메뉴 건너뛰기




Volumn 13, Issue 8, 2007, Pages 955-962

Terminal restriction fragment length polymorphism analysis of the diversity of fecal microbiota in patients with ulcerative colitis

Author keywords

Commensals; IBD; Intestinal microbiota; Pouchitis

Indexed keywords

ADULT; ARTICLE; BACTERIAL COLONIZATION; BACTERIAL STRAIN; CLINICAL ARTICLE; CONTROLLED STUDY; DNA DETERMINATION; DNA EXTRACTION; FECES; FEMALE; HUMAN; HUMAN CELL; MALE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROCTITIS; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; ULCERATIVE COLITIS;

EID: 34547714253     PISSN: 10780998     EISSN: 15364844     Source Type: Journal    
DOI: 10.1002/ibd.20151     Document Type: Article
Times cited : (96)

References (38)
  • 1
    • 0037043658 scopus 로고    scopus 로고
    • Inflammatory bowel disease
    • Podolsky DK. Inflammatory bowel disease. N Engl J Med. 2002;347: 417-429.
    • (2002) N Engl J Med , vol.347 , pp. 417-429
    • Podolsky, D.K.1
  • 2
    • 2442453484 scopus 로고    scopus 로고
    • Therapeutic manipulation of the enteric microflora in inflammatory bowel diseases: Antibiotics, probiotics, and prebiotics
    • Sartor RB. Therapeutic manipulation of the enteric microflora in inflammatory bowel diseases: antibiotics, probiotics, and prebiotics. Gastroenterology. 2004;126:1620-1633.
    • (2004) Gastroenterology , vol.126 , pp. 1620-1633
    • Sartor, R.B.1
  • 3
    • 0345830652 scopus 로고    scopus 로고
    • Tamboli CP, Neut C, Desreumaux P, Colombel JF. Dysbiosis in inflammatory bowel disease. Gut. 2004;53:1-4.
    • Tamboli CP, Neut C, Desreumaux P, Colombel JF. Dysbiosis in inflammatory bowel disease. Gut. 2004;53:1-4.
  • 4
    • 6344287661 scopus 로고    scopus 로고
    • Host-bacterial interactions in inflammatory bowel disease
    • Mahida YR, Rolfe VE. Host-bacterial interactions in inflammatory bowel disease. Clin Sci (Lond). 2004;107:331-341.
    • (2004) Clin Sci (Lond) , vol.107 , pp. 331-341
    • Mahida, Y.R.1    Rolfe, V.E.2
  • 5
    • 0032412057 scopus 로고    scopus 로고
    • Resident enteric bacteria are necessary for development of spontaneous colitis and immune system activation in interleukin-10-deficient mice
    • Sellon RK, Tonkonogy S, Schultz M, et al. Resident enteric bacteria are necessary for development of spontaneous colitis and immune system activation in interleukin-10-deficient mice. Infect Immun. 1998,66:5224-5231.
    • (1998) Infect Immun , vol.66 , pp. 5224-5231
    • Sellon, R.K.1    Tonkonogy, S.2    Schultz, M.3
  • 6
    • 0034669919 scopus 로고    scopus 로고
    • Alteration of V beta usage and cytokine production of CD4+ TCR beta beta homodimer T cells by elimination of Bacteroides vulgatus prevents colitis in TCR alpha-chain-deficient mice
    • Kishi D, Takahashi I, Kai Y, et al. Alteration of V beta usage and cytokine production of CD4+ TCR beta beta homodimer T cells by elimination of Bacteroides vulgatus prevents colitis in TCR alpha-chain-deficient mice. J Immunol. 2000;165:5891-5899.
    • (2000) J Immunol , vol.165 , pp. 5891-5899
    • Kishi, D.1    Takahashi, I.2    Kai, Y.3
  • 7
    • 0028003794 scopus 로고
    • The germfree state prevents development of gut and joint inflammatory disease in HLA-B27 transgenic rats
    • Taurog JD, Richardson JA, Croft JT, et al. The germfree state prevents development of gut and joint inflammatory disease in HLA-B27 transgenic rats. J Exp Med. 1994;180:2359-2364.
    • (1994) J Exp Med , vol.180 , pp. 2359-2364
    • Taurog, J.D.1    Richardson, J.A.2    Croft, J.T.3
  • 9
    • 0036024611 scopus 로고    scopus 로고
    • Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture-based methods
    • Hayashi H, Sakamoto M, Benno Y. Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture-based methods. Microbiol Immunol. 2002;46:535-548.
    • (2002) Microbiol Immunol , vol.46 , pp. 535-548
    • Hayashi, H.1    Sakamoto, M.2    Benno, Y.3
  • 10
    • 0029162158 scopus 로고
    • Quantitative fluorescence in situ hybridization of Bifidobacterium spp. with genus-specific 16S rRNA-targeted probes and its application in fecal samples
    • Langendijk PS, Schut F, Jansen GJ, et al. Quantitative fluorescence in situ hybridization of Bifidobacterium spp. with genus-specific 16S rRNA-targeted probes and its application in fecal samples. Appl Environ Microbiol. 1995;61:3069-75.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 3069-3075
    • Langendijk, P.S.1    Schut, F.2    Jansen, G.J.3
  • 11
    • 0031692488 scopus 로고    scopus 로고
    • Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes
    • Franks AH, Harmsen HJ, Raangs GC, Jansen GJ, Schut F, Welling GW. Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes. Appl Environ Microbiol. 1998;64:3336-3345.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3336-3345
    • Franks, A.H.1    Harmsen, H.J.2    Raangs, G.C.3    Jansen, G.J.4    Schut, F.5    Welling, G.W.6
  • 12
    • 0030800930 scopus 로고    scopus 로고
    • PCR detection of Ruminococcus spp. in human and animal faecal samples
    • Wang RF, Cao WW, Cerniglia CE. PCR detection of Ruminococcus spp. in human and animal faecal samples. Mol Cell Probes. 1997;11: 259-265.
    • (1997) Mol Cell Probes , vol.11 , pp. 259-265
    • Wang, R.F.1    Cao, W.W.2    Cerniglia, C.E.3
  • 13
    • 33845454742 scopus 로고    scopus 로고
    • Gut-associated bacterial microbiota in paediatric patients with inflammatory bowel disease
    • Conte MP, Schippa S, Zamboni I, et al. Gut-associated bacterial microbiota in paediatric patients with inflammatory bowel disease. Gut. 2006; 55:1760-1767.
    • (2006) Gut , vol.55 , pp. 1760-1767
    • Conte, M.P.1    Schippa, S.2    Zamboni, I.3
  • 14
    • 0031684010 scopus 로고    scopus 로고
    • Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria
    • Zoetendal EG, Akkermans AD, De Vos WM. Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria. Appl Environ Microbiol. 1998;64:3854-3859.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3854-3859
    • Zoetendal, E.G.1    Akkermans, A.D.2    De Vos, W.M.3
  • 15
    • 0036300743 scopus 로고    scopus 로고
    • Mucosa-associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces
    • Zoetendal EG, von Wright A, Vilpponen-Salmela T, Ben-Amor K, Akkermans AD, de Vos WM. Mucosa-associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces. Appl Environ Microbiol. 2002;68:3401-3407.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3401-3407
    • Zoetendal, E.G.1    von Wright, A.2    Vilpponen-Salmela, T.3    Ben-Amor, K.4    Akkermans, A.D.5    de Vos, W.M.6
  • 16
    • 0042471955 scopus 로고    scopus 로고
    • Molecular analysis of fecal microbiota in elderly individuals using 16S rDNA library and T-RFLP
    • Hayashi H, Sakamoto M, Kitahara M, Benno Y. Molecular analysis of fecal microbiota in elderly individuals using 16S rDNA library and T-RFLP. Microbiol Immunol. 2003;47:557-570.
    • (2003) Microbiol Immunol , vol.47 , pp. 557-570
    • Hayashi, H.1    Sakamoto, M.2    Kitahara, M.3    Benno, Y.4
  • 17
    • 0037281247 scopus 로고    scopus 로고
    • Terminal restriction fragment length polymorphism analysis for human fecal microbiota and its application for analysis of complex bifidobacterial communities
    • Sakamoto M, Hayashi H, Benno Y. Terminal restriction fragment length polymorphism analysis for human fecal microbiota and its application for analysis of complex bifidobacterial communities. Microbiol Immunol. 2003;47:133-142.
    • (2003) Microbiol Immunol , vol.47 , pp. 133-142
    • Sakamoto, M.1    Hayashi, H.2    Benno, Y.3
  • 18
    • 0037239111 scopus 로고    scopus 로고
    • Application of terminal RFLP analysis to characterize oral bacterial flora in saliva of healthy subjects and patients with periodontitis
    • Sakamoto M, Takeuchi Y, Umeda M, Ishikawa I, Benno Y. Application of terminal RFLP analysis to characterize oral bacterial flora in saliva of healthy subjects and patients with periodontitis. J Med Microbiol. 2003; 52:79-89.
    • (2003) J Med Microbiol , vol.52 , pp. 79-89
    • Sakamoto, M.1    Takeuchi, Y.2    Umeda, M.3    Ishikawa, I.4    Benno, Y.5
  • 19
    • 27644574002 scopus 로고    scopus 로고
    • Molecular analysis of jejunal, ileal, caecal and recto-sigmoidal human colonic microbiota using 16S rRNA gene libraries and terminal restriction fragment length polymorphism
    • Hayashi H, Takahashi R, Nishi T, Sakamoto M, Benno Y. Molecular analysis of jejunal, ileal, caecal and recto-sigmoidal human colonic microbiota using 16S rRNA gene libraries and terminal restriction fragment length polymorphism. J Med Microbiol. 2005;54:1093-1101.
    • (2005) J Med Microbiol , vol.54 , pp. 1093-1101
    • Hayashi, H.1    Takahashi, R.2    Nishi, T.3    Sakamoto, M.4    Benno, Y.5
  • 20
    • 0033868092 scopus 로고    scopus 로고
    • Terminal restriction fragment length polymorphism analysis program, a web-based research tool for microbial community analysis
    • Marsh TL, Saxman P, Cole J, Tiedje J. Terminal restriction fragment length polymorphism analysis program, a web-based research tool for microbial community analysis. Appl Environ Microbiol. 2000;66:3616-3620.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 3616-3620
    • Marsh, T.L.1    Saxman, P.2    Cole, J.3    Tiedje, J.4
  • 21
    • 0347297590 scopus 로고    scopus 로고
    • Application of new primer-enzyme combinations to terminal restriction fragment length polymorphism profiling of bacterial populations in human feces
    • Nagashima K, Hisada T, Sato M, Mochizuki J. Application of new primer-enzyme combinations to terminal restriction fragment length polymorphism profiling of bacterial populations in human feces. Appl Environ Microbiol. 2003;69:1251-1262.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 1251-1262
    • Nagashima, K.1    Hisada, T.2    Sato, M.3    Mochizuki, J.4
  • 22
    • 0024587677 scopus 로고
    • Coated mesalazine (5-aminosalicylic acid) versus sulphasalazine in the treatment of active ulcerative colitis: A randomised trial
    • Rachmilewitz D. Coated mesalazine (5-aminosalicylic acid) versus sulphasalazine in the treatment of active ulcerative colitis: a randomised trial. BMJ. 1989;298:82-86.
    • (1989) BMJ , vol.298 , pp. 82-86
    • Rachmilewitz, D.1
  • 23
    • 33645241683 scopus 로고    scopus 로고
    • Diversity of the Clostridium coccoides group in human fecal microbiota as determined by 16S rRNA gene library
    • Hayashi H, Sakamoto M, Kitahara M, Benno Y. Diversity of the Clostridium coccoides group in human fecal microbiota as determined by 16S rRNA gene library. FEMS Microbiol Lett. 2006;257:202-207.
    • (2006) FEMS Microbiol Lett , vol.257 , pp. 202-207
    • Hayashi, H.1    Sakamoto, M.2    Kitahara, M.3    Benno, Y.4
  • 24
    • 0029902203 scopus 로고    scopus 로고
    • A computer-simulated restriction fragment length polymorphism analysis of bacterial small-subunit rRNA genes: Efficacy of selected tetrameric restriction enzymes for studies of microbial diversity in nature
    • Moyer CL, Tiedje JM, Dobbs FC, Karl DM. A computer-simulated restriction fragment length polymorphism analysis of bacterial small-subunit rRNA genes: efficacy of selected tetrameric restriction enzymes for studies of microbial diversity in nature. Appl Environ Microbiol. 1996;62:2501-2507.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 2501-2507
    • Moyer, C.L.1    Tiedje, J.M.2    Dobbs, F.C.3    Karl, D.M.4
  • 25
    • 17644367543 scopus 로고    scopus 로고
    • Novel phylogenetic assignment database for terminal-restriction fragment length polymorphism analysis of human colonic microbiota
    • Matsumoto M, Sakamoto M, Hayashi H, Benno Y. Novel phylogenetic assignment database for terminal-restriction fragment length polymorphism analysis of human colonic microbiota. J Microbiol Methods. 2005;61:305-319.
    • (2005) J Microbiol Methods , vol.61 , pp. 305-319
    • Matsumoto, M.1    Sakamoto, M.2    Hayashi, H.3    Benno, Y.4
  • 26
    • 0034056343 scopus 로고    scopus 로고
    • Characterization of antibody responses against rectal mucosa-associated bacterial flora in patients with ulcerative colitis
    • Matsuda H, Fujiyama Y, Andoh A, Ushijima T, Kajinami T, Bamba T. Characterization of antibody responses against rectal mucosa-associated bacterial flora in patients with ulcerative colitis. J Gastroenterol Hepatol. 2000;15:61-68.
    • (2000) J Gastroenterol Hepatol , vol.15 , pp. 61-68
    • Matsuda, H.1    Fujiyama, Y.2    Andoh, A.3    Ushijima, T.4    Kajinami, T.5    Bamba, T.6
  • 27
    • 33646241058 scopus 로고    scopus 로고
    • Prevalence of Bacteroides and Prevotella spp. in ulcerative colitis
    • Lucke K, Miehlke S, Jacobs E, SchupplerM. Prevalence of Bacteroides and Prevotella spp. in ulcerative colitis. J Med Microbiol. 2006;55:617-624.
    • (2006) J Med Microbiol , vol.55 , pp. 617-624
    • Lucke, K.1    Miehlke, S.2    Jacobs, E.3    SchupplerM4
  • 29
    • 0032755259 scopus 로고    scopus 로고
    • Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut
    • Suau A, Bonnet R, Sutren M, et al. Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut. Appl Environ Microbiol. 1999;65:4799-4807.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 4799-4807
    • Suau, A.1    Bonnet, R.2    Sutren, M.3
  • 30
    • 30944466824 scopus 로고    scopus 로고
    • Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach
    • Manichanh C, Rigottier-Gois L, Bonnaud E, et al. Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach. Gut. 2006;55:205-211.
    • (2006) Gut , vol.55 , pp. 205-211
    • Manichanh, C.1    Rigottier-Gois, L.2    Bonnaud, E.3
  • 31
    • 0035040382 scopus 로고    scopus 로고
    • Terminal restriction fragment patterns: A tool for comparing microbial communities and assessing community dynamics
    • Kitts CL. Terminal restriction fragment patterns: a tool for comparing microbial communities and assessing community dynamics. Curr Issues Intest Microbiol. 2001;2:17-25.
    • (2001) Curr Issues Intest Microbiol , vol.2 , pp. 17-25
    • Kitts, C.L.1
  • 32
    • 4844220199 scopus 로고    scopus 로고
    • Marteau P, Lepage P, Mangin Let al. Review article: gut flora and inflammatory bowel disease. Aliment Pharmacol Ther. 2004;20(suppl 4): 18-23.
    • Marteau P, Lepage P, Mangin Let al. Review article: gut flora and inflammatory bowel disease. Aliment Pharmacol Ther. 2004;20(suppl 4): 18-23.
  • 33
    • 18944401261 scopus 로고    scopus 로고
    • Biodiversity of the mucosa-associated microbiota is stable along the distal digestive tract in healthy individuals and patients with IBD
    • Lepage P, Seksik P, Sutren M, et al. Biodiversity of the mucosa-associated microbiota is stable along the distal digestive tract in healthy individuals and patients with IBD. Inflamm Bowel Dis. 2005;11:473-480.
    • (2005) Inflamm Bowel Dis , vol.11 , pp. 473-480
    • Lepage, P.1    Seksik, P.2    Sutren, M.3
  • 34
    • 33645019411 scopus 로고    scopus 로고
    • Specificities of the fecal microbiota in inflammatory bowel disease
    • Sokol H, Seksik P, Rigottier-Gois L, et al. Specificities of the fecal microbiota in inflammatory bowel disease. Inflamm Bowel Dis. 2006; 12:106-111.
    • (2006) Inflamm Bowel Dis , vol.12 , pp. 106-111
    • Sokol, H.1    Seksik, P.2    Rigottier-Gois, L.3
  • 35
    • 2342442430 scopus 로고    scopus 로고
    • Reduction in diversity of the colonic mucosa associated bacterial microflora in patients with active inflammatory bowel disease
    • Ott SJ, Musfeldt M, Wenderoth DF, et al. Reduction in diversity of the colonic mucosa associated bacterial microflora in patients with active inflammatory bowel disease. Gut. 2004;53:685-693.
    • (2004) Gut , vol.53 , pp. 685-693
    • Ott, S.J.1    Musfeldt, M.2    Wenderoth, D.F.3
  • 36
    • 33747050143 scopus 로고    scopus 로고
    • The bacteriology of biopsies differs between newly diagnosed, untreated, Crohn's disease and ulcerative colitis patients
    • Bibiloni R, Mangold M, Madsen KL, Fedorak RN, Tannock GW. The bacteriology of biopsies differs between newly diagnosed, untreated, Crohn's disease and ulcerative colitis patients. J Med Microbiol. 2006; 55:1141-1149.
    • (2006) J Med Microbiol , vol.55 , pp. 1141-1149
    • Bibiloni, R.1    Mangold, M.2    Madsen, K.L.3    Fedorak, R.N.4    Tannock, G.W.5
  • 37
    • 18944382323 scopus 로고    scopus 로고
    • Molecular characterization of rectal mucosa-associated bacterial flora in inflammatory bowel disease
    • Mylonaki M, Rayment NB, Rampton DS, Hudspith BN, Brostoff J. Molecular characterization of rectal mucosa-associated bacterial flora in inflammatory bowel disease. Inflamm Bowel Dis. 2005;11:481-487.
    • (2005) Inflamm Bowel Dis , vol.11 , pp. 481-487
    • Mylonaki, M.1    Rayment, N.B.2    Rampton, D.S.3    Hudspith, B.N.4    Brostoff, J.5
  • 38
    • 0034917801 scopus 로고    scopus 로고
    • Probiotic impact on microbial flora, inflammation and tumour development in IL-10 knock-out mice
    • O'Mahony L, Feeney M, O'Halloran S, et al. Probiotic impact on microbial flora, inflammation and tumour development in IL-10 knock-out mice. Aliment Pharmacol Ther. 2001;15:1219-1225.
    • (2001) Aliment Pharmacol Ther , vol.15 , pp. 1219-1225
    • O'Mahony, L.1    Feeney, M.2    O'Halloran, S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.