Towards next generation CHO cell biology: Bioinformatics methods for RNA-Seq-based expression profiling

Biotechnology Journal

Volumn 10, Issue 7, 2015, Pages 950-966

  Monger, Craig ^a,b   Kelly, Paul S ^b   Gallagher, Clair ^b   Clynes, Martin ^b   Barron, Niall ^b   Clarke, Colin ^a,b  

^a NATIONAL INSTITUTE FOR BIOPROCESSING RESEARCH AND TRAINING   (Ireland)

^b DUBLIN CITY UNIVERSITY   (Ireland)

Author keywords

Bioinformatics; Chinese hamster ovary; Next generation sequencing; RNA Seq; Transcriptomics

Indexed keywords

CELL CULTURE; CELLS; COST EFFECTIVENESS; CYTOLOGY; GENES; NUCLEIC ACIDS; QUALITY CONTROL; RNA;

ALTERNATIVE SPLICING; BIOINFORMATICS METHODS; CHINESE HAMSTER OVARY; CHINESE HAMSTER OVARY CELLS; NEXT-GENERATION SEQUENCING; TRANSCRIPTION START SITE; TRANSCRIPTOME ASSEMBLIES; TRANSCRIPTOMICS;

BIOINFORMATICS;

MICRORNA; SMALL UNTRANSLATED RNA; TRANSCRIPTOME; MESSENGER RNA;

ALGORITHM; ALTERNATIVE RNA SPLICING; ANIMAL CELL; BIOINFORMATICS; BIOLOGY; CHINESE HAMSTER; CHO CELL LINE; CYTOLOGY; DATA ANALYSIS; GENE EXPRESSION PROFILING; MULTIVARIATE ANALYSIS; NEXT GENERATION SEQUENCING; NONHUMAN; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN EXPRESSION; QUALITY CONTROL; REVIEW; RNA SEQUENCE; TRANSCRIPTION INITIATION SITE; ANIMAL; BIOSYNTHESIS; CRICETULUS; GENETICS; HAMSTER; HIGH THROUGHPUT SEQUENCING;

CRICETULUS GRISEUS;

ANIMALS; CHO CELLS; COMPUTATIONAL BIOLOGY; CRICETINAE; CRICETULUS; GENE EXPRESSION PROFILING; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; MICRORNAS; RNA, MESSENGER; TRANSCRIPTOME;

EID: 84935691970     PISSN: 18606768     EISSN: 18607314     Source Type: Journal    
DOI: 10.1002/biot.201500107     Document Type: Review

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