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Volumn 109, Issue 6, 2012, Pages 1386-1394

Utilization and evaluation of CHO-specific sequence databases for mass spectrometry based proteomics

Author keywords

CHO sequence data; MS; Protein identification; Proteomics

Indexed keywords

CHINESE HAMSTER OVARY CELLS; DIRECT ANALYSIS; MS; PROTEIN IDENTIFICATION; PROTEOMIC ANALYSIS; PROTEOMIC IDENTIFICATION; PROTEOMICS; SEQUENCE DATA; SEQUENCE DATABASE; SEQUENCE HOMOLOGY; SPECIFIC SEQUENCES;

EID: 84859895625     PISSN: 00063592     EISSN: 10970290     Source Type: Journal    
DOI: 10.1002/bit.24476     Document Type: Article
Times cited : (39)

References (44)
  • 2
    • 74849109669 scopus 로고    scopus 로고
    • A DIGE approach for the assessment of differential expression of the CHO proteome under sodium butyrate addition: Effect of Bcl-xL overexpression
    • Baik JY, Lee GM. 2010. A DIGE approach for the assessment of differential expression of the CHO proteome under sodium butyrate addition: Effect of Bcl-xL overexpression. Biotechnol Bioeng 105(2): 358- 367.
    • (2010) Biotechnol Bioeng , vol.105 , Issue.2 , pp. 358-367
    • Baik, J.Y.1    Lee, G.M.2
  • 3
    • 33645573249 scopus 로고    scopus 로고
    • Initial transcriptome and proteome analyses of low culture temperature-induced expression in CHO cells producing erythropoietin
    • Baik JY, Lee MS, An SR, Yoon SK, Joo EJ, Kim YH, Park HW, Lee GM. 2006. Initial transcriptome and proteome analyses of low culture temperature-induced expression in CHO cells producing erythropoietin. Biotechnol Bioeng 93: 361- 371.
    • (2006) Biotechnol Bioeng , vol.93 , pp. 361-371
    • Baik, J.Y.1    Lee, M.S.2    An, S.R.3    Yoon, S.K.4    Joo, E.J.5    Kim, Y.H.6    Park, H.W.7    Lee, G.M.8
  • 8
    • 84988074679 scopus 로고
    • Improved silver staining of plant proteins, RNA and DNA in polyacrylamide gels
    • Blum H, Beier H, Gross HJ. 1987. Improved silver staining of plant proteins, RNA and DNA in polyacrylamide gels. Electrophoresis 8: 93- 99.
    • (1987) Electrophoresis , vol.8 , pp. 93-99
    • Blum, H.1    Beier, H.2    Gross, H.J.3
  • 9
    • 65349110331 scopus 로고    scopus 로고
    • Mining transcriptome data for function-trait relationship of hyper productivity of recombinant antibody
    • Charaniya S, Karypis G, Hu W-S. 2009. Mining transcriptome data for function-trait relationship of hyper productivity of recombinant antibody. Biotechnol Bioeng 102(6): 1654- 1669.
    • (2009) Biotechnol Bioeng , vol.102 , Issue.6 , pp. 1654-1669
    • Charaniya, S.1    Karypis, G.2    Hu, W.-S.3
  • 12
    • 77951555640 scopus 로고    scopus 로고
    • Microarray and proteomics expression profiling identifies several candidates, including the valosin-containing protein (VCP), involved in regulating high cellular growth rate in production CHO cell lines
    • Doolan P, Meleady P, Barron N, Henry M, Gallagher R, Gammell P, Melville M, Sinacore M, McCarthy K, Leonard M, Charlebois T, Clynes M. 2010. Microarray and proteomics expression profiling identifies several candidates, including the valosin-containing protein (VCP), involved in regulating high cellular growth rate in production CHO cell lines. Biotechnol Bioeng 106: 42- 56.
    • (2010) Biotechnol Bioeng , vol.106 , pp. 42-56
    • Doolan, P.1    Meleady, P.2    Barron, N.3    Henry, M.4    Gallagher, R.5    Gammell, P.6    Melville, M.7    Sinacore, M.8    McCarthy, K.9    Leonard, M.10    Charlebois, T.11    Clynes, M.12
  • 13
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass-spectral data of peptides with amino-acid-sequences in a protein database
    • Eng JK, Mccormack AL, Yates JR. 1994. An approach to correlate tandem mass-spectral data of peptides with amino-acid-sequences in a protein database. J Am Soc Mass Spectrom 5: 976- 989.
    • (1994) J Am Soc Mass Spectrom , vol.5 , pp. 976-989
    • Eng, J.K.1    Mccormack, A.L.2    Yates, J.R.3
  • 14
    • 36348977702 scopus 로고    scopus 로고
    • Evaluation of a genomics platform for cross-species transcriptome analysis of recombinant CHO cells
    • Ernst W, Trummer E, Mead J, Bessant C, Strelec H, Katinger H, Hesse F. 2006. Evaluation of a genomics platform for cross-species transcriptome analysis of recombinant CHO cells. Biotechnol J 1(6): 639- 650.
    • (2006) Biotechnol J , vol.1 , Issue.6 , pp. 639-650
    • Ernst, W.1    Trummer, E.2    Mead, J.3    Bessant, C.4    Strelec, H.5    Katinger, H.6    Hesse, F.7
  • 15
    • 34250307966 scopus 로고    scopus 로고
    • Initial identification of low temperature and culture stage induction of miRNA expression in suspension CHO-K1 cells
    • Gammell P, Barron N, Kumar N, Clynes M. 2007. Initial identification of low temperature and culture stage induction of miRNA expression in suspension CHO-K1 cells. J Biotechnol 130: 213- 218.
    • (2007) J Biotechnol , vol.130 , pp. 213-218
    • Gammell, P.1    Barron, N.2    Kumar, N.3    Clynes, M.4
  • 16
    • 0032961627 scopus 로고    scopus 로고
    • Mass spectrometric identification of proteins from silver-stained polyacrylamide gel: A method for the removal of silver ions to enhance sensitivity
    • Gharahdaghi F, Weinberg CR, Meagher DA, Imai BS, Mische SM. 1999. Mass spectrometric identification of proteins from silver-stained polyacrylamide gel: A method for the removal of silver ions to enhance sensitivity. Electrophoresis 20: 601- 605.
    • (1999) Electrophoresis , vol.20 , pp. 601-605
    • Gharahdaghi, F.1    Weinberg, C.R.2    Meagher, D.A.3    Imai, B.S.4    Mische, S.M.5
  • 17
    • 34250169808 scopus 로고    scopus 로고
    • Genomics and proteomics in process development: Opportunities and challenges
    • Gupta P, Lee KH. 2007. Genomics and proteomics in process development: Opportunities and challenges. Trends Biotechnol 25: 324- 330.
    • (2007) Trends Biotechnol , vol.25 , pp. 324-330
    • Gupta, P.1    Lee, K.H.2
  • 19
    • 79251576820 scopus 로고    scopus 로고
    • Genomic sequencing and analysis of a Chinese hamster ovary cell line using Illumina sequencing technology
    • Hammond S, Swanberg JC, Kaplarevic M, Lee KH. 2011. Genomic sequencing and analysis of a Chinese hamster ovary cell line using Illumina sequencing technology. BMC Genomics 12: 67.
    • (2011) BMC Genomics , vol.12 , pp. 67
    • Hammond, S.1    Swanberg, J.C.2    Kaplarevic, M.3    Lee, K.H.4
  • 20
    • 70749150540 scopus 로고    scopus 로고
    • Using genomic tools to improve the production of biologics Chem
    • Jacob NM, Hu W-S, Loo BLW, Yap M. 2009. Using genomic tools to improve the production of biologics Chem. Eng Prog 105(11): 35- 42.
    • (2009) Eng Prog , vol.105 , Issue.11 , pp. 35-42
    • Jacob, N.M.1    Hu, W.-S.2    Loo, B.L.W.3    Yap, M.4
  • 22
    • 41249093488 scopus 로고    scopus 로고
    • Genomic and proteomic exploration of CHO and hybridoma cells under sodium butyrate treatment
    • Joon CY, Gatti MDL, Philp RJ, Yap M, Hu W-S. 2008a. Genomic and proteomic exploration of CHO and hybridoma cells under sodium butyrate treatment. Biotechnol Bioeng 99(5): 1186- 1204.
    • (2008) Biotechnol Bioeng , vol.99 , Issue.5 , pp. 1186-1204
    • Joon, C.Y.1    Gatti, M.D.L.2    Philp, R.J.3    Yap, M.4    Hu, W.-S.5
  • 23
    • 56749148174 scopus 로고    scopus 로고
    • Quality assessment of cross-species hybridization of CHO transcriptome on a mouse DNA oligo microarray
    • Joon CY, Wlaschin KF, Song HC, Nissom PM, Hu W-S. 2008b. Quality assessment of cross-species hybridization of CHO transcriptome on a mouse DNA oligo microarray. Biotechnol Bioeng 101(6): 1359- 1365.
    • (2008) Biotechnol Bioeng , vol.101 , Issue.6 , pp. 1359-1365
    • Joon, C.Y.1    Wlaschin, K.F.2    Song, H.C.3    Nissom, P.M.4    Hu, W.-S.5
  • 25
    • 73149087029 scopus 로고    scopus 로고
    • Transcriptome and proteome analysis of Chinese hamster ovary cells under low temperature and butyrate treatment
    • Kantardjieff A, Jacob NM, Yee JC, Epstein E, Kok Y-J, Philp R, Betenbaugh M, Hu W-S. 2010. Transcriptome and proteome analysis of Chinese hamster ovary cells under low temperature and butyrate treatment. J Biotechnol 145(2): 143- 159.
    • (2010) J Biotechnol , vol.145 , Issue.2 , pp. 143-159
    • Kantardjieff, A.1    Jacob, N.M.2    Yee, J.C.3    Epstein, E.4    Kok, Y.-J.5    Philp, R.6    Betenbaugh, M.7    Hu, W.-S.8
  • 26
    • 34250191004 scopus 로고    scopus 로고
    • Differences in optimal pH and temperature for cell growth and antibody production between two Chinese hamster ovary clones derived from the same parental clone
    • Kim SH, Lee GM. 2007. Differences in optimal pH and temperature for cell growth and antibody production between two Chinese hamster ovary clones derived from the same parental clone. J Microbiol Biotechnol 17(5): 712- 720.
    • (2007) J Microbiol Biotechnol , vol.17 , Issue.5 , pp. 712-720
    • Kim, S.H.1    Lee, G.M.2
  • 27
    • 77956230926 scopus 로고    scopus 로고
    • Methods in mammalian cell line engineering: From random mutagenesis to sequence-specific approaches
    • Krämer O, Klausing S, Noll T. 2010. Methods in mammalian cell line engineering: From random mutagenesis to sequence-specific approaches. Appl Microbiol Biotechnol 88(2): 425- 436.
    • (2010) Appl Microbiol Biotechnol , vol.88 , Issue.2 , pp. 425-436
    • Krämer, O.1    Klausing, S.2    Noll, T.3
  • 30
    • 72849144434 scopus 로고    scopus 로고
    • Sequencing technologies - the next generation
    • Metzker ML. 2010. Sequencing technologies - the next generation. Nat Rev Genet 11: 31- 46.
    • (2010) Nat Rev Genet , vol.11 , pp. 31-46
    • Metzker, M.L.1
  • 33
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins DN, Pappin DJ, Creasy DM, Cottrell JS. 1999. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20: 3551- 3567.
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.2    Creasy, D.M.3    Cottrell, J.S.4
  • 34
    • 78650204558 scopus 로고    scopus 로고
    • Selection of CHO host cell subclones with increased specific antibody production rates by repeated cycles of transient transfection and cell sorting
    • Pichler J, Galosy S, Mott J, Borth N. 2011. Selection of CHO host cell subclones with increased specific antibody production rates by repeated cycles of transient transfection and cell sorting. Biotechnol Bioeng 108(2): 386- 394.
    • (2011) Biotechnol Bioeng , vol.108 , Issue.2 , pp. 386-394
    • Pichler, J.1    Galosy, S.2    Mott, J.3    Borth, N.4
  • 35
    • 77954076709 scopus 로고    scopus 로고
    • Intraclonal protein expression heterogeneity in recombinant CHO cells
    • Pilbrough W, Munro TP, Gray P. 2009. Intraclonal protein expression heterogeneity in recombinant CHO cells. PLoS ONE 4(12): e8432.
    • (2009) PLoS ONE , vol.4 , Issue.12
    • Pilbrough, W.1    Munro, T.P.2    Gray, P.3
  • 36
    • 84873782420 scopus 로고
    • Genetics of somatic mammalian cells. III. Long-term cultivation of euploid cells from human and animal subjects
    • Puck TT, Cieciura SJ, Robinson A. 1958. Genetics of somatic mammalian cells. III. Long-term cultivation of euploid cells from human and animal subjects. J Exp Med 108: 945- 956.
    • (1958) J Exp Med , vol.108 , pp. 945-956
    • Puck, T.T.1    Cieciura, S.J.2    Robinson, A.3
  • 39
    • 0002844767 scopus 로고    scopus 로고
    • Systematic analysis of peptide recoveries from in-gel digestions for protein identifications in proteome studies
    • Speicher K, Kolbas O, Harper S, Speicher D. 2000. Systematic analysis of peptide recoveries from in-gel digestions for protein identifications in proteome studies. J Biomol Tech 11: 74- 86.
    • (2000) J Biomol Tech , vol.11 , pp. 74-86
    • Speicher, K.1    Kolbas, O.2    Harper, S.3    Speicher, D.4
  • 40
    • 77956690413 scopus 로고    scopus 로고
    • Biopharmaceutical benchmarks 2010
    • Walsh G. 2010. Biopharmaceutical benchmarks 2010. Nat Biotechnol 28: 917- 924.
    • (2010) Nat Biotechnol , vol.28 , pp. 917-924
    • Walsh, G.1
  • 41
    • 8344271026 scopus 로고    scopus 로고
    • Production of recombinant protein therapeutics in cultivated mammalian cells
    • Wurm FM. 2004. Production of recombinant protein therapeutics in cultivated mammalian cells. Nat Biotechnol 22: 1393- 1398.
    • (2004) Nat Biotechnol , vol.22 , pp. 1393-1398
    • Wurm, F.M.1
  • 42
    • 41249093488 scopus 로고    scopus 로고
    • Genomic and proteomic exploration of CHO and hybridoma cells under sodium butyrate treatment
    • Yee JC, Gatti MD, Philp RJ, Yap M, Hu WS. 2008. Genomic and proteomic exploration of CHO and hybridoma cells under sodium butyrate treatment. Biotechnol Bioeng 99: 1186- 1204.
    • (2008) Biotechnol Bioeng , vol.99 , pp. 1186-1204
    • Yee, J.C.1    Gatti, M.D.2    Philp, R.J.3    Yap, M.4    Hu, W.S.5
  • 43
    • 58149214612 scopus 로고    scopus 로고
    • Comparative transcriptome analysis to unveil genes affecting recombinant protein productivity in mammalian cells
    • Yee JC, Gerdtzen ZP, Hu W-S. 2009. Comparative transcriptome analysis to unveil genes affecting recombinant protein productivity in mammalian cells. Biotechnol Bioeng 102(1): 246- 263.
    • (2009) Biotechnol Bioeng , vol.102 , Issue.1 , pp. 246-263
    • Yee, J.C.1    Gerdtzen, Z.P.2    Hu, W.-S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.