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Volumn 56, Issue 11, 2008, Pages 1033-1042

Factors in tissue handling and processing that impact RNA obtained from formalin-fixed, paraffin-embedded tissue

Author keywords

Formalin fixed; Gene expression; Paraffin embedded; Real time RT PCR; RNA integrity; Tissue fixation and processing

Indexed keywords

BUFFER; FORMALDEHYDE; PARAFFIN; PHOSPHATE; RNA;

EID: 54349086286     PISSN: 00221554     EISSN: None     Source Type: Journal    
DOI: 10.1369/jhc.2008.951863     Document Type: Article
Times cited : (132)

References (21)
  • 2
    • 15044365131 scopus 로고    scopus 로고
    • DNA and RNA obtained from Bouin's fixed tissues
    • Bonin S, Petrera F, Rosai J, Stanta G (2005) DNA and RNA obtained from Bouin's fixed tissues. J Clin Pathol 58:313-316
    • (2005) J Clin Pathol , vol.58 , pp. 313-316
    • Bonin, S.1    Petrera, F.2    Rosai, J.3    Stanta, G.4
  • 4
    • 33751381986 scopus 로고    scopus 로고
    • Optimization of recovery of RNA from formalin-fixed paraffin-embedded tissue
    • Chung JY, Braunschweig T, Hewitt SM (2006) Optimization of recovery of RNA from formalin-fixed paraffin-embedded tissue. Diagn Mol Pathol 15:229-236
    • (2006) Diagn Mol Pathol , vol.15 , pp. 229-236
    • Chung, J.Y.1    Braunschweig, T.2    Hewitt, S.M.3
  • 6
    • 1542469713 scopus 로고    scopus 로고
    • Measurement of gene expression in archival paraffin-embedded tissues: Development and performance of a 92-gene reverse transcriptase-polymerase chain reaction assay
    • Cronin M, Pho M, Dutta D, Stephans JC, Shak S, Kiefer MC, Esteban JM, et al. (2004) Measurement of gene expression in archival paraffin-embedded tissues: development and performance of a 92-gene reverse transcriptase-polymerase chain reaction assay. Am J Pathol 164:35-42
    • (2004) Am J Pathol , vol.164 , pp. 35-42
    • Cronin, M.1    Pho, M.2    Dutta, D.3    Stephans, J.C.4    Shak, S.5    Kiefer, M.C.6    Esteban, J.M.7
  • 7
    • 0027399391 scopus 로고
    • An improved strategy and a useful housekeeping gene for RNA analysis from formalin-fixed, paraffin-embedded tissue by PCR
    • Finke J, Fritzen R, Ternes P, Lange W, Dölken G (1993) An improved strategy and a useful housekeeping gene for RNA analysis from formalin-fixed, paraffin-embedded tissue by PCR. Biotechniques 14:448-453
    • (1993) Biotechniques , vol.14 , pp. 448-453
    • Finke, J.1    Fritzen, R.2    Ternes, P.3    Lange, W.4    Dölken, G.5
  • 8
    • 0034189805 scopus 로고    scopus 로고
    • Quantitative mRNA expression analysis from formalin-fixed, paraffin-embedded tissues using 5′ nuclease quantitative reverse transcription-polymerase chain reaction
    • Godfrey TE, Kim SH, Chavira M, Ruff DW, Warren RS, Gray JW, Jensen RH (2000) Quantitative mRNA expression analysis from formalin-fixed, paraffin-embedded tissues using 5′ nuclease quantitative reverse transcription-polymerase chain reaction. J Mol Diagn 2:84-91
    • (2000) J Mol Diagn , vol.2 , pp. 84-91
    • Godfrey, T.E.1    Kim, S.H.2    Chavira, M.3    Ruff, D.W.4    Warren, R.S.5    Gray, J.W.6    Jensen, R.H.7
  • 9
    • 54349089696 scopus 로고    scopus 로고
    • Hewitt SM, Lewis F, Cao Y, Conrad RC, Cronin M, Danenberg KD, Goralski TJ, et al. (In Press) Tissue handling and specimen preparation in surgical pathology: issues concerning the recovery of nucleic acids from formalin fixed, paraffin embedded tissue. Arch Pathol Lab Med
    • Hewitt SM, Lewis F, Cao Y, Conrad RC, Cronin M, Danenberg KD, Goralski TJ, et al. (In Press) Tissue handling and specimen preparation in surgical pathology: issues concerning the recovery of nucleic acids from formalin fixed, paraffin embedded tissue. Arch Pathol Lab Med
  • 11
    • 0037082153 scopus 로고    scopus 로고
    • An evaluation of tyramide signal amplification and archived fixed and frozen tissue in microarray gene expression analysis
    • Karsten SL, Van Deerlin VM, Sabatti C, Gill LH, Geschwind DH (2002) An evaluation of tyramide signal amplification and archived fixed and frozen tissue in microarray gene expression analysis. Nucleic Acids Res 30:E4
    • (2002) Nucleic Acids Res , vol.30
    • Karsten, S.L.1    Van Deerlin, V.M.2    Sabatti, C.3    Gill, L.H.4    Geschwind, D.H.5
  • 12
    • 10544252269 scopus 로고    scopus 로고
    • An enhanced-sensitivity branched-DNA assay for quantification of human immunodeficiency virus type 1 RNA in plasma
    • Kern D, Collins M, Fultz T, Detmer J, Hamren S, Peterkin JJ, Sheridan P, et al. (1996) An enhanced-sensitivity branched-DNA assay for quantification of human immunodeficiency virus type 1 RNA in plasma. J Clin Microbiol 34:3196-3202
    • (1996) J Clin Microbiol , vol.34 , pp. 3196-3202
    • Kern, D.1    Collins, M.2    Fultz, T.3    Detmer, J.4    Hamren, S.5    Peterkin, J.J.6    Sheridan, P.7
  • 13
    • 0000863117 scopus 로고    scopus 로고
    • Optimization of the isolation and amplification of RNA from formalin-fixed, paraffin-embedded tissue: The armed forces institute of pathology experience and literature review
    • Krafft AE, Duncan BW, Bijwaard KE, Taubenberger JK, Lichy JH (1997) Optimization of the isolation and amplification of RNA from formalin-fixed, paraffin-embedded tissue: the armed forces institute of pathology experience and literature review. Mol Diagn 2:217-230
    • (1997) Mol Diagn , vol.2 , pp. 217-230
    • Krafft, A.E.1    Duncan, B.W.2    Bijwaard, K.E.3    Taubenberger, J.K.4    Lichy, J.H.5
  • 16
    • 0033571272 scopus 로고    scopus 로고
    • Analysis of chemical modification of RNA from formalin-fixed samples and optimization of molecular biology applications for such samples
    • Masuda N, Ohnishi T, Kawamoto S, Monden M, Okubo K (1999) Analysis of chemical modification of RNA from formalin-fixed samples and optimization of molecular biology applications for such samples. Nucleic Acids Res 27:4436-4443
    • (1999) Nucleic Acids Res , vol.27 , pp. 4436-4443
    • Masuda, N.1    Ohnishi, T.2    Kawamoto, S.3    Monden, M.4    Okubo, K.5
  • 19
    • 0023832964 scopus 로고
    • Purification and analysis of RNA from paraffin embedded tissue
    • Rupp GM, Locker J (1988) Purification and analysis of RNA from paraffin embedded tissue. Biotechniques 6:56-60
    • (1988) Biotechniques , vol.6 , pp. 56-60
    • Rupp, G.M.1    Locker, J.2
  • 20
    • 0026092887 scopus 로고
    • The AMeX method: A multipurpose tissue-processing and paraffin-embedding method. III. Extraction and purification of RNA and application to slot-blot hybridization analysis
    • Sato Y, Mukai K, Furuya S, Shimosato Y (1991) The AMeX method: a multipurpose tissue-processing and paraffin-embedding method. III. Extraction and purification of RNA and application to slot-blot hybridization analysis. J Pathol 163:81-85
    • (1991) J Pathol , vol.163 , pp. 81-85
    • Sato, Y.1    Mukai, K.2    Furuya, S.3    Shimosato, Y.4
  • 21
    • 0034049097 scopus 로고    scopus 로고
    • Methacarn fixation: A novel tool for analysis of gene expressions in paraffin-embedded tissue specimens
    • Shibutani M, Uneyama C, Miyazaki K, Toyoda K, Hirose M (2000) Methacarn fixation: a novel tool for analysis of gene expressions in paraffin-embedded tissue specimens. Lab Invest 80:199-208
    • (2000) Lab Invest , vol.80 , pp. 199-208
    • Shibutani, M.1    Uneyama, C.2    Miyazaki, K.3    Toyoda, K.4    Hirose, M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.