Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Nature Biotechnology

Volumn 28, Issue 5, 2010, Pages 511-515

  Trapnell, Cole ^a,b,c   Williams, Brian A ^d   Pertea, Geo ^b   Mortazavi, Ali ^d   Kwan, Gordon ^d   Van Baren, Marijke J ^e   Salzberg, Steven L ^a,b   Wold, Barbara J ^d   Pachter, Lior ^c  

^a University of Maryland ^*  (United States)

^b Bldg 142   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

^e WASHINGTON UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ABUNDANCE ESTIMATION; CELL DIFFERENTIATION; EXPRESSION DATA; GENE ANNOTATION; GENOME ANNOTATION; HIGH-THROUGHPUT; HOMOLOGOUS GENES; ISOFORMS; MUSCLE DEVELOPMENT; MYOBLAST CELLS; OPEN-SOURCE SOFTWARES; TRANSCRIPTION START SITE; TRANSCRIPTOMES;

CELL CULTURE; GENES; RNA; TIME SERIES; TIME SWITCHES;

TRANSCRIPTION;

RNA; TRANSCRIPTOME;

ALGORITHM; ANIMAL CELL; ARTICLE; CELL DIFFERENTIATION; GENE EXPRESSION; GENOME; HIGH THROUGHPUT SCREENING; MOUSE; MUSCLE DEVELOPMENT; MYOBLAST; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; RNA SEQUENCE; RNA TRANSCRIPTION;

ALGORITHMS; ANIMALS; CELL DIFFERENTIATION; CELL LINE; GENE EXPRESSION PROFILING; GENOME; MICE; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROTEIN ISOFORMS; PROTO-ONCOGENE PROTEINS C-MYC; RNA, MESSENGER; SEQUENCE ANALYSIS, RNA; SOFTWARE;

EID: 77952123055     PISSN: 10870156     EISSN: 15461696     Source Type: Journal    
DOI: 10.1038/nbt.1621     Document Type: Article

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