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Volumn 13, Issue 1, 2012, Pages

Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes

Author keywords

At rich; Clinical isolate; Exponential; Illumina; Isothermal; Library; Linear; Malaria; Next generation sequencing; PCR; PCR free; Plasmodium falciparum; Tetramethyammonium chloride

Indexed keywords

SINGLE STRANDED DNA; BACTERIOPHAGE T7 RNA POLYMERASE; DNA DIRECTED RNA POLYMERASE; VIRUS PROTEIN;

EID: 84855219212     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-13-1     Document Type: Article
Times cited : (178)

References (16)
  • 1
    • 0037015580 scopus 로고    scopus 로고
    • The grand assault
    • 10.1038/419493a, 12368861
    • Doolittle RF. The grand assault. Nature 2002, 419(6906):493-494. 10.1038/419493a, 12368861.
    • (2002) Nature , vol.419 , Issue.6906 , pp. 493-494
    • Doolittle, R.F.1
  • 3
    • 52649157765 scopus 로고    scopus 로고
    • Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
    • 10.1093/nar/gkn425, 2532726, 18660515
    • Dohm JC, Lottaz C, Borodina T, Himmelbauer H. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res 2008, 36(16):e105. 10.1093/nar/gkn425, 2532726, 18660515.
    • (2008) Nucleic Acids Res , vol.36 , Issue.16
    • Dohm, J.C.1    Lottaz, C.2    Borodina, T.3    Himmelbauer, H.4
  • 4
    • 79951694175 scopus 로고    scopus 로고
    • Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries
    • 10.1186/gb-2011-12-2-r18, 3188800, 21338519
    • Aird D, Ross MG, Chen WS, Danielsson M, Fennell T, Russ C, Jaffe DB, Nusbaum C, Gnirke A. Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries. Genome Biol 2011, 12(2):R18. 10.1186/gb-2011-12-2-r18, 3188800, 21338519.
    • (2011) Genome Biol , vol.12 , Issue.2
    • Aird, D.1    Ross, M.G.2    Chen, W.S.3    Danielsson, M.4    Fennell, T.5    Russ, C.6    Jaffe, D.B.7    Nusbaum, C.8    Gnirke, A.9
  • 5
    • 77955595663 scopus 로고    scopus 로고
    • Optimization of protocol for sequencing of difficult templates
    • 2884315, 20592873
    • Kieleczawa J, Mazaika E. Optimization of protocol for sequencing of difficult templates. J Biomol Tech 2010, 21(2):97-102. 2884315, 20592873.
    • (2010) J Biomol Tech , vol.21 , Issue.2 , pp. 97-102
    • Kieleczawa, J.1    Mazaika, E.2
  • 6
    • 63949083912 scopus 로고    scopus 로고
    • Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes
    • 10.1038/nmeth.1311, 2664327, 19287394
    • Kozarewa I, Ning Z, Quail MA, Sanders MJ, Berriman M, Turner DJ. Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes. Nat Methods 2009, 6(4):291-295. 10.1038/nmeth.1311, 2664327, 19287394.
    • (2009) Nat Methods , vol.6 , Issue.4 , pp. 291-295
    • Kozarewa, I.1    Ning, Z.2    Quail, M.A.3    Sanders, M.J.4    Berriman, M.5    Turner, D.J.6
  • 7
    • 0029151279 scopus 로고
    • Low concentrations of tetramethylammonium chloride increase yield and specificity of PCR
    • 10.1093/nar/23.16.3343, 307197, 7667112
    • Chevet E, Lemaitre G, Katinka MD. Low concentrations of tetramethylammonium chloride increase yield and specificity of PCR. Nucleic Acids Res 1995, 23(16):3343-3344. 10.1093/nar/23.16.3343, 307197, 7667112.
    • (1995) Nucleic Acids Res , vol.23 , Issue.16 , pp. 3343-3344
    • Chevet, E.1    Lemaitre, G.2    Katinka, M.D.3
  • 9
    • 77949646852 scopus 로고    scopus 로고
    • BamView: viewing mapped read alignment data in the context of the reference sequence
    • 10.1093/bioinformatics/btq010, 2828118, 20071372
    • Carver T, Bohme U, Otto TD, Parkhill J, Berriman M. BamView: viewing mapped read alignment data in the context of the reference sequence. Bioinformatics 2010, 26(5):676-677. 10.1093/bioinformatics/btq010, 2828118, 20071372.
    • (2010) Bioinformatics , vol.26 , Issue.5 , pp. 676-677
    • Carver, T.1    Bohme, U.2    Otto, T.D.3    Parkhill, J.4    Berriman, M.5
  • 11
    • 33745879767 scopus 로고    scopus 로고
    • DNA detection using recombination proteins
    • 10.1371/journal.pbio.0040204, 1475771, 16756388
    • Piepenburg O, Williams CH, Stemple DL, Armes NA. DNA detection using recombination proteins. PLoS Biol 2006, 4(7):e204. 10.1371/journal.pbio.0040204, 1475771, 16756388.
    • (2006) PLoS Biol , vol.4 , Issue.7
    • Piepenburg, O.1    Williams, C.H.2    Stemple, D.L.3    Armes, N.A.4
  • 12
    • 79959882452 scopus 로고    scopus 로고
    • Linear amplification for deep sequencing
    • 10.1038/nprot.2011.345, 21720315
    • Hoeijmakers WA, Bartfai R, Francoijs KJ, Stunnenberg HG. Linear amplification for deep sequencing. Nat Protoc 2011, 6(7):1026-1036. 10.1038/nprot.2011.345, 21720315.
    • (2011) Nat Protoc , vol.6 , Issue.7 , pp. 1026-1036
    • Hoeijmakers, W.A.1    Bartfai, R.2    Francoijs, K.J.3    Stunnenberg, H.G.4
  • 13
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • 10.1093/bioinformatics/btp324, 2705234, 19451168
    • Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009, 25(14):1754-1760. 10.1093/bioinformatics/btp324, 2705234, 19451168.
    • (2009) Bioinformatics , vol.25 , Issue.14 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 15
    • 84863304598 scopus 로고    scopus 로고
    • A language and environment for statistical computing
    • Vienna, Austria, Computing RFfS, R-Development-Core-Team
    • R-Development-Core-Team A language and environment for statistical computing. R: A Language and Environment for Statistical Computing. 2010, Vienna, Austria, Computing RFfS, R-Development-Core-Team.
    • (2010) R: A Language and Environment for Statistical Computing.
  • 16
    • 77954523593 scopus 로고    scopus 로고
    • Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology
    • 10.1093/bioinformatics/btq269, 2894513, 20562415
    • Otto TD, Sanders M, Berriman M, Newbold C. Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology. Bioinformatics 2010, 26(14):1704-1707. 10.1093/bioinformatics/btq269, 2894513, 20562415.
    • (2010) Bioinformatics , vol.26 , Issue.14 , pp. 1704-1707
    • Otto, T.D.1    Sanders, M.2    Berriman, M.3    Newbold, C.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.