Bamtools: A C++ API and toolkit for analyzing and managing BAM files

Bioinformatics

Volumn 27, Issue 12, 2011, Pages 1691-1692

  Barnett, Derek W ^a   Garrison, Erik K ^a   Quinlan, Aaron R ^b   Str̈mberg, Michael P ^c   Marth, Gabor T ^a  

^a BOSTON COLLEGE   (United States)

^b UNIVERSITY OF VIRGINIA   (United States)

^c ILLUMINA INC   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER PROGRAM; DNA SEQUENCE; GENOMICS; METHODOLOGY; SEQUENCE ALIGNMENT;

GENOMICS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SOFTWARE;

EID: 79958151996     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr174     Document Type: Article

References (5)

1. The 1000 Genomes Project Consortium. (2010)Amap of human genome variation from population-scale sequencing. Nature, 467, 1061-1073.
2. Kent,W.J. et al. (2002) The human genome browser at UCSC. Genome Res., 12, 996-1106.
3. Li,H. et al. (2009) The sequence alignment/map format and SAMtools. Bionformatics., 25, 2078-2079.
4. McKenna, A. et al. (2010) The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res., 20, 1297-303.
5. Quinlan, A.R. et al. (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bionformatics., 26, 841-842.