메뉴 건너뛰기




Volumn 31, Issue 2, 2015, Pages 166-169

HTSeq-A Python framework to work with high-throughput sequencing data

Author keywords

[No Author keywords available]

Indexed keywords

GENE EXPRESSION REGULATION; GENOMICS; HIGH THROUGHPUT SEQUENCING; HUMAN; HUMAN GENOME; PROCEDURES; SOFTWARE;

EID: 84928987900     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu638     Document Type: Article
Times cited : (14311)

References (14)
  • 1
    • 34547418487 scopus 로고    scopus 로고
    • SWIG: An easy to use tool for integrating scripting languages with C and C++
    • Beazley, D.M. et al. (1996) SWIG: an easy to use tool for integrating scripting languages with C and C++. In: Proceedings of the 4th USENIX Tcl/Tk workshop. pp. 129-139.
    • (1996) Proceedings of the 4th USENIX Tcl/Tk Workshop. , pp. 129-139
    • Beazley, D.M.1
  • 2
    • 79952600759 scopus 로고    scopus 로고
    • Cython: The best of both worlds
    • Behnel, S. et al. (2011) Cython: the best of both worlds. Comput. Sci. Eng., 13, 31-39.
    • (2011) Comput. Sci. Eng. , vol.13 , pp. 31-39
    • Behnel, S.1
  • 3
    • 84905049901 scopus 로고    scopus 로고
    • Trimmomatic: A flexible trimmer for illumina sequence data
    • Bolger, A.M. et al. (2014) Trimmomatic: a flexible trimmer for illumina sequence data. Bioinformatics, 30, 2114-2120.
    • (2014) Bioinformatics , vol.30 , pp. 2114-2120
    • Bolger, A.M.1
  • 4
    • 65649092976 scopus 로고    scopus 로고
    • Biopython: Freely available Python tools for computational molecular biology and bioinformatics
    • Cock, P.J. et al. (2009) Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics, 25, 1422-1423.
    • (2009) Bioinformatics , vol.25 , pp. 1422-1423
    • Cock, P.J.1
  • 5
    • 83355177243 scopus 로고    scopus 로고
    • Pybedtools: A flexible Python library for manipulating genomic datasets and annotations
    • Dale, R.K. et al. (2011) Pybedtools: a flexible Python library for manipulating genomic datasets and annotations. Bioinformatics, 27, 3423-3424.
    • (2011) Bioinformatics , vol.27 , pp. 3423-3424
    • Dale, R.K.1
  • 6
    • 84907500627 scopus 로고    scopus 로고
    • RNA-seq gene profiling-A systematic empirical comparison
    • Fonseca, N.A. et al. (2014) RNA-seq gene profiling-A systematic empirical comparison. PLoS ONE, 9, e107026.
    • (2014) PLoS ONE , vol.9 , pp. e107026
    • Fonseca, N.A.1
  • 7
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: Open software development for computational biology and bioinformatics
    • Gentleman, R.C. et al. (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol., 5, R80.
    • (2004) Genome Biol. , vol.5 , pp. R80
    • Gentleman, R.C.1
  • 9
    • 84883368195 scopus 로고    scopus 로고
    • Software for computing and annotating genomic ranges
    • Lawrence, M. et al. (2013) Software for computing and annotating genomic ranges. PLoS Comput. Biol., 9, e1003118.
    • (2013) PLoS Comput. Biol. , vol.9 , pp. e1003118
    • Lawrence, M.1
  • 10
    • 84897397058 scopus 로고    scopus 로고
    • Featurecounts: An efficient general purpose program for assigning sequence reads to genomic features
    • Liao, Y. et al. (2014) featurecounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics, 30, 923-930.
    • (2014) Bioinformatics , vol.30 , pp. 923-930
    • Liao, Y.1
  • 11
    • 84907338296 scopus 로고    scopus 로고
    • Moderated estimation of fold change and dispersion for RNA-Seq data with DESeq2
    • doi:10.1101/002832
    • Love, M.I. et al. (2014) Moderated estimation of fold change and dispersion for RNA-Seq data with DESeq2. bioRxiv, doi:10.1101/002832.
    • (2014) BioRxiv
    • Love, M.I.1
  • 12
    • 77951770756 scopus 로고    scopus 로고
    • Bedtools: A flexible suite of utilities for comparing genomic features
    • Quinlan, A.R. and Hall, I.M. (2010) Bedtools: a flexible suite of utilities for comparing genomic features. Bioinformatics, 26, 841-842.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 13
    • 75249087100 scopus 로고    scopus 로고
    • EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson, M.D. et al. (2010) edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics, 26, 139-140.
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1
  • 14
    • 79952595565 scopus 로고    scopus 로고
    • The NumPy array: A structure for efficient numerical computation
    • van der Walt, S. et al. (2011) The NumPy array: a structure for efficient numerical computation. Comput. Sci. Eng., 13, 2230.
    • (2011) Comput. Sci. Eng. , vol.13 , pp. 2230
    • Van Der Walt, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.