-
1
-
-
0015356037
-
Purification of biologically active globin messenger RNA by chromatography on oligothymidylic acid-cellulose
-
Aviv, H. & Leder, P. Purification of biologically active globin messenger RNA by chromatography on oligothymidylic acid-cellulose. Proc. Natl. Acad. Sci. USA 69, 1408-1412 (1972).
-
(1972)
Proc. Natl. Acad. Sci. USA
, vol.69
, pp. 1408-1412
-
-
Aviv, H.1
Leder, P.2
-
2
-
-
79951551684
-
Genomewide characterization of non-polyadenylated RNAs
-
Yang, L., Duff, M.O., Graveley, B.R., Carmichael, G.G. & Chen, L.L. Genomewide characterization of non-polyadenylated RNAs. Genome Biol. 12, R16 (2011).
-
(2011)
Genome Biol.
, vol.12
-
-
Yang, L.1
Duff, M.O.2
Graveley, B.R.3
Carmichael, G.G.4
Chen, L.L.5
-
3
-
-
67349146589
-
MRNA-Seq whole-transcriptome analysis of a single cell
-
Tang, F. et al. mRNA-Seq whole-transcriptome analysis of a single cell. Nat. Methods 6, 377-382 (2009).
-
(2009)
Nat. Methods
, vol.6
, pp. 377-382
-
-
Tang, F.1
-
4
-
-
84864880991
-
Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells
-
Ramsköld, D. et al. Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells. Nat. Biotechnol. 30, 777-782 (2012).
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 777-782
-
-
Ramsköld, D.1
-
5
-
-
79959403670
-
Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq
-
Islam, S. et al. Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq. Genome Res. 21, 1160-1167 (2011).
-
(2011)
Genome Res.
, vol.21
, pp. 1160-1167
-
-
Islam, S.1
-
7
-
-
84864967988
-
Selective depletion of rRNA enables whole transcriptome profiling of archival fixed tissue
-
Morlan, J.D., Qu, K. & Sinicropi, D.V. Selective depletion of rRNA enables whole transcriptome profiling of archival fixed tissue. PLoS ONE 7, e42882 (2012).
-
(2012)
PLoS ONE
, vol.7
-
-
Morlan, J.D.1
Qu, K.2
Sinicropi, D.V.3
-
8
-
-
80755152322
-
An RNA-Seq strategy to detect the complete coding and non-coding transcriptome including full-length imprinted macro ncRNAs
-
Huang, R. et al. An RNA-Seq strategy to detect the complete coding and non-coding transcriptome including full-length imprinted macro ncRNAs. PLoS ONE 6, e27288 (2011).
-
(2011)
PLoS ONE
, vol.6
-
-
Huang, R.1
-
9
-
-
80455168272
-
Duplex-specific nuclease efficiently removes rRNA for prokaryotic RNA-seq
-
Yi, H. et al. Duplex-specific nuclease efficiently removes rRNA for prokaryotic RNA-seq. Nucleic Acids Res. 39, e140 (2011).
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Yi, H.1
-
10
-
-
80054053911
-
Whole-transcriptome RNAseq analysis from minute amount of total RNA
-
Tariq, M.A., Kim, H.J., Jejelowo, O. & Pourmand, N. Whole-transcriptome RNAseq analysis from minute amount of total RNA. Nucleic Acids Res. 39, e120 (2011).
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Tariq, M.A.1
Kim, H.J.2
Jejelowo, O.3
Pourmand, N.4
-
11
-
-
77956340995
-
Comprehensive comparative analysis of strand-specific RNA sequencing methods
-
Levin, J.Z. et al. Comprehensive comparative analysis of strand-specific RNA sequencing methods. Nat. Methods 7, 709-715 (2010).
-
(2010)
Nat. Methods
, vol.7
, pp. 709-715
-
-
Levin, J.Z.1
-
12
-
-
84861743958
-
RNA-SeQC: RNA-seq metrics for quality control and process optimization
-
DeLuca, D.S. et al. RNA-SeQC: RNA-seq metrics for quality control and process optimization. Bioinformatics 28, 1530-1532 (2012).
-
(2012)
Bioinformatics
, vol.28
, pp. 1530-1532
-
-
Deluca, D.S.1
-
13
-
-
0024021747
-
Splice site selection, rate of splicing, and alternative splicing on nascent transcripts
-
Beyer, A.L. & Osheim, Y.N. Splice site selection, rate of splicing, and alternative splicing on nascent transcripts. Genes Dev. 2, 754-765 (1988).
-
(1988)
Genes Dev.
, vol.2
, pp. 754-765
-
-
Beyer, A.L.1
Osheim, Y.N.2
-
14
-
-
1342294092
-
Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
-
Yang, Y.H. et al. Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res. 30, e15 (2002).
-
(2002)
Nucleic Acids Res.
, vol.30
-
-
Yang, Y.H.1
-
15
-
-
79951694175
-
Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries
-
Aird, D. et al. Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries. Genome Biol. 12, R18 (2011).
-
(2011)
Genome Biol.
, vol.12
-
-
Aird, D.1
-
16
-
-
51749102658
-
Characterizing the mouse ES cell transcriptome with Illumina sequencing
-
Rosenkranz, R., Borodina, T., Lehrach, H. & Himmelbauer, H. Characterizing the mouse ES cell transcriptome with Illumina sequencing. Genomics 92, 187-194 (2008).
-
(2008)
Genomics
, vol.92
, pp. 187-194
-
-
Rosenkranz, R.1
Borodina, T.2
Lehrach, H.3
Himmelbauer, H.4
-
17
-
-
84858990515
-
Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes
-
Giannoukos, G. et al. Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes. Genome Biol. 13, R23 (2012).
-
(2012)
Genome Biol.
, vol.13
-
-
Giannoukos, G.1
-
18
-
-
84861400566
-
Simplified and versatile method for isolation of high-quality RNA from pancreas
-
Griffin, M., Abu-El-Haija, M., Abu-El-Haija, M., Rokhlina, T. & Uc, A. Simplified and versatile method for isolation of high-quality RNA from pancreas. Biotechniques 52, 332-334 (2012).
-
(2012)
Biotechniques
, vol.52
, pp. 332-334
-
-
Griffin, M.1
Abu-El-Haija, M.2
Abu-El-Haija, M.3
Rokhlina, T.4
Uc, A.5
-
19
-
-
84872194966
-
Two methods for full-length RNA sequencing for low quantities of cells and single cells
-
Pan, X. et al. Two methods for full-length RNA sequencing for low quantities of cells and single cells. Proc. Natl. Acad. Sci. USA 110, 594-599 (2013).
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 594-599
-
-
Pan, X.1
-
20
-
-
79952709611
-
Improving RNA-Seq expression estimates by correcting for fragment bias
-
Roberts, A., Trapnell, C., Donaghey, J., Rinn, J.L. & Pachter, L. Improving RNA-Seq expression estimates by correcting for fragment bias. Genome Biol. 12, R22 (2011).
-
(2011)
Genome Biol.
, vol.12
-
-
Roberts, A.1
Trapnell, C.2
Donaghey, J.3
Rinn, J.L.4
Pachter, L.5
-
21
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
22
-
-
0023243526
-
Clones of human ribosomal DNA containing the complete 18 S-rRNA and 28 S-rRNA genes. Characterization, a detailed map of the human ribosomal transcription unit and diversity among clones
-
Maden, B.E. et al. Clones of human ribosomal DNA containing the complete 18 S-rRNA and 28 S-rRNA genes. Characterization, a detailed map of the human ribosomal transcription unit and diversity among clones. Biochem. J. 246, 519-527 (1987).
-
(1987)
Biochem. J.
, vol.246
, pp. 519-527
-
-
Maden, B.E.1
-
23
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell, C., Pachter, L. & Salzberg, S.L. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105-1111 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
24
-
-
84859865967
-
The UCSC genome browser database: Extensions and updates 2011
-
Dreszer, T.R. et al. The UCSC Genome Browser database: extensions and updates 2011. Nucleic Acids Res. 40, D918-D923 (2012).
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Dreszer, T.R.1
-
25
-
-
79961123152
-
RSEM: Accurate transcript quantification from RNA-Seq data with or without a reference genome
-
Li, B. & Dewey, C.N. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics 12, 323 (2011).
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 323
-
-
Li, B.1
Dewey, C.N.2
-
26
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead, B., Trapnell, C., Pop, M. & Salzberg, S.L. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25 (2009).
-
(2009)
Genome Biol.
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
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