
, pp. 770-777
-
-
Ferreyra, J.A.1
-
112
-
-
79959687178
-
Epidemiology and risk factors for Clostridium difficile infection in children
-
[112] Sandora, T.J., et al. Epidemiology and risk factors for Clostridium difficile infection in children. Pediatr. Infect. Dis. J. 30 (2011), 580–584.
-
(2011)
Pediatr. Infect. Dis. J.
, vol.30
, pp. 580-584
-
-
Sandora, T.J.1
-
113
-
-
84878639062
-
Clostridium difficile Infection in children
-
[113] Sammons, J.S., Toltzis, P., Zaoutis, T.E., Clostridium difficile Infection in children. JAMA Pediatr. 167 (2013), 567–573.
-
(2013)
JAMA Pediatr.
, vol.167
, pp. 567-573
-
-
Sammons, J.S.1
Toltzis, P.2
Zaoutis, T.E.3
-
114
-
-
84949126929
-
Diagnosis and management of Clostridium difficile infection by pediatric infectious diseases physicians
-
[114] Sammons, J.S., et al. Diagnosis and management of Clostridium difficile infection by pediatric infectious diseases physicians. J. Pediatr. Infect. Dis. Soc. 3 (2014), 43–48.
-
(2014)
J. Pediatr. Infect. Dis. Soc.
, vol.3
, pp. 43-48
-
-
Sammons, J.S.1
-
115
-
-
84924250556
-
Similar proportions of stool specimens from hospitalized children with and without diarrhea test positive for Clostridium difficile
-
[115] Leibowitz, J., Soma, V.L., Rosen, L., Ginocchio, C.C., Rubin, L.G., Similar proportions of stool specimens from hospitalized children with and without diarrhea test positive for Clostridium difficile. Pediatr. Infect. Dis. J. 34 (2015), 261–266.
-
(2015)
Pediatr. Infect. Dis. J.
, vol.34
, pp. 261-266
-
-
Leibowitz, J.1
Soma, V.L.2
Rosen, L.3
Ginocchio, C.C.4
Rubin, L.G.5
-
116
-
-
33846288887
-
Comparison of DNA extraction methods for analysis of turkey cecal microbiota
-
[116] Scupham, A.J., Jones, J.A., Wesley, I.V., Comparison of DNA extraction methods for analysis of turkey cecal microbiota. J. Appl. Microbiol. 102 (2007), 401–409.
-
(2007)
J. Appl. Microbiol.
, vol.102
, pp. 401-409
-
-
Scupham, A.J.1
Jones, J.A.2
Wesley, I.V.3
-
117
-
-
77951977802
-
Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: effective recovery of bacterial and archaeal DNA using mechanical cell lysis
-
[117] Salonen, A., et al. Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: effective recovery of bacterial and archaeal DNA using mechanical cell lysis. J. Microbiol. Methods 81 (2010), 127–134.
-
(2010)
J. Microbiol. Methods
, vol.81
, pp. 127-134
-
-
Salonen, A.1
-
118
-
-
77957723630
-
Effects of polymerase, template dilution and cycle number on PCR based 16 S rRNA diversity analysis using the deep sequencing method
-
[118] Wu, J.Y., et al. Effects of polymerase, template dilution and cycle number on PCR based 16 S rRNA diversity analysis using the deep sequencing method. BMC Microbiol., 10, 2010, 255.
-
(2010)
BMC Microbiol.
, vol.10
, pp. 255
-
-
Wu, J.Y.1
-
119
-
-
84865060813
-
PCR biases distort bacterial and archaeal community structure in pyrosequencing datasets
-
[119] Pinto, A.J., Raskin, L., PCR biases distort bacterial and archaeal community structure in pyrosequencing datasets. PLoS One, 7, 2012, e43093.
-
(2012)
PLoS One
, vol.7
, pp. e43093
-
-
Pinto, A.J.1
Raskin, L.2
-
120
-
-
84940984953
-
Primer and platform effects on 16S rRNA tag sequencing
-
[120] Tremblay, J., et al. Primer and platform effects on 16S rRNA tag sequencing. Front. Microbiol., 6, 2015, 771.
-
(2015)
Front. Microbiol.
, vol.6
, pp. 771
-
-
Tremblay, J.1
-
121
-
-
78650214082
-
Evaluation of different partial 16S rRNA gene sequence regions for phylogenetic analysis of microbiomes
-
[121] Kim, M., Morrison, M., Yu, Z., Evaluation of different partial 16S rRNA gene sequence regions for phylogenetic analysis of microbiomes. J. Microbiol. Methods 84 (2011), 81–87.
-
(2011)
J. Microbiol. Methods
, vol.84
, pp. 81-87
-
-
Kim, M.1
Morrison, M.2
Yu, Z.3
-
122
-
-
84874536596
-
The variability of the 16S rRNA gene in bacterial genomes and its consequences for bacterial community analyses
-
[122] Větrovský, T., Baldrian, P., The variability of the 16S rRNA gene in bacterial genomes and its consequences for bacterial community analyses. PLoS One, 8, 2013, e57923.
-
(2013)
PLoS One
, vol.8
, pp. e57923
-
-
Větrovský, T.1
Baldrian, P.2
-
123
-
-
84899531657
-
Analysis, optimization and verification of Illumina-generated 16S rRNA gene amplicon surveys
-
[123] Nelson, M.C., Morrison, H.G., Benjamino, J., Grim, S.L., Graf, J., Analysis, optimization and verification of Illumina-generated 16S rRNA gene amplicon surveys. PLoS One, 9, 2014, e94249.
-
(2014)
PLoS One
, vol.9
, pp. e94249
-
-
Nelson, M.C.1
Morrison, H.G.2
Benjamino, J.3
Grim, S.L.4
Graf, J.5
-
124
-
-
84951059585
-
De novo clustering methods outperform reference-based methods for assigning 16S rRNA gene sequences to operational taxonomic units
-
[124] Westcott, S., Schloss, P., De novo clustering methods outperform reference-based methods for assigning 16S rRNA gene sequences to operational taxonomic units. PeerJ, 3, 2015.
-
(2015)
PeerJ
, vol.3
-
-
Westcott, S.1
Schloss, P.2
-
125
-
-
84948992933
-
Gut microbiota and aging
-
[125] O'Toole, P.W., Jeffery, I.B., Gut microbiota and aging. Science 350 (2015), 1214–1215.
-
(2015)
Science
, vol.350
, pp. 1214-1215
-
-
O'Toole, P.W.1
Jeffery, I.B.2
-
126
-
-
77955602581
-
Through ageing, and beyond: gut microbiota and inflammatory status in seniors and centenarians
-
[126] Biagi, E., et al. Through ageing, and beyond: gut microbiota and inflammatory status in seniors and centenarians. PLoS One, 5, 2010, e10667.
-
(2010)
PLoS One
, vol.5
, pp. e10667
-
-
Biagi, E.1
-
127
-
-
26844452803
-
Fecal microbiota composition and frailty
-
[127] van Tongeren, S.P., Slaets, J.P., Harmsen, H.J., Welling, G.W., Fecal microbiota composition and frailty. Appl. Environ. Microbiol. 71 (2005), 6438–6442.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 6438-6442
-
-
van Tongeren, S.P.1
Slaets, J.P.2
Harmsen, H.J.3
Welling, G.W.4
-
128
-
-
66049127999
-
Combined PCR-DGGE fingerprinting and quantitative-PCR indicates shifts in fecal population sizes and diversity of Bacteroides, bifidobacteria and Clostridium cluster IV in institutionalized elderly
-
[128] Zwielehner, J., et al. Combined PCR-DGGE fingerprinting and quantitative-PCR indicates shifts in fecal population sizes and diversity of Bacteroides, bifidobacteria and Clostridium cluster IV in institutionalized elderly. Exp. Gerontol. 44 (2009), 440–446.
-
(2009)
Exp. Gerontol.
, vol.44
, pp. 440-446
-
-
Zwielehner, J.1
-
129
-
-
78650973052
-
High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease
-
[129] Walker, A.W., et al. High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease. BMC Microbiol., 11, 2011, 7.
-
(2011)
BMC Microbiol.
, vol.11
, pp. 7
-
-
Walker, A.W.1
-
130
-
-
35348857386
-
Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
-
[130] Frank, D.N., et al. Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Proc. Natl. Acad. Sci. U. S. A. 104 (2007), 13780–13785.
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 13780-13785
-
-
Frank, D.N.1
-
131
-
-
79959961092
-
Twin study indicates loss of interaction between microbiota and mucosa of patients with ulcerative colitis
-
[131] Lepage, P., et al. Twin study indicates loss of interaction between microbiota and mucosa of patients with ulcerative colitis. Gastroenterology 141 (2011), 227–236.
-
(2011)
Gastroenterology
, vol.141
, pp. 227-236
-
-
Lepage, P.1
-
132
-
-
34548483459
-
Culture independent analysis of ileal mucosa reveals a selective increase in invasive Escherichia coli of novel phylogeny relative to depletion of Clostridiales in Crohn's disease involving the ileum
-
[132] Baumgart, M., et al. Culture independent analysis of ileal mucosa reveals a selective increase in invasive Escherichia coli of novel phylogeny relative to depletion of Clostridiales in Crohn's disease involving the ileum. ISME J. 1 (2007), 403–418.
-
(2007)
ISME J.
, vol.1
, pp. 403-418
-
-
Baumgart, M.1
-
133
-
-
4143069158
-
High prevalence of adherent-invasive Escherichia coli associated with ileal mucosa in Crohn's disease
-
[133] Darfeuille-Michaud, A., et al. High prevalence of adherent-invasive Escherichia coli associated with ileal mucosa in Crohn's disease. Gastroenterology 127 (2004), 412–421.
-
(2004)
Gastroenterology
, vol.127
, pp. 412-421
-
-
Darfeuille-Michaud, A.1
-
134
-
-
67649509224
-
Molecular diversity of Escherichia coli in the human gut: new ecological evidence supporting the role of adherent-invasive E. coli (AIEC) in Crohn's disease
-
[134] Martinez-Medina, M., et al. Molecular diversity of Escherichia coli in the human gut: new ecological evidence supporting the role of adherent-invasive E. coli (AIEC) in Crohn's disease. Inflamm. Bowel Dis. 15 (2009), 872–882.
-
(2009)
Inflamm. Bowel Dis.
, vol.15
, pp. 872-882
-
-
Martinez-Medina, M.1
-
135
-
-
3242737791
-
Enhanced Escherichia coli adherence and invasion in Crohn's disease and colon cancer
-
[135] Martin, H.M., et al. Enhanced Escherichia coli adherence and invasion in Crohn's disease and colon cancer. Gastroenterology 127 (2004), 80–93.
-
(2004)
Gastroenterology
, vol.127
, pp. 80-93
-
-
Martin, H.M.1
-
136
-
-
34247500287
-
High prevalence of Escherichia coli belonging to the B2+D phylogenetic group in inflammatory bowel disease
-
[136] Kotlowski, R., Bernstein, C.N., Sepehri, S., Krause, D.O., High prevalence of Escherichia coli belonging to the B2+D phylogenetic group in inflammatory bowel disease. Gut 56 (2007), 669–675.
-
(2007)
Gut
, vol.56
, pp. 669-675
-
-
Kotlowski, R.1
Bernstein, C.N.2
Sepehri, S.3
Krause, D.O.4
-
137
-
-
34548770119
-
Invasive Escherichia coli are a feature of Crohn's disease
-
[137] Sasaki, M., et al. Invasive Escherichia coli are a feature of Crohn's disease. Lab. Investig. 87 (2007), 1042–1054.
-
(2007)
Lab. Investig.
, vol.87
, pp. 1042-1054
-
-
Sasaki, M.1
-
138
-
-
0036378418
-
Fusobacterium varium localized in the colonic mucosa of patients with ulcerative colitis stimulates species-specific antibody
-
[138] Ohkusa, T., et al. Fusobacterium varium localized in the colonic mucosa of patients with ulcerative colitis stimulates species-specific antibody. J. Gastroenterol. Hepatol. 17 (2002), 849–853.
-
(2002)
J. Gastroenterol. Hepatol.
, vol.17
, pp. 849-853
-
-
Ohkusa, T.1
-
139
-
-
34547714253
-
Terminal restriction fragment length polymorphism analysis of the diversity of fecal microbiota in patients with ulcerative colitis
-
[139] Andoh, A., et al. Terminal restriction fragment length polymorphism analysis of the diversity of fecal microbiota in patients with ulcerative colitis. Inflamm. Bowel Dis. 13 (2007), 955–962.
-
(2007)
Inflamm. Bowel Dis.
, vol.13
, pp. 955-962
-
-
Andoh, A.1
-
140
-
-
84876375062
-
Phylogenetic analysis of dysbiosis in ulcerative colitis during remission
-
[140] Rajilić-Stojanović, M., Shanahan, F., Guarner, F., de Vos, W.M., Phylogenetic analysis of dysbiosis in ulcerative colitis during remission. Inflamm. Bowel Dis. 19 (2013), 481–488.
-
(2013)
Inflamm. Bowel Dis.
, vol.19
, pp. 481-488
-
-
Rajilić-Stojanović, M.1
Shanahan, F.2
Guarner, F.3
de Vos, W.M.4
-
141
-
-
84954286470
-
Proton pump inhibitors alter the composition of the gut microbiota
-
[141] Jackson, M.A., et al. Proton pump inhibitors alter the composition of the gut microbiota. Gut 65 (2016), 749–756.
-
(2016)
Gut
, vol.65
, pp. 749-756
-
-
Jackson, M.A.1
-
142
-
-
84954286591
-
Proton pump inhibitors affect the gut microbiome
-
[142] Imhann, F., et al. Proton pump inhibitors affect the gut microbiome. Gut 65 (2016), 740–748.
-
(2016)
Gut
, vol.65
, pp. 740-748
-
-
Imhann, F.1
-
143
-
-
84942342601
-
Proton pump inhibitors alter specific taxa in the human gastrointestinal microbiome: a crossover trial
-
e889
-
[143] Freedberg, D.E., et al. Proton pump inhibitors alter specific taxa in the human gastrointestinal microbiome: a crossover trial. Gastroenterology 149 (2015), 883–885 e889.
-
(2015)
Gastroenterology
, vol.149
, pp. 883-885
-
-
Freedberg, D.E.1
-
144
-
-
84909993511
-
16S rRNA gene pyrosequencing reveals shift in patient faecal microbiota during high-dose chemotherapy as conditioning regimen for bone marrow transplantation
-
[144] Montassier, E., et al. 16S rRNA gene pyrosequencing reveals shift in patient faecal microbiota during high-dose chemotherapy as conditioning regimen for bone marrow transplantation. Microb. Ecol. 67 (2014), 690–699.
-
(2014)
Microb. Ecol.
, vol.67
, pp. 690-699
-
-
Montassier, E.1
-
145
-
-
84938555496
-
Chemotherapy-driven dysbiosis in the intestinal microbiome
-
[145] Montassier, E., et al. Chemotherapy-driven dysbiosis in the intestinal microbiome. Aliment. Pharmacol. Ther. 42 (2015), 515–528.
-
(2015)
Aliment. Pharmacol. Ther.
, vol.42
, pp. 515-528
-
-
Montassier, E.1
|