-
1
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
Turnbaugh PJ, et al. (2009) A core gut microbiome in obese and lean twins. Nature 457:480-484.
-
(2009)
Nature
, vol.457
, pp. 480-484
-
-
Turnbaugh, P.J.1
-
2
-
-
35348961403
-
An ecological and evolutionary perspective on humang-microbe mutualism and disease
-
DOI 10.1038/nature06245, PII NATURE06245
-
Dethlefsen L, McFall-Ngai M, Relman DA (2007) An ecological and evolutionary perspective on human-microbe mutualism and disease. Nature 449:811-818. (Pubitemid 47598621)
-
(2007)
Nature
, vol.449
, Issue.7164
, pp. 811-818
-
-
Dethlefsen, L.1
McFall-Ngai, M.2
Relman, D.A.3
-
3
-
-
32944466887
-
Ecological and evolutionary forces shaping microbial diversity in the human intestine
-
DOI 10.1016/j.cell.2006.02.017, PII S0092867406001929
-
Ley RE, Peterson DA, Gordon JI (2006) Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 124:837-848. (Pubitemid 43261456)
-
(2006)
Cell
, vol.124
, Issue.4
, pp. 837-848
-
-
Ley, R.E.1
Peterson, D.A.2
Gordon, J.I.3
-
4
-
-
69549086653
-
Functional characterization of the antibiotic resistance reservoir in the human microflora
-
Sommer MO, Dantas G, Church GM (2009) Functional characterization of the antibiotic resistance reservoir in the human microflora. Science 325:1128-1131.
-
(2009)
Science
, vol.325
, pp. 1128-1131
-
-
Sommer, M.O.1
Dantas, G.2
Church, G.M.3
-
5
-
-
4444382949
-
Human intestinal bacteria as reservoirs for antibiotic resistance genes
-
DOI 10.1016/j.tim.2004.07.004, PII S0966842X04001611
-
Salyers AA, Gupta A, Wang Y (2004) Human intestinal bacteria as reservoirs for antibiotic resistance genes. Trends Microbiol 12:412-416. (Pubitemid 39178592)
-
(2004)
Trends in Microbiology
, vol.12
, Issue.9
, pp. 412-416
-
-
Salyers, A.A.1
Gupta, A.2
Wang, Y.3
-
6
-
-
70449703996
-
What are the consequences of the disappearing human microbiota?
-
Blaser MJ, Falkow S (2009) What are the consequences of the disappearing human microbiota? Nat Rev Microbiol 7:887-894.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 887-894
-
-
Blaser, M.J.1
Falkow, S.2
-
7
-
-
1842610064
-
Microbial-gut interactions in health and disease. Antibiotic-associated diarrhoea
-
Beaugerie L, Petit JC (2004) Microbial-gut interactions in health and disease. Antibiotic-associated diarrhoea. Best Pract Res Clin Gastroenterol 18:337-352.
-
(2004)
Best Pract Res Clin Gastroenterol
, vol.18
, pp. 337-352
-
-
Beaugerie, L.1
Petit, J.C.2
-
8
-
-
29544438445
-
Allergic disease and sensitization in Steiner school children
-
DOI 10.1016/j.jaci.2005.09.039, PII S0091674905021287
-
Flöistrup H, et al. (2006) Allergic disease and sensitization in Steiner school children. J Allergy Clin Immunol 117:59-66. (Pubitemid 43017140)
-
(2006)
Journal of Allergy and Clinical Immunology
, vol.117
, Issue.1
, pp. 59-66
-
-
Floistrup, H.1
Swartz, J.2
Bergstrom, A.3
Alm, J.S.4
Scheynius, A.5
Van Hage, M.6
Waser, M.7
Braun-Fahrlander, C.8
Schram-Bijkerk, D.9
Huber, M.10
Zutavern, A.11
Von Mutius, E.12
Ublagger, E.13
Riedler, J.14
Michaels, K.B.15
Pershagen, G.16
Pershagen, G.17
Alfven, T.18
Alm, J.19
Bergstrom, A.20
Engstrand, L.21
Floistrup, H.22
Van Hage, M.23
Hakansson, N.24
Lilja, G.25
Nyberg, F.26
Scheynius, A.27
Swartz, J.28
Wickman, M.29
Braun-Fahrlander, C.30
Waser, M.31
Sennhauser, F.32
Lauener, R.33
Wildhaber, J.34
Moller, A.35
Brunekreef, B.36
Schram-Bijkerk, D.37
Doekes, G.38
Boeve, M.39
Douwes, J.40
Matze, M.41
Benz, M.R.42
Budde, J.43
Ege, M.44
Riedler, J.45
Eder, W.46
Ublagger, E.47
Weiss, G.48
Schreuer, M.49
Michels, K.B.50
more..
-
9
-
-
33645126285
-
Does antibiotic exposure during infancy lead to development of asthma?: A systematic review and metaanalysis
-
Marra F, et al. (2006) Does antibiotic exposure during infancy lead to development of asthma?: A systematic review and metaanalysis. Chest 129:610-618.
-
(2006)
Chest
, vol.129
, pp. 610-618
-
-
Marra, F.1
-
10
-
-
33646413182
-
Mechanisms of disease: The hygiene hypothesis revisited
-
DOI 10.1038/ncpgasthep0471, PII N0471
-
Guarner F, et al. (2006) Mechanisms of disease: The hygiene hypothesis revisited. Nat Clin Pract Gastroenterol Hepatol 3:275-284. (Pubitemid 43675024)
-
(2006)
Nature Clinical Practice Gastroenterology and Hepatology
, vol.3
, Issue.5
, pp. 275-284
-
-
Guarner, F.1
Bourdet-Sicard, R.2
Brandtzaeg, P.3
Gill, H.S.4
McGuirk, P.5
Van Eden, W.6
Versalovic, J.7
Weinstock, J.V.8
Rook, G.A.W.9
-
11
-
-
56849106496
-
The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing
-
Dethlefsen L, Huse S, Sogin ML, Relman DA (2008) The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biol 6:e280.
-
(2008)
PLoS Biol
, vol.6
-
-
Dethlefsen, L.1
Huse, S.2
Sogin, M.L.3
Relman, D.A.4
-
12
-
-
57649244231
-
Parametric models for estimating the number of classes
-
Bunge J, Barger K (2008) Parametric models for estimating the number of classes. Biom J 50:971-982.
-
(2008)
Biom J
, vol.50
, pp. 971-982
-
-
Bunge, J.1
Barger, K.2
-
13
-
-
33646876613
-
Entropy and diversity
-
Jost L (2006) Entropy and diversity. Oikos 113:363-375.
-
(2006)
Oikos
, vol.113
, pp. 363-375
-
-
Jost, L.1
-
14
-
-
33748713890
-
UniFrac - An online tool for comparing microbial community diversity in a phylogenetic context
-
Lozupone C, Hamady M, Knight R (2006) UniFrac - an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics 7:371.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 371
-
-
Lozupone, C.1
Hamady, M.2
Knight, R.3
-
15
-
-
0032967877
-
Distance-based redundancy analysis: Testing multispecies responses in multifactorial ecological experiments
-
Legendre P, Anderson MJ (1999) Distance-based redundancy analysis: Testing multispecies responses in multifactorial ecological experiments. Ecol Monogr 69:1-24. (Pubitemid 29073054)
-
(1999)
Ecological Monographs
, vol.69
, Issue.1
, pp. 1-24
-
-
Legendre, P.1
Andersson, M.J.2
-
16
-
-
33749999805
-
Proposal of Roseburia faecis sp. nov., Roseburia hominis sp. nov. and Roseburia inulinivorans sp. nov., based on isolates from human faeces
-
DOI 10.1099/ijs.0.64098-0
-
Duncan SH, et al. (2006) Proposal of Roseburia faecis sp. nov., Roseburia hominis sp. nov. and Roseburia inulinivorans sp. nov., based on isolates from human faeces. Int J Syst Evol Microbiol 56:2437-2441. (Pubitemid 44566821)
-
(2006)
International Journal of Systematic and Evolutionary Microbiology
, vol.56
, Issue.10
, pp. 2437-2441
-
-
Duncan, S.H.1
Aminov, R.I.2
Scott, K.P.3
Louis, P.4
Stanton, T.B.5
Flint, H.J.6
-
17
-
-
0036739483
-
Roseburia intestinalis sp. nov., a novel saccharolytic, butyrate-producing bacterium from human faeces
-
Duncan SH, Hold GL, Barcenilla A, Stewart CS, Flint HJ (2002) Roseburia intestinalis sp. nov., a novel saccharolytic, butyrate-producing bacterium from human faeces. Int J Syst Evol Microbiol 52:1615-1620.
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 1615-1620
-
-
Duncan, S.H.1
Hold, G.L.2
Barcenilla, A.3
Stewart, C.S.4
Flint, H.J.5
-
18
-
-
35348968286
-
The Human Microbiome Project
-
DOI 10.1038/nature06244, PII NATURE06244
-
Turnbaugh PJ, et al. (2007) The human microbiome project. Nature 449:804-810. (Pubitemid 47598620)
-
(2007)
Nature
, vol.449
, Issue.7164
, pp. 804-810
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Hamady, M.3
Fraser-Liggett, C.M.4
Knight, R.5
Gordon, J.I.6
-
19
-
-
70349233883
-
Towards the human intestinal microbiota phylogenetic core
-
Tap J, et al. (2009) Towards the human intestinal microbiota phylogenetic core. Environ Microbiol 11:2574-2584.
-
(2009)
Environ Microbiol
, vol.11
, pp. 2574-2584
-
-
Tap, J.1
-
20
-
-
38449088143
-
Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes
-
Kurokawa K, et al. (2007) Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes. DNA Res 14:169-181.
-
(2007)
DNA Res
, vol.14
, pp. 169-181
-
-
Kurokawa, K.1
-
21
-
-
0242629042
-
Catastrophic regime shifts in ecosystems: Linking theory to observation
-
DOI 10.1016/j.tree.2003.09.002
-
Scheffer M, Carpenter SR (2003) Catastrophic regime shifts in ecosystems: Linking theory to observation. Trends Ecol Evol 18:648-656. (Pubitemid 37399486)
-
(2003)
Trends in Ecology and Evolution
, vol.18
, Issue.12
, pp. 648-656
-
-
Scheffer, M.1
Carpenter, S.R.2
-
22
-
-
0000653263
-
Compounded perturbations yield ecological surprises
-
Paine RT, Tegner MJ, Johnson EA (1998) Compounded perturbations yield ecological surprises. Ecosystems 1:535-545. (Pubitemid 128664019)
-
(1998)
Ecosystems
, vol.1
, Issue.6
, pp. 535-545
-
-
Paine, R.T.1
Tegner, M.J.2
Johnson, E.A.3
-
23
-
-
34247882011
-
Interactions and competition within the microbial community of the human colon: Links between diet and health: Minireview
-
DOI 10.1111/j.1462-2920.2007.01281.x
-
Flint HJ, Duncan SH, Scott KP, Louis P (2007) Interactions and competition within the microbial community of the human colon: Links between diet and health. Environ Microbiol 9:1101-1111. (Pubitemid 46697267)
-
(2007)
Environmental Microbiology
, vol.9
, Issue.5
, pp. 1101-1111
-
-
Flint, H.J.1
Duncan, S.H.2
Scott, K.P.3
Louis, P.4
-
24
-
-
4444242774
-
Antagonistic activities of lactobacilli and bifidobacteria against microbial pathogens
-
Servin AL (2004) Antagonistic activities of lactobacilli and bifidobacteria against microbial pathogens. FEMS Microbiol Rev 28:405-440.
-
(2004)
FEMS Microbiol Rev
, vol.28
, pp. 405-440
-
-
Servin, A.L.1
-
25
-
-
20444412616
-
Lactobacillus casei DN-114 001 inhibits the ability of adherent-invasive Escherichia coli isolated from Crohn's disease patients to adhere to and to invade intestinal epithelial cells
-
DOI 10.1128/AEM.71.6.2880-2887.2005
-
Ingrassia I, Leplingard A, Darfeuille-Michaud A (2005) Lactobacillus casei DN-114 001 inhibits the ability of adherent-invasive Escherichia coli isolated from Crohn's disease patients to adhere to and to invade intestinal epithelial cells. Appl Environ Microbiol 71:2880-2887. (Pubitemid 40807190)
-
(2005)
Applied and Environmental Microbiology
, vol.71
, Issue.6
, pp. 2880-2887
-
-
Ingrassia, I.1
Leplingard, A.2
Darfeuille-Michaud, A.3
-
26
-
-
34447519312
-
Probiotics affect virulence-related gene expression in Escherichia coli O157:H7
-
DOI 10.1128/AEM.00159-07
-
Medellin-Peña MJ, Wang H, Johnson R, Anand S, Griffiths MW (2007) Probiotics affect virulence-related gene expression in Escherichia coli O157:H7. Appl Environ Microbiol 73:4259-4267. (Pubitemid 47068166)
-
(2007)
Applied and Environmental Microbiology
, vol.73
, Issue.13
, pp. 4259-4267
-
-
Medellin-Pena, M.J.1
Wang, H.2
Johnson, R.3
Anand, S.4
Griffiths, M.W.5
-
27
-
-
41149099000
-
Symbiotic gut microbes modulate human metabolic phenotypes
-
DOI 10.1073/pnas.0712038105
-
Li M, et al. (2008) Symbiotic gut microbes modulate human metabolic phenotypes. Proc Natl Acad Sci USA 105:2117-2122. (Pubitemid 351439474)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.6
, pp. 2117-2122
-
-
Li, M.1
Wang, B.2
Zhang, M.3
Rantalainen, M.4
Wang, S.5
Zhou, H.6
Zhang, Y.7
Shen, J.8
Pang, X.9
Zhang, M.10
Wei, H.11
Chen, Y.12
Lu, H.13
Zuo, J.14
Su, M.15
Qiu, Y.16
Jia, W.17
Xiao, C.18
Smith, L.M.19
Yang, S.20
Holmes, E.21
Tang, H.22
Zhao, G.23
Nicholson, J.K.24
Li, L.25
Zhao, L.26
more..
-
28
-
-
33244467651
-
Bile salt biotransformations by human intestinal bacteria
-
DOI 10.1194/jlr.R500013-JLR200
-
Ridlon JM, Kang DJ, Hylemon PB (2006) Bile salt biotransformations by human intestinal bacteria. J Lipid Res 47:241-259. (Pubitemid 43276911)
-
(2006)
Journal of Lipid Research
, vol.47
, Issue.2
, pp. 241-259
-
-
Ridlon, J.M.1
Kang, D.-J.2
Hylemon, P.B.3
-
29
-
-
0038347102
-
Social strife in the microbial world
-
Velicer GJ (2003) Social strife in the microbial world. Trends Microbiol 11:330-337.
-
(2003)
Trends Microbiol
, vol.11
, pp. 330-337
-
-
Velicer, G.J.1
-
30
-
-
33747160179
-
Social evolution theory for microorganisms
-
DOI 10.1038/nrmicro1461, PII NRMICRO1461
-
West SA, Griffin AS, Gardner A, Diggle SP (2006) Social evolution theory for microorganisms. Nat Rev Microbiol 4:597-607. (Pubitemid 44317022)
-
(2006)
Nature Reviews Microbiology
, vol.4
, Issue.8
, pp. 597-607
-
-
West, S.A.1
Griffin, A.S.2
Gardner, A.3
Diggle, S.P.4
-
31
-
-
33644546686
-
Probiotics to prevent urinary tract infections: The rationale and evidence
-
DOI 10.1007/s00345-005-0043-1
-
Reid G, Bruce AW (2006) Probiotics to prevent urinary tract infections: The rationale and evidence. World J Urol 24:28-32. (Pubitemid 43298680)
-
(2006)
World Journal of Urology
, vol.24
, Issue.1
, pp. 28-32
-
-
Reid, G.1
Bruce, A.W.2
-
32
-
-
0345868847
-
Genotypic and Phenotypic Studies of Murine Intestinal Lactobacilli: Species Differences in Mice with and without Colitis
-
DOI 10.1128/AEM.70.1.558-568.2004
-
Peña JA, et al. (2004) Genotypic and phenotypic studies of murine intestinal lactobacilli: Species differences in mice with and without colitis. Appl Environ Microbiol 70:558-568. (Pubitemid 38090249)
-
(2004)
Applied and Environmental Microbiology
, vol.70
, Issue.1
, pp. 558-568
-
-
Pena, J.A.1
Li, S.Y.2
Wilson, P.H.3
Thibodeau, S.A.4
Szary, A.J.5
Versalovic, J.6
-
33
-
-
33745202268
-
A general model for the evolution of mutualisms
-
Foster KR, Wenseleers T (2006) A general model for the evolution of mutualisms. J Evol Biol 19:1283-1293.
-
(2006)
J Evol Biol
, vol.19
, pp. 1283-1293
-
-
Foster, K.R.1
Wenseleers, T.2
-
34
-
-
1942544371
-
The evolution of cooperation
-
DOI 10.1086/383541
-
Sachs JL, Mueller UG, Wilcox TP, Bull JJ (2004) The evolution of cooperation. Q Rev Biol 79:135-160. (Pubitemid 38774264)
-
(2004)
Quarterly Review of Biology
, vol.79
, Issue.2
, pp. 135-160
-
-
Sachs, J.L.1
Mueller, U.G.2
Wilcox, T.P.3
Bull, J.J.4
-
35
-
-
37549027613
-
SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse E, et al. (2007) SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35: 7188-7196.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
-
36
-
-
38449096471
-
Partitioning diversity into independent alpha and beta components
-
Jost L (2007) Partitioning diversity into independent alpha and beta components. Ecology 88:2427-2439.
-
(2007)
Ecology
, vol.88
, pp. 2427-2439
-
-
Jost, L.1
|