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Volumn 61, Issue , 2013, Pages 289-317

The role of DNA methylation and histone modifications in transcriptional regulation in humans

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE; RNA;

EID: 84894225898     PISSN: 03060225     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-94-007-4525-4_13     Document Type: Article
Times cited : (186)

References (189)
  • 1
    • 35148867907 scopus 로고    scopus 로고
    • UTX and JMJD3 are histone H3K27 demethylases involved in HOX gene regulation and development
    • Agger K, Cloos PA, Christensen J, Pasini D, Rose S, Rappsilber J et al (2007) UTX and JMJD3 are histone H3K27 demethylases involved in HOX gene regulation and development. Nature 449(7163): 731-734.
    • (2007) Nature , vol.449 , Issue.7163 , pp. 731-734
    • Agger, K.1    Cloos, P.A.2    Christensen, J.3    Pasini, D.4    Rose, S.5    Rappsilber, J.6
  • 2
    • 0018903045 scopus 로고
    • Proteolytic processing of histone H3 in chromatin: A physiologically regulated event in tetrahymena micronuclei
    • Allis CD, Bowen JK, Abraham GN, Glover CV, Gorovsky MA (1980) Proteolytic processing of histone H3 in chromatin: a physiologically regulated event in tetrahymena micronuclei. Cell 20(1): 55-64.
    • (1980) Cell , vol.20 , Issue.1 , pp. 55-64
    • Allis, C.D.1    Bowen, J.K.2    Abraham, G.N.3    Glover, C.V.4    Gorovsky, M.A.5
  • 3
    • 0027141519 scopus 로고
    • Number of CpG islands and genes in human and mouse
    • Antequera F, Bird A (1993) Number of CpG islands and genes in human and mouse. Proc Natl Acad Sci USA 90(24): 11995-11999.
    • (1993) Proc Natl Acad Sci USA , vol.90 , Issue.24 , pp. 11995-11999
    • Antequera, F.1    Bird, A.2
  • 4
    • 77649276054 scopus 로고    scopus 로고
    • Histone H3 thr 45 phosphorylation is a replication-associated post-translational modification in S. cerevisiae
    • Baker SP, Phillips J, Anderson S, Qiu Q, Shabanowitz J, Smith MM et al (2010) Histone H3 thr 45 phosphorylation is a replication-associated post-translational modification in S. cerevisiae. Nat Cell Biol 12(3): 294-298.
    • (2010) Nat Cell Biol , vol.12 , Issue.3 , pp. 294-298
    • Baker, S.P.1    Phillips, J.2    Anderson, S.3    Qiu, Q.4    Shabanowitz, J.5    Smith, M.M.6
  • 5
    • 79952534189 scopus 로고    scopus 로고
    • Regulation of chromatin by histone modifications
    • Bannister AJ, Kouzarides T (2011) Regulation of chromatin by histone modifications. Cell Res 21(3): 381-395.
    • (2011) Cell Res , vol.21 , Issue.3 , pp. 381-395
    • Bannister, A.J.1    Kouzarides, T.2
  • 6
    • 0037188911 scopus 로고    scopus 로고
    • Histone methylation: Dynamic or static?
    • Bannister AJ, Schneider R, Kouzarides T (2002) Histone methylation: dynamic or static? Cell 109(7): 801-806.
    • (2002) Cell , vol.109 , Issue.7 , pp. 801-806
    • Bannister, A.J.1    Schneider, R.2    Kouzarides, T.3
  • 7
    • 0028040875 scopus 로고
    • The POZ domain: A conserved protein-protein interaction motif
    • Bardwell VJ, Treisman R (1994) The POZ domain: a conserved protein-protein interaction motif. Genes Dev 8(14): 1664-1677.
    • (1994) Genes Dev , vol.8 , Issue.14 , pp. 1664-1677
    • Bardwell, V.J.1    Treisman, R.2
  • 8
    • 34249026300 scopus 로고    scopus 로고
    • High-resolution profiling of histone methylations in the human genome
    • Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z et al (2007) High-resolution profiling of histone methylations in the human genome. Cell 129(4): 823-837.
    • (2007) Cell , vol.129 , Issue.4 , pp. 823-837
    • Barski, A.1    Cuddapah, S.2    Cui, K.3    Roh, T.Y.4    Schones, D.E.5    Wang, Z.6
  • 9
    • 0034713375 scopus 로고    scopus 로고
    • Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene
    • Bell AC, Felsenfeld G (2000) Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene. Nature 405(6785): 482-485.
    • (2000) Nature , vol.405 , Issue.6785 , pp. 482-485
    • Bell, A.C.1    Felsenfeld, G.2
  • 10
    • 33646070846 scopus 로고    scopus 로고
    • A bivalent chromatin structure marks key developmental genes in embryonic stem cells
    • Bernstein BE, Mikkelsen TS, Xie X, Kamal M, Huebert DJ, Cuff J et al (2006) A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125(2): 315-326.
    • (2006) Cell , vol.125 , Issue.2 , pp. 315-326
    • Bernstein, B.E.1    Mikkelsen, T.S.2    Xie, X.3    Kamal, M.4    Huebert, D.J.5    Cuff, J.6
  • 11
    • 0023701018 scopus 로고
    • Cloning and sequencing of a cDNA encoding DNA methyltransferase of mouse cells. The carboxyl-terminal domain of the mammalian enzymes is related to bacterial restriction methyltransferases
    • Bestor T, Laudano A, Mattaliano R, Ingram V (1988) Cloning and sequencing of a cDNA encoding DNA methyltransferase of mouse cells. The carboxyl-terminal domain of the mammalian enzymes is related to bacterial restriction methyltransferases. J Mol Biol 203(4): 971-983.
    • (1988) J Mol Biol , vol.203 , Issue.4 , pp. 971-983
    • Bestor, T.1    Laudano, A.2    Mattaliano, R.3    Ingram, V.4
  • 12
    • 0036144048 scopus 로고    scopus 로고
    • DNA methylation patterns and epigenetic memory
    • Bird A (2002) DNA methylation patterns and epigenetic memory. Genes Dev 16(1): 6-21.
    • (2002) Genes Dev , vol.16 , Issue.1 , pp. 6-21
    • Bird, A.1
  • 13
    • 0033601073 scopus 로고    scopus 로고
    • Methylation-induced repression-belts, braces, and chromatin
    • Bird AP, Wolffe AP (1999) Methylation-induced repression-belts, braces, and chromatin. Cell 99(5): 451-454.
    • (1999) Cell , vol.99 , Issue.5 , pp. 451-454
    • Bird, A.P.1    Wolffe, A.P.2
  • 16
    • 13444270415 scopus 로고    scopus 로고
    • Myc represses transcription through recruitment of DNA methyltransferase corepressor
    • Brenner C, Deplus R, Didelot C, Loriot A, Vire E, De Smet C et al (2005) Myc represses transcription through recruitment of DNA methyltransferase corepressor. EMBO J 24(2): 336-346.
    • (2005) EMBO J , vol.24 , Issue.2 , pp. 336-346
    • Brenner, C.1    Deplus, R.2    Didelot, C.3    Loriot, A.4    Vire, E.5    De Smet, C.6
  • 17
    • 0035933521 scopus 로고    scopus 로고
    • Recruitment of HAT complexes by direct activator interactions with the ATM-related Tra1 subunit
    • Brown CE, Howe L, Sousa K, Alley SC, Carrozza MJ, Tan S et al (2001) Recruitment of HAT complexes by direct activator interactions with the ATM-related Tra1 subunit. Science (New York, NY) 292(5525): 2333-2337.
    • (2001) Science (New York, NY) , vol.292 , Issue.5525 , pp. 2333-2337
    • Brown, C.E.1    Howe, L.2    Sousa, K.3    Alley, S.C.4    Carrozza, M.J.5    Tan, S.6
  • 18
    • 0029984469 scopus 로고    scopus 로고
    • Tetrahymena histone acetyltransferase A: A homolog to yeast Gcn5p linking histone acetylation to gene activation
    • Brownell JE, Zhou J, Ranalli T, Kobayashi R, Edmondson DG, Roth SY et al (1996) Tetrahymena histone acetyltransferase A: a homolog to yeast Gcn5p linking histone acetylation to gene activation. Cell 84(6): 843-851.
    • (1996) Cell , vol.84 , Issue.6 , pp. 843-851
    • Brownell, J.E.1    Zhou, J.2    Ranalli, T.3    Kobayashi, R.4    Edmondson, D.G.5    Roth, S.Y.6
  • 20
    • 27744577727 scopus 로고    scopus 로고
    • Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription
    • Carrozza MJ, Li B, Florens L, Suganuma T, Swanson SK, Lee KK et al (2005) Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription. Cell 123(4): 581-592.
    • (2005) Cell , vol.123 , Issue.4 , pp. 581-592
    • Carrozza, M.J.1    Li, B.2    Florens, L.3    Suganuma, T.4    Swanson, S.K.5    Lee, K.K.6
  • 21
    • 67650119862 scopus 로고    scopus 로고
    • Structural insight into histone recognition by the ING PHDfingers
    • Champagne KS, Kutateladze TG (2009) Structural insight into histone recognition by the ING PHDfingers. Curr Drug Targets 10(5): 432-441.
    • (2009) Curr Drug Targets , vol.10 , Issue.5 , pp. 432-441
    • Champagne, K.S.1    Kutateladze, T.G.2
  • 22
    • 80053132089 scopus 로고    scopus 로고
    • Deciphering arginine methylation: Tudor tells the tale
    • Chen C, Nott TJ, Jin J, Pawson T (2011) Deciphering arginine methylation: tudor tells the tale. Nat Rev Mol Cell Biol 12(10): 629-642.
    • (2011) Nat Rev Mol Cell Biol , vol.12 , Issue.10 , pp. 629-642
    • Chen, C.1    Nott, T.J.2    Jin, J.3    Pawson, T.4
  • 23
    • 0029036310 scopus 로고
    • CpNpG methylation in mammalian cells
    • Clark SJ, Harrison J, Frommer M (1995) CpNpG methylation in mammalian cells. Nat Genet 10(1): 20-27.
    • (1995) Nat Genet , vol.10 , Issue.1 , pp. 20-27
    • Clark, S.J.1    Harrison, J.2    Frommer, M.3
  • 24
    • 33746332412 scopus 로고    scopus 로고
    • The putative oncogene GASC1 demethylates tri-and dimethylated lysine 9 on histone H3
    • Cloos PA, Christensen J, Agger K, Maiolica A, Rappsilber J, Antal T et al (2006) The putative oncogene GASC1 demethylates tri-and dimethylated lysine 9 on histone H3. Nature 442(7100): 307-311.
    • (2006) Nature , vol.442 , Issue.7100 , pp. 307-311
    • Cloos, P.A.1    Christensen, J.2    Agger, K.3    Maiolica, A.4    Rappsilber, J.5    Antal, T.6
  • 25
    • 58049191558 scopus 로고    scopus 로고
    • Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation
    • Cui K, Zang C, Roh TY, Schones DE, Childs RW, Peng W et al (2009) Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation. Cell Stem Cell 4(1): 80-93.
    • (2009) Cell Stem Cell , vol.4 , Issue.1 , pp. 80-93
    • Cui, K.1    Zang, C.2    Roh, T.Y.3    Schones, D.E.4    Childs, R.W.5    Peng, W.6
  • 27
    • 33646346610 scopus 로고    scopus 로고
    • Epigenetic deregulation of imprinting in congenital diseases of aberrant growth
    • Delaval K, Wagschal A, Feil R (2006) Epigenetic deregulation of imprinting in congenital diseases of aberrant growth. BioEssays News Rev Mol Cell Dev Biol 28(5): 453-459.
    • (2006) BioEssays News Rev Mol Cell Dev Biol , vol.28 , Issue.5 , pp. 453-459
    • Delaval, K.1    Wagschal, A.2    Feil, R.3
  • 28
    • 0038527642 scopus 로고    scopus 로고
    • Methyltransferase recruitment and DNA hypermethylation of target promoters by an oncogenic transcription factor
    • Di Croce L, Raker VA, Corsaro M, Fazi F, Fanelli M, Faretta M et al (2002) Methyltransferase recruitment and DNA hypermethylation of target promoters by an oncogenic transcription factor. Science (New York, NY) 295(5557): 1079-1082.
    • (2002) Science (New York, NY) , vol.295 , Issue.5557 , pp. 1079-1082
    • Di Croce, L.1    Raker, V.A.2    Corsaro, M.3    Fazi, F.4    Fanelli, M.5    Faretta, M.6
  • 29
    • 70649095120 scopus 로고    scopus 로고
    • Differential methylation of tissue-and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells andfibroblasts
    • Doi A, Park IH, Wen B, Murakami P, Aryee MJ, Irizarry R et al (2009) Differential methylation of tissue-and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells andfibroblasts. Nat Genet 41(12): 1350-1353.
    • (2009) Nat Genet , vol.41 , Issue.12 , pp. 1350-1353
    • Doi, A.1    Park, I.H.2    Wen, B.3    Murakami, P.4    Aryee, M.J.5    Irizarry, R.6
  • 30
    • 53549094681 scopus 로고    scopus 로고
    • Cathepsin L proteolytically processes histone H3 during mouse embryonic stem cell differentiation
    • Duncan EM, Muratore-Schroeder TL, Cook RG, Garcia BA, Shabanowitz J, Hunt DF et al (2008) Cathepsin L proteolytically processes histone H3 during mouse embryonic stem cell differentiation. Cell 135(2): 284-294.
    • (2008) Cell , vol.135 , Issue.2 , pp. 284-294
    • Duncan, E.M.1    Muratore-Schroeder, T.L.2    Cook, R.G.3    Garcia, B.A.4    Shabanowitz, J.5    Hunt, D.F.6
  • 31
    • 0020489781 scopus 로고
    • Amount and distribution of 5-methylcytosine in human DNA from different types of tissues of cells
    • Ehrlich M, Gama-Sosa MA, Huang LH, Midgett RM, Kuo KC, McCune RA et al (1982) Amount and distribution of 5-methylcytosine in human DNA from different types of tissues of cells. Nucleic Acids Res 10(8): 2709-2721.
    • (1982) Nucleic Acids Res , vol.10 , Issue.8 , pp. 2709-2721
    • Ehrlich, M.1    Gama-Sosa, M.A.2    Huang, L.H.3    Midgett, R.M.4    Kuo, K.C.5    McCune, R.A.6
  • 32
    • 78650747491 scopus 로고    scopus 로고
    • Discovery and characterization of chromatin states for systematic annotation of the human genome
    • Ernst J, Kellis M (2010) Discovery and characterization of chromatin states for systematic annotation of the human genome. Nat Biotechnol 28(8): 817-825.
    • (2010) Nat Biotechnol , vol.28 , Issue.8 , pp. 817-825
    • Ernst, J.1    Kellis, M.2
  • 33
    • 33947315736 scopus 로고    scopus 로고
    • Cancer epigenomics: DNA methylomes and histone-modification maps
    • Esteller M (2007) Cancer epigenomics: DNA methylomes and histone-modification maps. Nat Rev Genet 8(4): 286-298.
    • (2007) Nat Rev Genet , vol.8 , Issue.4 , pp. 286-298
    • Esteller, M.1
  • 34
    • 0037172665 scopus 로고    scopus 로고
    • Methylation of H3-lysine 79 is mediated by a new family of HMTases without a SET domain
    • Feng Q, Wang H, Ng HH, Erdjument-Bromage H, Tempst P, Struhl K et al (2002) Methylation of H3-lysine 79 is mediated by a new family of HMTases without a SET domain. Curr Biol (CB) 12(12): 1052-1058.
    • (2002) Curr Biol (CB) , vol.12 , Issue.12 , pp. 1052-1058
    • Feng, Q.1    Wang, H.2    Ng, H.H.3    Erdjument-Bromage, H.4    Tempst, P.5    Struhl, K.6
  • 35
    • 79956323623 scopus 로고    scopus 로고
    • Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation
    • Ficz G, Branco MR, Seisenberger S, Santos F, Krueger F, Hore TA et al (2011) Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation. Nature 473(7347): 398-402.
    • (2011) Nature , vol.473 , Issue.7347 , pp. 398-402
    • Ficz, G.1    Branco, M.R.2    Seisenberger, S.3    Santos, F.4    Krueger, F.5    Hore, T.A.6
  • 36
    • 28844477653 scopus 로고    scopus 로고
    • Regulation of HP1-chromatin binding by histone H3 methylation and phosphorylation
    • Fischle W, Tseng BS, Dormann HL, Ueberheide BM, Garcia BA, Shabanowitz J et al (2005) Regulation of HP1-chromatin binding by histone H3 methylation and phosphorylation. Nature 438(7071): 1116-1122.
    • (2005) Nature , vol.438 , Issue.7071 , pp. 1116-1122
    • Fischle, W.1    Tseng, B.S.2    Dormann, H.L.3    Ueberheide, B.M.4    Garcia, B.A.5    Shabanowitz, J.6
  • 37
    • 33745146571 scopus 로고    scopus 로고
    • Jmjd2b antagonizes H3K9 trimethylation at pericentric heterochromatin in mammalian cells
    • Fodor BD, Kubicek S, Yonezawa M, O'Sullivan RJ, Sengupta R, Perez-Burgos L et al (2006) Jmjd2b antagonizes H3K9 trimethylation at pericentric heterochromatin in mammalian cells. Genes Dev 20(12): 1557-1562.
    • (2006) Genes Dev , vol.20 , Issue.12 , pp. 1557-1562
    • Fodor, B.D.1    Kubicek, S.2    Yonezawa, M.3    O'Sullivan, R.J.4    Sengupta, R.5    Perez-Burgos, L.6
  • 39
    • 33846690407 scopus 로고    scopus 로고
    • Histone methylation-dependent mechanisms impose ligand dependency for gene activation by nuclear receptors
    • Garcia-Bassets I, Kwon YS, Telese F, Prefontaine GG, Hutt KR, Cheng CS et al (2007) Histone methylation-dependent mechanisms impose ligand dependency for gene activation by nuclear receptors. Cell 128(3): 505-518.
    • (2007) Cell , vol.128 , Issue.3 , pp. 505-518
    • Garcia-Bassets, I.1    Kwon, Y.S.2    Telese, F.3    Prefontaine, G.G.4    Hutt, K.R.5    Cheng, C.S.6
  • 40
    • 28044471827 scopus 로고    scopus 로고
    • Acetylation and deacetylation of non-histone proteins
    • Glozak MA, Sengupta N, Zhang X, Seto E (2005) Acetylation and deacetylation of non-histone proteins. Gene 363: 15-23.
    • (2005) Gene , vol.363 , pp. 15-23
    • Glozak, M.A.1    Sengupta, N.2    Zhang, X.3    Seto, E.4
  • 41
    • 77955497472 scopus 로고    scopus 로고
    • Phosphorylated Pol II CTD recruits multiple HDACs, including Rpd3C(S), for methylation-dependent deacetylation of ORF nucleosomes
    • Govind CK, Qiu H, Ginsburg DS, Ruan C, Hofmeyer K, Hu C et al (2010) Phosphorylated Pol II CTD recruits multiple HDACs, including Rpd3C(S), for methylation-dependent deacetylation of ORF nucleosomes. Mol Cell 39(2): 234-246.
    • (2010) Mol Cell , vol.39 , Issue.2 , pp. 234-246
    • Govind, C.K.1    Qiu, H.2    Ginsburg, D.S.3    Ruan, C.4    Hofmeyer, K.5    Hu, C.6
  • 42
    • 0030797349 scopus 로고    scopus 로고
    • Yeast Gcn5 functions in two multisubunit complexes to acetylate nucleosomal histones: Characterization of an ada complex and the SAGA (Spt/Ada) complex
    • Grant PA, Duggan L, Cote J, Roberts SM, Brownell JE, Candau R et al (1997) Yeast Gcn5 functions in two multisubunit complexes to acetylate nucleosomal histones: characterization of an ada complex and the SAGA (Spt/Ada) complex. Genes Dev 11(13): 1640-1650.
    • (1997) Genes Dev , vol.11 , Issue.13 , pp. 1640-1650
    • Grant, P.A.1    Duggan, L.2    Cote, J.3    Roberts, S.M.4    Brownell, J.E.5    Candau, R.6
  • 43
    • 0032504104 scopus 로고    scopus 로고
    • A subset of TAF(II)s are integral components of the SAGA complex required for nucleosome acetylation and transcriptional stimulation
    • Grant PA, Schieltz D, Pray-Grant MG, Steger DJ, Reese JC, Yates JR 3rd et al (1998) A subset of TAF(II)s are integral components of the SAGA complex required for nucleosome acetylation and transcriptional stimulation. Cell 94(1): 45-53.
    • (1998) Cell , vol.94 , Issue.1 , pp. 45-53
    • Grant, P.A.1    Schieltz, D.2    Pray-Grant, M.G.3    Steger, D.J.4    Reese, J.C.5    Yates, J.R.6
  • 44
    • 57749086992 scopus 로고    scopus 로고
    • Di-methyl H4 lysine 20 targets the checkpoint protein Crb2 to sites of DNA damage
    • Greeson NT, Sengupta R, Arida AR, Jenuwein T, Sanders SL (2008) Di-methyl H4 lysine 20 targets the checkpoint protein Crb2 to sites of DNA damage. J Biol Chem 283(48): 33168-33174.
    • (2008) J Biol Chem , vol.283 , Issue.48 , pp. 33168-33174
    • Greeson, N.T.1    Sengupta, R.2    Arida, A.R.3    Jenuwein, T.4    Sanders, S.L.5
  • 45
    • 45149084413 scopus 로고    scopus 로고
    • Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
    • Guelen L, Pagie L, Brasset E, Meuleman W, Faza MB, Talhout W et al (2008) Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions. Nature 453(7197): 948-951.
    • (2008) Nature , vol.453 , Issue.7197 , pp. 948-951
    • Guelen, L.1    Pagie, L.2    Brasset, E.3    Meuleman, W.4    Faza, M.B.5    Talhout, W.6
  • 46
    • 0038740693 scopus 로고    scopus 로고
    • Tails of intrigue: Phosphorylation of RNA polymerase II mediates histone methylation
    • Hampsey M, Reinberg D (2003) Tails of intrigue: phosphorylation of RNA polymerase II mediates histone methylation. Cell 113(4): 429-432.
    • (2003) Cell , vol.113 , Issue.4 , pp. 429-432
    • Hampsey, M.1    Reinberg, D.2
  • 47
    • 0034713275 scopus 로고    scopus 로고
    • CTCF mediates methylation-sensitive enhancer-blocking activity at the H19/Igf2 locus
    • Hark AT, Schoenherr CJ, Katz DJ, Ingram RS, Levorse JM, Tilghman SM (2000) CTCF mediates methylation-sensitive enhancer-blocking activity at the H19/Igf2 locus. Nature 405(6785): 486-489.
    • (2000) Nature , vol.405 , Issue.6785 , pp. 486-489
    • Hark, A.T.1    Schoenherr, C.J.2    Katz, D.J.3    Ingram, R.S.4    Levorse, J.M.5    Tilghman, S.M.6
  • 48
    • 0036847620 scopus 로고    scopus 로고
    • Function and selectivity of bromodomains in anchoring chromatin-modifying complexes to promoter nucleosomes
    • Hassan AH, Prochasson P, Neely KE, Galasinski SC, Chandy M, Carrozza MJ et al (2002) Function and selectivity of bromodomains in anchoring chromatin-modifying complexes to promoter nucleosomes. Cell 111(3): 369-379.
    • (2002) Cell , vol.111 , Issue.3 , pp. 369-379
    • Hassan, A.H.1    Prochasson, P.2    Neely, K.E.3    Galasinski, S.C.4    Chandy, M.5    Carrozza, M.J.6
  • 50
    • 0024003456 scopus 로고
    • A direct link between core histone acetylation and transcriptionally active chromatin
    • Hebbes TR, Thorne AW, Crane-Robinson C (1988) A direct link between core histone acetylation and transcriptionally active chromatin. EMBO J 7(5): 1395-1402.
    • (1988) EMBO J , vol.7 , Issue.5 , pp. 1395-1402
    • Hebbes, T.R.1    Thorne, A.W.2    Crane-Robinson, C.3
  • 51
    • 33847334699 scopus 로고    scopus 로고
    • Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
    • Heintzman ND, Stuart RK, Hon G, Fu Y, Ching CW, Hawkins RD et al (2007) Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat Genet 39(3): 311-318.
    • (2007) Nat Genet , vol.39 , Issue.3 , pp. 311-318
    • Heintzman, N.D.1    Stuart, R.K.2    Hon, G.3    Fu, Y.4    Ching, C.W.5    Hawkins, R.D.6
  • 53
    • 0037406067 scopus 로고    scopus 로고
    • The methyl-CpG binding domain and the evolving role of DNA methylation in animals
    • Hendrich B, Tweedie S (2003) The methyl-CpG binding domain and the evolving role of DNA methylation in animals. Trends Genet (TIG) 19(5): 269-277.
    • (2003) Trends Genet (TIG) , vol.19 , Issue.5 , pp. 269-277
    • Hendrich, B.1    Tweedie, S.2
  • 54
    • 0033575886 scopus 로고    scopus 로고
    • The thymine glycosylase MBD4 can bind to the product of deamination at methylated CpG sites
    • Hendrich B, Hardeland U, Ng HH, Jiricny J, Bird A (1999) The thymine glycosylase MBD4 can bind to the product of deamination at methylated CpG sites. Nature 401(6750): 301-304.
    • (1999) Nature , vol.401 , Issue.6750 , pp. 301-304
    • Hendrich, B.1    Hardeland, U.2    Ng, H.H.3    Jiricny, J.4    Bird, A.5
  • 55
    • 73449113904 scopus 로고    scopus 로고
    • Dnmt3/transcription factor interactions as crucial players in targeted DNA methylation
    • Hervouet E, Vallette FM, Cartron PF (2009) Dnmt3/transcription factor interactions as crucial players in targeted DNA methylation. Epigenet Off J DNA Methyl Soc 4(7): 487-499.
    • (2009) Epigenet Off J DNA Methyl Soc , vol.4 , Issue.7 , pp. 487-499
    • Hervouet, E.1    Vallette, F.M.2    Cartron, P.F.3
  • 56
    • 9244252580 scopus 로고    scopus 로고
    • Methylated lysine 79 of histone H3 targets 53BP1 to DNA double-strand breaks
    • Huyen Y, Zgheib O, Ditullio RA Jr, Gorgoulis VG, Zacharatos P, Petty TJ et al (2004) Methylated lysine 79 of histone H3 targets 53BP1 to DNA double-strand breaks. Nature 432(7015): 406-411.
    • (2004) Nature , vol.432 , Issue.7015 , pp. 406-411
    • Huyen, Y.1    Zgheib, O.2    Ditullio, R.A.3    Gorgoulis, V.G.4    Zacharatos, P.5    Petty, T.J.6
  • 57
    • 60049097838 scopus 로고    scopus 로고
    • Kaiso is a bimodal modulator for Wnt/beta-catenin signaling
    • Iioka H, Doerner SK, Tamai K (2009) Kaiso is a bimodal modulator for Wnt/beta-catenin signaling. FEBS Lett 583(4): 627-632.
    • (2009) FEBS Lett , vol.583 , Issue.4 , pp. 627-632
    • Iioka, H.1    Doerner, S.K.2    Tamai, K.3
  • 58
    • 38949212693 scopus 로고    scopus 로고
    • A novel CpG island set identifies tissue-specific methylation at developmental gene loci
    • Illingworth R, Kerr A, Desousa D, Jorgensen H, Ellis P, Stalker J et al (2008) A novel CpG island set identifies tissue-specific methylation at developmental gene loci. PLoS Biol 6(1): e22.
    • (2008) PLoS Biol , vol.6 , Issue.1
    • Illingworth, R.1    Kerr, A.2    Desousa, D.3    Jorgensen, H.4    Ellis, P.5    Stalker, J.6
  • 59
    • 79952763586 scopus 로고    scopus 로고
    • Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine
    • Iqbal K, Jin SG, Pfeifer GP, Szabo PE (2011) Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine. Proc Natl Acad Sci USA 108(9): 3642-3647.
    • (2011) Proc Natl Acad Sci USA , vol.108 , Issue.9 , pp. 3642-3647
    • Iqbal, K.1    Jin, S.G.2    Pfeifer, G.P.3    Szabo, P.E.4
  • 60
    • 0034015438 scopus 로고    scopus 로고
    • CpG-island methylation in aging and cancer
    • Issa JP (2000) CpG-island methylation in aging and cancer. Curr Top Microbiol Immunol 249: 101-118.
    • (2000) Curr Top Microbiol Immunol , vol.249 , pp. 101-118
    • Issa, J.P.1
  • 61
    • 33847219608 scopus 로고    scopus 로고
    • Knockdown of ALR (MLL2) reveals ALR target genes and leads to alterations in cell adhesion and growth
    • Issaeva I, Zonis Y, Rozovskaia T, Orlovsky K, Croce CM, Nakamura T et al (2007) Knockdown of ALR (MLL2) reveals ALR target genes and leads to alterations in cell adhesion and growth. Mol Cell Biol 27(5): 1889-1903.
    • (2007) Mol Cell Biol , vol.27 , Issue.5 , pp. 1889-1903
    • Issaeva, I.1    Zonis, Y.2    Rozovskaia, T.3    Orlovsky, K.4    Croce, C.M.5    Nakamura, T.6
  • 62
    • 77956189495 scopus 로고    scopus 로고
    • Role of tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification
    • Ito S, D'Alessio AC, Taranova OV, Hong K, Sowers LC, Zhang Y (2010) Role of tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification. Nature 466(7310): 1129-1133.
    • (2010) Nature , vol.466 , Issue.7310 , pp. 1129-1133
    • Ito, S.1    D'Alessio, A.C.2    Taranova, O.V.3    Hong, K.4    Sowers, L.C.5    Zhang, Y.6
  • 63
    • 33947302685 scopus 로고    scopus 로고
    • The X-linked mental retardation gene SMCX/JARID1C defines a family of histone H3 lysine 4 demethylases
    • Iwase S, Lan F, Bayliss P, de la Torre-Ubieta L, Huarte M, Qi HH et al (2007) The X-linked mental retardation gene SMCX/JARID1C defines a family of histone H3 lysine 4 demethylases. Cell 128(6): 1077-1088.
    • (2007) Cell , vol.128 , Issue.6 , pp. 1077-1088
    • Iwase, S.1    Lan, F.2    Bayliss, P.3    de la Torre-Ubieta, L.4    Huarte, M.5    Qi, H.H.6
  • 64
    • 0034717183 scopus 로고    scopus 로고
    • Structure and function of a human TAFII250 double bromodomain module
    • Jacobson RH, Ladurner AG, King DS, Tjian R (2000) Structure and function of a human TAFII250 double bromodomain module. Science (New York, NY) 288(5470): 1422-1425.
    • (2000) Science (New York, NY) , vol.288 , Issue.5470 , pp. 1422-1425
    • Jacobson, R.H.1    Ladurner, A.G.2    King, D.S.3    Tjian, R.4
  • 66
    • 0035371872 scopus 로고    scopus 로고
    • Re-SET-ting heterochromatin by histone methyltransferases
    • Jenuwein T (2001) Re-SET-ting heterochromatin by histone methyltransferases. Trends Cell Biol 11(6): 266-273.
    • (2001) Trends Cell Biol , vol.11 , Issue.6 , pp. 266-273
    • Jenuwein, T.1
  • 67
    • 0035839136 scopus 로고    scopus 로고
    • Translating the histone code
    • Jenuwein T, Allis CD (2001) Translating the histone code. Science (New York, NY) 293(5532): 1074-1080.
    • (2001) Science (New York, NY) , vol.293 , Issue.5532 , pp. 1074-1080
    • Jenuwein, T.1    Allis, C.D.2
  • 69
    • 1842505317 scopus 로고    scopus 로고
    • Mbd1 is recruited to both methylated and nonmethylated CpGs via distinct DNA binding domains
    • Jorgensen HF, Ben-Porath I, Bird AP (2004) Mbd1 is recruited to both methylated and nonmethylated CpGs via distinct DNA binding domains. Mol Cell Biol 24(8): 3387-3395.
    • (2004) Mol Cell Biol , vol.24 , Issue.8 , pp. 3387-3395
    • Jorgensen, H.F.1    Ben-Porath, I.2    Bird, A.P.3
  • 70
    • 29144468972 scopus 로고    scopus 로고
    • Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation
    • Joshi AA, Struhl K (2005) Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation. Mol Cell 20(6): 971-978.
    • (2005) Mol Cell , vol.20 , Issue.6 , pp. 971-978
    • Joshi, A.A.1    Struhl, K.2
  • 71
    • 73049131457 scopus 로고
    • Enzymatic synthesis of deoxyribonucleic acid. VIII. Frequencies of nearest neighbor base sequences in deoxyribonucleic acid
    • Josse J, Kaiser AD, Kornberg A (1961) Enzymatic synthesis of deoxyribonucleic acid. VIII. Frequencies of nearest neighbor base sequences in deoxyribonucleic acid. J Biol Chem 236: 864-875.
    • (1961) J Biol Chem , vol.236 , pp. 864-875
    • Josse, J.1    Kaiser, A.D.2    Kornberg, A.3
  • 72
    • 72849140654 scopus 로고    scopus 로고
    • Chromatin mechanisms in genomic imprinting
    • Kacem S, Feil R (2009) Chromatin mechanisms in genomic imprinting. Mamm Genome Off J Int Mamm Genome Soc 20(9-10): 544-556.
    • (2009) Mamm Genome Off J Int Mamm Genome Soc , vol.20 , Issue.9-10 , pp. 544-556
    • Kacem, S.1    Feil, R.2
  • 73
    • 0034644120 scopus 로고    scopus 로고
    • Functional association of CTCF with the insulator upstream of the H19 gene is parent of origin-specific and methylationsensitive
    • Kanduri C, Pant V, Loukinov D, Pugacheva E, Qi CF, Wolffe A et al (2000) Functional association of CTCF with the insulator upstream of the H19 gene is parent of origin-specific and methylationsensitive. Curr Biol (CB) 10(14): 853-856.
    • (2000) Curr Biol (CB) , vol.10 , Issue.14 , pp. 853-856
    • Kanduri, C.1    Pant, V.2    Loukinov, D.3    Pugacheva, E.4    Qi, C.F.5    Wolffe, A.6
  • 75
    • 77954817543 scopus 로고    scopus 로고
    • Chromatin as a potential carrier of heritable information
    • Kaufman PD, Rando OJ (2010) Chromatin as a potential carrier of heritable information. Curr Opin Cell Biol 22(3): 284-290.
    • (2010) Curr Opin Cell Biol , vol.22 , Issue.3 , pp. 284-290
    • Kaufman, P.D.1    Rando, O.J.2
  • 76
    • 0141557763 scopus 로고    scopus 로고
    • Bur1 kinase is required for efficient transcription elongation by RNA polymerase II
    • Keogh MC, Podolny V, Buratowski S (2003) Bur1 kinase is required for efficient transcription elongation by RNA polymerase II. Mol Cell Biol 23(19): 7005-7018.
    • (2003) Mol Cell Biol , vol.23 , Issue.19 , pp. 7005-7018
    • Keogh, M.C.1    Podolny, V.2    Buratowski, S.3
  • 77
    • 27744587302 scopus 로고    scopus 로고
    • Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex
    • Keogh MC, Kurdistani SK, Morris SA, Ahn SH, Podolny V, Collins SR et al (2005) Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex. Cell 123(4): 593-605.
    • (2005) Cell , vol.123 , Issue.4 , pp. 593-605
    • Keogh, M.C.1    Kurdistani, S.K.2    Morris, S.A.3    Ahn, S.H.4    Podolny, V.5    Collins, S.R.6
  • 78
    • 66249121737 scopus 로고    scopus 로고
    • AEBP2 as a potential targeting protein for polycomb repression complex PRC2
    • Kim H, Kang K, Kim J (2009a) AEBP2 as a potential targeting protein for polycomb repression complex PRC2. Nucleic Acids Res 37(9): 2940-2950.
    • (2009) Nucleic Acids Res , vol.37 , Issue.9 , pp. 2940-2950
    • Kim, H.1    Kang, K.2    Kim, J.3
  • 79
    • 65249105512 scopus 로고    scopus 로고
    • RAD6-mediated transcription-coupled H2B ubiquitylation directly stimulates H3K4 methylation in human cells
    • Kim J, Guermah M, McGinty RK, Lee JS, Tang Z, Milne TA et al (2009b) RAD6-mediated transcription-coupled H2B ubiquitylation directly stimulates H3K4 methylation in human cells. Cell 137(3): 459-471.
    • (2009) Cell , vol.137 , Issue.3 , pp. 459-471
    • Kim, J.1    Guermah, M.2    McGinty, R.K.3    Lee, J.S.4    Tang, Z.5    Milne, T.A.6
  • 80
    • 32344450824 scopus 로고    scopus 로고
    • Genomic DNA methylation: The mark and its mediators
    • Klose RJ, Bird AP (2006) Genomic DNA methylation: the mark and its mediators. Trends Biochem Sci 31(2): 89-97.
    • (2006) Trends Biochem Sci , vol.31 , Issue.2 , pp. 89-97
    • Klose, R.J.1    Bird, A.P.2
  • 81
    • 33745847680 scopus 로고    scopus 로고
    • The transcriptional repressor JHDM3A demethylates trimethyl histone H3 lysine 9 and lysine 36
    • Klose RJ, Yamane K, Bae Y, Zhang D, Erdjument-Bromage H, Tempst P et al (2006) The transcriptional repressor JHDM3A demethylates trimethyl histone H3 lysine 9 and lysine 36. Nature 442(7100): 312-316.
    • (2006) Nature , vol.442 , Issue.7100 , pp. 312-316
    • Klose, R.J.1    Yamane, K.2    Bae, Y.3    Zhang, D.4    Erdjument-Bromage, H.5    Tempst, P.6
  • 83
    • 79551587102 scopus 로고    scopus 로고
    • Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells
    • Koh KP, Yabuuchi A, Rao S, Huang Y, Cunniff K, Nardone J et al (2011) Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells. Cell Stem Cell 8(2): 200-213.
    • (2011) Cell Stem Cell , vol.8 , Issue.2 , pp. 200-213
    • Koh, K.P.1    Yabuuchi, A.2    Rao, S.3    Huang, Y.4    Cunniff, K.5    Nardone, J.6
  • 84
  • 85
    • 33847076849 scopus 로고    scopus 로고
    • Chromatin modifications and their function
    • Kouzarides T (2007) Chromatin modifications and their function. Cell 128(4): 693-705.
    • (2007) Cell , vol.128 , Issue.4 , pp. 693-705
    • Kouzarides, T.1
  • 86
    • 39549083972 scopus 로고    scopus 로고
    • Chromatin modifications and their mechanisms of action
    • Allis CD, Jenuwein T, Reinberg D (eds), Cold Spring Harbor Laboratory Press, Plainview
    • Kouzarides T, Berger S (2007) Chromatin modifications and their mechanisms of action. In: Allis CD, Jenuwein T, Reinberg D (eds) Epigenetics. Cold Spring Harbor Laboratory Press, Plainview, pp 191-206.
    • (2007) Epigenetics , pp. 191-206
    • Kouzarides, T.1    Berger, S.2
  • 87
    • 66149123748 scopus 로고    scopus 로고
    • The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain
    • Kriaucionis S, Heintz N (2009) The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain. Science (New York, NY) 324(5929): 929-930.
    • (2009) Science (New York, NY) , vol.324 , Issue.5929 , pp. 929-930
    • Kriaucionis, S.1    Heintz, N.2
  • 88
    • 0037979272 scopus 로고    scopus 로고
    • Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II
    • Krogan NJ, Kim M, Tong A, Golshani A, Cagney G, Canadien V et al (2003) Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II. Mol Cell Biol 23(12): 4207-4218.
    • (2003) Mol Cell Biol , vol.23 , Issue.12 , pp. 4207-4218
    • Krogan, N.J.1    Kim, M.2    Tong, A.3    Golshani, A.4    Cagney, G.5    Canadien, V.6
  • 89
    • 51149107006 scopus 로고    scopus 로고
    • Regulation of muscle development by DPF3, a novel histone acetylation and methylation reader of the BAF chromatin remodeling complex
    • Lange M, Kaynak B, Forster UB, Tonjes M, Fischer JJ, Grimm C et al (2008) Regulation of muscle development by DPF3, a novel histone acetylation and methylation reader of the BAF chromatin remodeling complex. Genes Dev 22(17): 2370-2384.
    • (2008) Genes Dev , vol.22 , Issue.17 , pp. 2370-2384
    • Lange, M.1    Kaynak, B.2    Forster, U.B.3    Tonjes, M.4    Fischer, J.J.5    Grimm, C.6
  • 90
    • 0035425099 scopus 로고    scopus 로고
    • The S. cerevisiae SAGA complex functions in vivo as a coactivator for transcriptional activation by Gal4
    • Larschan E, Winston F (2001) The S. cerevisiae SAGA complex functions in vivo as a coactivator for transcriptional activation by Gal4. Genes Dev 15(15): 1946-1956.
    • (2001) Genes Dev , vol.15 , Issue.15 , pp. 1946-1956
    • Larschan, E.1    Winston, F.2
  • 91
    • 0026742792 scopus 로고
    • CpG islands as gene markers in the human genome
    • Larsen F, Gundersen G, Lopez R, Prydz H (1992) CpG islands as gene markers in the human genome. Genomics 13(4): 1095-1107.
    • (1992) Genomics , vol.13 , Issue.4 , pp. 1095-1107
    • Larsen, F.1    Gundersen, G.2    Lopez, R.3    Prydz, H.4
  • 92
    • 25144519737 scopus 로고    scopus 로고
    • An essential role for CoREST in nucleosomal histone 3 lysine 4 demethylation
    • Lee MG, Wynder C, Cooch N, Shiekhattar R (2005) An essential role for CoREST in nucleosomal histone 3 lysine 4 demethylation. Nature 437(7057): 432-435.
    • (2005) Nature , vol.437 , Issue.7057 , pp. 432-435
    • Lee, M.G.1    Wynder, C.2    Cooch, N.3    Shiekhattar, R.4
  • 93
    • 36849046285 scopus 로고    scopus 로고
    • Histone crosstalk between H2B monoubiquitination and H3 methylation mediated by COMPASS
    • Lee JS, Shukla A, Schneider J, Swanson SK, Washburn MP, Florens L et al (2007a) Histone crosstalk between H2B monoubiquitination and H3 methylation mediated by COMPASS. Cell 131(6): 1084-1096.
    • (2007) Cell , vol.131 , Issue.6 , pp. 1084-1096
    • Lee, J.S.1    Shukla, A.2    Schneider, J.3    Swanson, S.K.4    Washburn, M.P.5    Florens, L.6
  • 94
    • 33847383585 scopus 로고    scopus 로고
    • Physical and functional association of a trimethyl H3K4 demethylase and Ring6a/MBLR, a polycomb-like protein
    • Lee MG, Norman J, Shilatifard A, Shiekhattar R (2007b) Physical and functional association of a trimethyl H3K4 demethylase and Ring6a/MBLR, a polycomb-like protein. Cell 128(5): 877-887.
    • (2007) Cell , vol.128 , Issue.5 , pp. 877-887
    • Lee, M.G.1    Norman, J.2    Shilatifard, A.3    Shiekhattar, R.4
  • 95
    • 77955330698 scopus 로고    scopus 로고
    • Presence of 5-methylcytosine in CpNpG trinucleotides in the human genome
    • Lee J, Jang SJ, Benoit N, Hoque MO, Califano JA, Trink B et al (2010) Presence of 5-methylcytosine in CpNpG trinucleotides in the human genome. Genomics 96(2): 67-72.
    • (2010) Genomics , vol.96 , Issue.2 , pp. 67-72
    • Lee, J.1    Jang, S.J.2    Benoit, N.3    Hoque, M.O.4    Califano, J.A.5    Trink, B.6
  • 96
    • 84864129535 scopus 로고    scopus 로고
    • Distribution of 5-hydroxymethylcytosine in different human tissues
    • Li W, Liu M (2011) Distribution of 5-hydroxymethylcytosine in different human tissues. J Nucleic Acids 2011: 870726.
    • (2011) J Nucleic Acids , vol.2011
    • Li, W.1    Liu, M.2
  • 97
    • 0037512273 scopus 로고    scopus 로고
    • The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II
    • Li B, Howe L, Anderson S, Yates JR 3rd, Workman JL (2003) The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II. J Biol Chem 278(11): 8897-8903.
    • (2003) J Biol Chem , vol.278 , Issue.11 , pp. 8897-8903
    • Li, B.1    Howe, L.2    Anderson, S.3    Yates, J.R.4    Workman, J.L.5
  • 98
    • 33847070442 scopus 로고    scopus 로고
    • The role of chromatin during transcription
    • Li B, Carey M, Workman JL (2007a) The role of chromatin during transcription. Cell 128(4): 707-719.
    • (2007) Cell , vol.128 , Issue.4 , pp. 707-719
    • Li, B.1    Carey, M.2    Workman, J.L.3
  • 99
    • 34249099730 scopus 로고    scopus 로고
    • Combined action of PHD and chromo domains directs the Rpd3S HDAC to transcribed chromatin
    • Li B, Gogol M, Carey M, Lee D, Seidel C, Workman JL (2007b) Combined action of PHD and chromo domains directs the Rpd3S HDAC to transcribed chromatin. Science (New York, NY) 316(5827): 1050-1054.
    • (2007) Science (New York, NY) , vol.316 , Issue.5827 , pp. 1050-1054
    • Li, B.1    Gogol, M.2    Carey, M.3    Lee, D.4    Seidel, C.5    Workman, J.L.6
  • 100
    • 70450217879 scopus 로고    scopus 로고
    • Human DNA methylomes at base resolution show widespread epigenomic differences
    • Lister R, Pelizzola M, Dowen RH, Hawkins RD, Hon G, Tonti-Filippini J et al (2009) Human DNA methylomes at base resolution show widespread epigenomic differences. Nature 462(7271): 315-322.
    • (2009) Nature , vol.462 , Issue.7271 , pp. 315-322
    • Lister, R.1    Pelizzola, M.2    Dowen, R.H.3    Hawkins, R.D.4    Hon, G.5    Tonti-Filippini, J.6
  • 101
    • 0038820074 scopus 로고    scopus 로고
    • c-myc transformation domain recruits the human STAGA complex and requires TRRAP and GCN5 acetylase activity for transcription activation
    • Liu X, Tesfai J, Evrard YA, Dent SY, Martinez E (2003) c-myc transformation domain recruits the human STAGA complex and requires TRRAP and GCN5 acetylase activity for transcription activation. J Biol Chem 278(22): 20405-20412.
    • (2003) J Biol Chem , vol.278 , Issue.22 , pp. 20405-20412
    • Liu, X.1    Tesfai, J.2    Evrard, Y.A.3    Dent, S.Y.4    Martinez, E.5
  • 102
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2. 8 A resolution
    • Luger K, Mader AW, Richmond RK, Sargent DF, Richmond TJ (1997) Crystal structure of the nucleosome core particle at 2. 8 A resolution. Nature 389(6648): 251-260.
    • (1997) Nature , vol.389 , Issue.6648 , pp. 251-260
    • Luger, K.1    Mader, A.W.2    Richmond, R.K.3    Sargent, D.F.4    Richmond, T.J.5
  • 103
    • 78751662908 scopus 로고    scopus 로고
    • The polycomb complex PRC2 and its mark in life
    • Margueron R, Reinberg D (2011) The polycomb complex PRC2 and its mark in life. Nature 469(7330): 343-349.
    • (2011) Nature , vol.469 , Issue.7330 , pp. 343-349
    • Margueron, R.1    Reinberg, D.2
  • 104
    • 70349952171 scopus 로고    scopus 로고
    • Role of the polycomb protein EED in the propagation of repressive histone marks
    • Margueron R, Justin N, Ohno K, Sharpe ML, Son J, Drury WJ 3rd et al (2009) Role of the polycomb protein EED in the propagation of repressive histone marks. Nature 461(7265): 762-767.
    • (2009) Nature , vol.461 , Issue.7265 , pp. 762-767
    • Margueron, R.1    Justin, N.2    Ohno, K.3    Sharpe, M.L.4    Son, J.5    Drury, W.J.6
  • 105
    • 27644589675 scopus 로고    scopus 로고
    • The diverse functions of histone lysine methylation
    • Martin C, Zhang Y (2005) The diverse functions of histone lysine methylation. Nat Rev Mol Cell Biol 6(11): 838-849.
    • (2005) Nat Rev Mol Cell Biol , vol.6 , Issue.11 , pp. 838-849
    • Martin, C.1    Zhang, Y.2
  • 106
    • 0032508406 scopus 로고    scopus 로고
    • A human SPT3-TAFII31-GCN5-L acetylase complex distinct from transcription factor IID
    • Martinez E, Kundu TK, Fu J, Roeder RG (1998) A human SPT3-TAFII31-GCN5-L acetylase complex distinct from transcription factor IID. J Biol Chem 273(37): 23781-23785.
    • (1998) J Biol Chem , vol.273 , Issue.37 , pp. 23781-23785
    • Martinez, E.1    Kundu, T.K.2    Fu, J.3    Roeder, R.G.4
  • 107
    • 40249085830 scopus 로고    scopus 로고
    • Regulation of an inducible promoter by an HP1beta-HP1gamma switch
    • Mateescu B, Bourachot B, Rachez C, Ogryzko V, Muchardt C (2008) Regulation of an inducible promoter by an HP1beta-HP1gamma switch. EMBO Rep 9(3): 267-272.
    • (2008) EMBO Rep , vol.9 , Issue.3 , pp. 267-272
    • Mateescu, B.1    Bourachot, B.2    Rachez, C.3    Ogryzko, V.4    Muchardt, C.5
  • 108
    • 0033970431 scopus 로고    scopus 로고
    • The essential cofactor TRRAP recruits the histone acetyltransferase hGCN5 to c-myc
    • McMahon SB, Wood MA, Cole MD (2000) The essential cofactor TRRAP recruits the histone acetyltransferase hGCN5 to c-myc. Mol Cell Biol 20(2): 556-562.
    • (2000) Mol Cell Biol , vol.20 , Issue.2 , pp. 556-562
    • McMahon, S.B.1    Wood, M.A.2    Cole, M.D.3
  • 109
    • 24144462170 scopus 로고    scopus 로고
    • LSD1 demethylates repressive histone marks to promote androgen-receptor-dependent transcription
    • Metzger E, Wissmann M, Yin N, Muller JM, Schneider R, Peters AH et al (2005) LSD1 demethylates repressive histone marks to promote androgen-receptor-dependent transcription. Nature 437(7057): 436-439.
    • (2005) Nature , vol.437 , Issue.7057 , pp. 436-439
    • Metzger, E.1    Wissmann, M.2    Yin, N.3    Muller, J.M.4    Schneider, R.5    Peters, A.H.6
  • 110
    • 58149345088 scopus 로고    scopus 로고
    • Lymphocytes from patients with type 1 diabetes display a distinct profile of chromatin histone H3 lysine 9 dimethylation: An epigenetic study in diabetes
    • Miao F, Smith DD, Zhang L, Min A, Feng W, Natarajan R (2008) Lymphocytes from patients with type 1 diabetes display a distinct profile of chromatin histone H3 lysine 9 dimethylation: an epigenetic study in diabetes. Diabetes 57(12): 3189-3198.
    • (2008) Diabetes , vol.57 , Issue.12 , pp. 3189-3198
    • Miao, F.1    Smith, D.D.2    Zhang, L.3    Min, A.4    Feng, W.5    Natarajan, R.6
  • 111
    • 34547624303 scopus 로고    scopus 로고
    • Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
    • Mikkelsen TS, Ku M, Jaffe DB, Issac B, Lieberman E, Giannoukos G et al (2007) Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 448(7153): 553-560.
    • (2007) Nature , vol.448 , Issue.7153 , pp. 553-560
    • Mikkelsen, T.S.1    Ku, M.2    Jaffe, D.B.3    Issac, B.4    Lieberman, E.5    Giannoukos, G.6
  • 112
    • 34547864553 scopus 로고    scopus 로고
    • Distinct GCN5/PCAF-containing complexes function as co-activators and are involved in transcription factor and global histone acetylation
    • Nagy Z, Tora L (2007) Distinct GCN5/PCAF-containing complexes function as co-activators and are involved in transcription factor and global histone acetylation. Oncogene 26(37): 5341-5357.
    • (2007) Oncogene , vol.26 , Issue.37 , pp. 5341-5357
    • Nagy, Z.1    Tora, L.2
  • 113
    • 0032574977 scopus 로고    scopus 로고
    • Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex
    • Nan X, Ng HH, Johnson CA, Laherty CD, Turner BM, Eisenman RN et al (1998) Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex. Nature 393(6683): 386-389.
    • (1998) Nature , vol.393 , Issue.6683 , pp. 386-389
    • Nan, X.1    Ng, H.H.2    Johnson, C.A.3    Laherty, C.D.4    Turner, B.M.5    Eisenman, R.N.6
  • 114
    • 34648834735 scopus 로고    scopus 로고
    • Pcl-PRC2 is needed to generate high levels of H3-K27 trimethylation at polycomb target genes
    • Nekrasov M, Klymenko T, Fraterman S, Papp B, Oktaba K, Kocher T et al (2007) Pcl-PRC2 is needed to generate high levels of H3-K27 trimethylation at polycomb target genes. EMBO J 26(18): 4078-4088.
    • (2007) EMBO J , vol.26 , Issue.18 , pp. 4078-4088
    • Nekrasov, M.1    Klymenko, T.2    Fraterman, S.3    Papp, B.4    Oktaba, K.5    Kocher, T.6
  • 115
    • 0344022572 scopus 로고    scopus 로고
    • Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity
    • Ng HH, Robert F, Young RA, Struhl K (2003) Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity. Mol Cell 11(3): 709-719.
    • (2003) Mol Cell , vol.11 , Issue.3 , pp. 709-719
    • Ng, H.H.1    Robert, F.2    Young, R.A.3    Struhl, K.4
  • 117
    • 17444375685 scopus 로고    scopus 로고
    • hDOT1L links histone methylation to leukemogenesis
    • Okada Y, Feng Q, Lin Y, Jiang Q, Li Y, Coffield VM et al (2005) hDOT1L links histone methylation to leukemogenesis. Cell 121(2): 167-178.
    • (2005) Cell , vol.121 , Issue.2 , pp. 167-178
    • Okada, Y.1    Feng, Q.2    Lin, Y.3    Jiang, Q.4    Li, Y.5    Coffield, V.M.6
  • 118
    • 0033615717 scopus 로고    scopus 로고
    • DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development
    • Okano M, Bell DW, Haber DA, Li E (1999) DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development. Cell 99(3): 247-257.
    • (1999) Cell , vol.99 , Issue.3 , pp. 247-257
    • Okano, M.1    Bell, D.W.2    Haber, D.A.3    Li, E.4
  • 119
    • 77956058729 scopus 로고    scopus 로고
    • Epigenetics and cardiovascular disease
    • Ordovas JM, Smith CE (2010) Epigenetics and cardiovascular disease. Nat Rev Cardiol 7(9): 510-519.
    • (2010) Nat Rev Cardiol , vol.7 , Issue.9 , pp. 510-519
    • Ordovas, J.M.1    Smith, C.E.2
  • 120
    • 33751090746 scopus 로고    scopus 로고
    • Phosphorylation and functions of the RNA polymerase II CTD
    • Phatnani HP, Greenleaf AL (2006) Phosphorylation and functions of the RNA polymerase II CTD. Genes Dev 20(21): 2922-2936.
    • (2006) Genes Dev , vol.20 , Issue.21 , pp. 2922-2936
    • Phatnani, H.P.1    Greenleaf, A.L.2
  • 121
    • 23944462969 scopus 로고    scopus 로고
    • Genome-wide map of nucleosome acetylation and methylation in yeast
    • Pokholok DK, Harbison CT, Levine S, Cole M, Hannett NM, Lee TI et al (2005) Genome-wide map of nucleosome acetylation and methylation in yeast. Cell 122(4): 517-527.
    • (2005) Cell , vol.122 , Issue.4 , pp. 517-527
    • Pokholok, D.K.1    Harbison, C.T.2    Levine, S.3    Cole, M.4    Hannett, N.M.5    Lee, T.I.6
  • 122
    • 77957970301 scopus 로고    scopus 로고
    • Epigenetic modifications and human disease
    • Portela A, Esteller M (2010) Epigenetic modifications and human disease. Nat Biotechnol 28(10): 1057-1068.
    • (2010) Nat Biotechnol , vol.28 , Issue.10 , pp. 1057-1068
    • Portela, A.1    Esteller, M.2
  • 123
    • 13444267442 scopus 로고    scopus 로고
    • Chd1 chromodomain links histone H3 methylation with SAGA-and SLIK-dependent acetylation
    • Pray-Grant MG, Daniel JA, Schieltz D, Yates JR 3rd, Grant PA (2005) Chd1 chromodomain links histone H3 methylation with SAGA-and SLIK-dependent acetylation. Nature 433(7024): 434-438.
    • (2005) Nature , vol.433 , Issue.7024 , pp. 434-438
    • Pray-Grant, M.G.1    Daniel, J.A.2    Schieltz, D.3    Yates, J.R.4    Grant, P.A.5
  • 124
  • 125
    • 62549104640 scopus 로고    scopus 로고
    • Phosphorylation of the Pol II CTD by KIN28 enhances BUR1/BUR2 recruitment and Ser2 CTD phosphorylation near promoters
    • Qiu H, Hu C, Hinnebusch AG (2009) Phosphorylation of the Pol II CTD by KIN28 enhances BUR1/BUR2 recruitment and Ser2 CTD phosphorylation near promoters. Mol Cell 33(6): 752-762.
    • (2009) Mol Cell , vol.33 , Issue.6 , pp. 752-762
    • Qiu, H.1    Hu, C.2    Hinnebusch, A.G.3
  • 126
    • 1842650055 scopus 로고    scopus 로고
    • CTCF elements direct allele-specific undermethylation at the imprinted H19 locus
    • Rand E, Ben-Porath I, Keshet I, Cedar H (2004) CTCF elements direct allele-specific undermethylation at the imprinted H19 locus. Curr Biol (CB) 14(11): 1007-1012.
    • (2004) Curr Biol (CB) , vol.14 , Issue.11 , pp. 1007-1012
    • Rand, E.1    Ben-Porath, I.2    Keshet, I.3    Cedar, H.4
  • 127
    • 26444507919 scopus 로고    scopus 로고
    • Targets of the Gal4 transcription activator in functional transcription complexes
    • Reeves WM, Hahn S (2005) Targets of the Gal4 transcription activator in functional transcription complexes. Mol Cell Biol 25(20): 9092-9102.
    • (2005) Mol Cell Biol , vol.25 , Issue.20 , pp. 9092-9102
    • Reeves, W.M.1    Hahn, S.2
  • 128
    • 17744391429 scopus 로고    scopus 로고
    • Co-evolution of X-chromosome inactivation and imprinting in mammals
    • Reik W, Lewis A (2005) Co-evolution of X-chromosome inactivation and imprinting in mammals. Nat Rev Genet 6(5): 403-410.
    • (2005) Nat Rev Genet , vol.6 , Issue.5 , pp. 403-410
    • Reik, W.1    Lewis, A.2
  • 129
    • 0347955358 scopus 로고    scopus 로고
    • Histone methyltransferases direct different degrees of methylation to define distinct chromatin domains
    • Rice JC, Briggs SD, Ueberheide B, Barber CM, Shabanowitz J, Hunt DF et al (2003) Histone methyltransferases direct different degrees of methylation to define distinct chromatin domains. Mol Cell 12(6): 1591-1598.
    • (2003) Mol Cell , vol.12 , Issue.6 , pp. 1591-1598
    • Rice, J.C.1    Briggs, S.D.2    Ueberheide, B.3    Barber, C.M.4    Shabanowitz, J.5    Hunt, D.F.6
  • 130
    • 34250729138 scopus 로고    scopus 로고
    • Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
    • Rinn JL, Kertesz M, Wang JK, Squazzo SL, Xu X, Brugmann SA et al (2007) Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell 129(7): 1311-1323.
    • (2007) Cell , vol.129 , Issue.7 , pp. 1311-1323
    • Rinn, J.L.1    Kertesz, M.2    Wang, J.K.3    Squazzo, S.L.4    Xu, X.5    Brugmann, S.A.6
  • 134
    • 31944432339 scopus 로고    scopus 로고
    • A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters
    • Saxonov S, Berg P, Brutlag DL (2006) A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters. Proc Natl Acad Sci USA 103(5): 1412-1417.
    • (2006) Proc Natl Acad Sci USA , vol.103 , Issue.5 , pp. 1412-1417
    • Saxonov, S.1    Berg, P.2    Brutlag, D.L.3
  • 135
    • 0014083515 scopus 로고
    • The heterogeneity of thymine methyl group origin in DNA pyrimidine isostichs of developing sea urchin embryos
    • Scarano E, Iaccarino M, Grippo P, Parisi E (1967) The heterogeneity of thymine methyl group origin in DNA pyrimidine isostichs of developing sea urchin embryos. Proc Natl Acad Sci USA 57(5): 1394-1400.
    • (1967) Proc Natl Acad Sci USA , vol.57 , Issue.5 , pp. 1394-1400
    • Scarano, E.1    Iaccarino, M.2    Grippo, P.3    Parisi, E.4
  • 136
    • 2642542643 scopus 로고    scopus 로고
    • A silencing pathway to induce H3-K9 and H4-K20 trimethylation at constitutive heterochromatin
    • Schotta G, Lachner M, Sarma K, Ebert A, Sengupta R, Reuter G et al (2004) A silencing pathway to induce H3-K9 and H4-K20 trimethylation at constitutive heterochromatin. Genes Dev 18(11): 1251-1262.
    • (2004) Genes Dev , vol.18 , Issue.11 , pp. 1251-1262
    • Schotta, G.1    Lachner, M.2    Sarma, K.3    Ebert, A.4    Sengupta, R.5    Reuter, G.6
  • 137
    • 33846025127 scopus 로고    scopus 로고
    • Dynamic regulation of histone lysine methylation by demethylases
    • Shi Y, Whetstine JR (2007) Dynamic regulation of histone lysine methylation by demethylases. Mol Cell 25(1): 1-14.
    • (2007) Mol Cell , vol.25 , Issue.1 , pp. 1-14
    • Shi, Y.1    Whetstine, J.R.2
  • 138
    • 11144332565 scopus 로고    scopus 로고
    • Histone demethylation mediated by the nuclear amine oxidase homolog LSD1
    • Shi Y, Lan F, Matson C, Mulligan P, Whetstine JR, Cole PA et al (2004) Histone demethylation mediated by the nuclear amine oxidase homolog LSD1. Cell 119(7): 941-953.
    • (2004) Cell , vol.119 , Issue.7 , pp. 941-953
    • Shi, Y.1    Lan, F.2    Matson, C.3    Mulligan, P.4    Whetstine, J.R.5    Cole, P.A.6
  • 139
    • 24944535335 scopus 로고    scopus 로고
    • Regulation of LSD1 histone demethylase activity by its associated factors
    • Shi YJ, Matson C, Lan F, Iwase S, Baba T, Shi Y (2005) Regulation of LSD1 histone demethylase activity by its associated factors. Mol Cell 19(6): 857-864.
    • (2005) Mol Cell , vol.19 , Issue.6 , pp. 857-864
    • Shi, Y.J.1    Matson, C.2    Lan, F.3    Iwase, S.4    Baba, T.5    Shi, Y.6
  • 140
    • 33745868054 scopus 로고    scopus 로고
    • ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression
    • Shi X, Hong T, Walter KL, Ewalt M, Michishita E, Hung T et al (2006) ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression. Nature 442(7098): 96-99.
    • (2006) Nature , vol.442 , Issue.7098 , pp. 96-99
    • Shi, X.1    Hong, T.2    Walter, K.L.3    Ewalt, M.4    Michishita, E.5    Hung, T.6
  • 141
    • 0344824404 scopus 로고    scopus 로고
    • Histone sumoylation is associated with transcriptional repression
    • Shiio Y, Eisenman RN (2003) Histone sumoylation is associated with transcriptional repression. Proc Natl Acad Sci USA 100(23): 13225-13230.
    • (2003) Proc Natl Acad Sci USA , vol.100 , Issue.23 , pp. 13225-13230
    • Shiio, Y.1    Eisenman, R.N.2
  • 143
    • 0345698603 scopus 로고    scopus 로고
    • Chromatin remodeling protein Chd1 interacts with transcription elongation factors and localizes to transcribed genes
    • Simic R, Lindstrom DL, Tran HG, Roinick KL, Costa PJ, Johnson AD et al (2003) Chromatin remodeling protein Chd1 interacts with transcription elongation factors and localizes to transcribed genes. EMBO J 22(8): 1846-1856.
    • (2003) EMBO J , vol.22 , Issue.8 , pp. 1846-1856
    • Simic, R.1    Lindstrom, D.L.2    Tran, H.G.3    Roinick, K.L.4    Costa, P.J.5    Johnson, A.D.6
  • 144
    • 70349469565 scopus 로고    scopus 로고
    • Mechanisms of polycomb gene silencing: Knowns and unknowns
    • Simon JA, Kingston RE (2009) Mechanisms of polycomb gene silencing: knowns and unknowns. Nat Rev Mol Cell Biol 10(10): 697-708.
    • (2009) Nat Rev Mol Cell Biol , vol.10 , Issue.10 , pp. 697-708
    • Simon, J.A.1    Kingston, R.E.2
  • 145
    • 0034051227 scopus 로고    scopus 로고
    • Acetylation of histones and transcription-related factors
    • Sterner DE, Berger SL (2000) Acetylation of histones and transcription-related factors. Microbiol Mol Biol Rev (MMBR) 64(2): 435-459.
    • (2000) Microbiol Mol Biol Rev (MMBR) , vol.64 , Issue.2 , pp. 435-459
    • Sterner, D.E.1    Berger, S.L.2
  • 146
    • 0034610814 scopus 로고    scopus 로고
    • The language of covalent histone modifications
    • Strahl BD, Allis CD (2000) The language of covalent histone modifications. Nature 403(6765): 41-45.
    • (2000) Nature , vol.403 , Issue.6765 , pp. 41-45
    • Strahl, B.D.1    Allis, C.D.2
  • 148
    • 0000899674 scopus 로고
    • Enzymatic synthesis of deoxyribonucleic acid. XI. Further studies on nearest neighbor base sequences in deoxyribonucleic acids
    • Swartz MN, Trautner TA, Kornberg A (1962) Enzymatic synthesis of deoxyribonucleic acid. XI. Further studies on nearest neighbor base sequences in deoxyribonucleic acids. J Biol Chem 237: 1961-1967.
    • (1962) J Biol Chem , vol.237 , pp. 1961-1967
    • Swartz, M.N.1    Trautner, T.A.2    Kornberg, A.3
  • 149
    • 0034193691 scopus 로고    scopus 로고
    • Maternal-specific footprints at putative CTCF sites in the H19 imprinting control region give evidence for insulator function
    • Szabo P, Tang SH, Rentsendorj A, Pfeifer GP, Mann JR (2000) Maternal-specific footprints at putative CTCF sites in the H19 imprinting control region give evidence for insulator function. Curr Biol (CB) 10(10): 607-610.
    • (2000) Curr Biol (CB) , vol.10 , Issue.10 , pp. 607-610
    • Szabo, P.1    Tang, S.H.2    Rentsendorj, A.3    Pfeifer, G.P.4    Mann, J.R.5
  • 150
    • 66149146320 scopus 로고    scopus 로고
    • Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
    • Tahiliani M, Koh KP, Shen Y, Pastor WA, Bandukwala H, Brudno Y et al (2009) Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science (New York, NY) 324(5929): 930-935.
    • (2009) Science (New York, NY) , vol.324 , Issue.5929 , pp. 930-935
    • Tahiliani, M.1    Koh, K.P.2    Shen, Y.3    Pastor, W.A.4    Bandukwala, H.5    Brudno, Y.6
  • 151
    • 0037133565 scopus 로고    scopus 로고
    • Comprehensive analysis of CpG islands in human chromosomes 21 and 22
    • Takai D, Jones PA (2002) Comprehensive analysis of CpG islands in human chromosomes 21 and 22. Proc Natl Acad Sci USA 99(6): 3740-3745.
    • (2002) Proc Natl Acad Sci USA , vol.99 , Issue.6 , pp. 3740-3745
    • Takai, D.1    Jones, P.A.2
  • 153
    • 0026566417 scopus 로고
    • Histone H4 isoforms acetylated at specific lysine residues define individual chromosomes and chromatin domains in drosophila polytene nuclei
    • Turner BM, Birley AJ, Lavender J (1992) Histone H4 isoforms acetylated at specific lysine residues define individual chromosomes and chromatin domains in drosophila polytene nuclei. Cell 69(2): 375-384.
    • (1992) Cell , vol.69 , Issue.2 , pp. 375-384
    • Turner, B.M.1    Birley, A.J.2    Lavender, J.3
  • 154
    • 23044431656 scopus 로고    scopus 로고
    • Histone H3 lysine 9 methylation and HP1gamma are associated with transcription elongation through mammalian chromatin
    • Vakoc CR, Mandat SA, Olenchock BA, Blobel GA (2005) Histone H3 lysine 9 methylation and HP1gamma are associated with transcription elongation through mammalian chromatin. Mol Cell 19(3): 381-391.
    • (2005) Mol Cell , vol.19 , Issue.3 , pp. 381-391
    • Vakoc, C.R.1    Mandat, S.A.2    Olenchock, B.A.3    Blobel, G.A.4
  • 155
    • 33845451555 scopus 로고    scopus 로고
    • Profile of histone lysine methylation across transcribed mammalian chromatin
    • Vakoc CR, Sachdeva MM, Wang H, Blobel GA (2006) Profile of histone lysine methylation across transcribed mammalian chromatin. Mol Cell Biol 26(24): 9185-9195.
    • (2006) Mol Cell Biol , vol.26 , Issue.24 , pp. 9185-9195
    • Vakoc, C.R.1    Sachdeva, M.M.2    Wang, H.3    Blobel, G.A.4
  • 156
    • 33847055935 scopus 로고    scopus 로고
    • Endogenous cytosine damage products alter the site selectivity of human DNA maintenance methyltransferase DNMT1
    • Valinluck V, Sowers LC (2007) Endogenous cytosine damage products alter the site selectivity of human DNA maintenance methyltransferase DNMT1. Cancer Res 67(3): 946-950.
    • (2007) Cancer Res , vol.67 , Issue.3 , pp. 946-950
    • Valinluck, V.1    Sowers, L.C.2
  • 157
    • 4043112183 scopus 로고    scopus 로고
    • Oxidative damage to methyl-CpG sequences inhibits the binding of the methyl-CpG binding domain (MBD) of methyl-CpG binding protein 2 (MeCP2)
    • Valinluck V, Tsai HH, Rogstad DK, Burdzy A, Bird A, Sowers LC (2004) Oxidative damage to methyl-CpG sequences inhibits the binding of the methyl-CpG binding domain (MBD) of methyl-CpG binding protein 2 (MeCP2). Nucleic Acids Res 32(14): 4100-4108.
    • (2004) Nucleic Acids Res , vol.32 , Issue.14 , pp. 4100-4108
    • Valinluck, V.1    Tsai, H.H.2    Rogstad, D.K.3    Burdzy, A.4    Bird, A.5    Sowers, L.C.6
  • 158
    • 0037077178 scopus 로고    scopus 로고
    • Dot1p modulates silencing in yeast by methylation of the nucleosome core
    • van Leeuwen F, Gafken PR, Gottschling DE (2002) Dot1p modulates silencing in yeast by methylation of the nucleosome core. Cell 109(6): 745-756.
    • (2002) Cell , vol.109 , Issue.6 , pp. 745-756
    • van Leeuwen, F.1    Gafken, P.R.2    Gottschling, D.E.3
  • 159
    • 0029985730 scopus 로고    scopus 로고
    • Acetylation of histone H4 plays a primary role in enhancing transcription factor binding to nucleosomal DNA in vitro
    • Vettese-Dadey M, Grant PA, Hebbes TR, Crane-Robinson C, Allis CD, Workman JL (1996) Acetylation of histone H4 plays a primary role in enhancing transcription factor binding to nucleosomal DNA in vitro. EMBO J 15(10): 2508-2518.
    • (1996) EMBO J , vol.15 , Issue.10 , pp. 2508-2518
    • Vettese-Dadey, M.1    Grant, P.A.2    Hebbes, T.R.3    Crane-Robinson, C.4    Allis, C.D.5    Workman, J.L.6
  • 161
    • 79551594322 scopus 로고    scopus 로고
    • An epigenetic tet a tet with pluripotency
    • Walter J (2011) An epigenetic tet a tet with pluripotency. Cell Stem Cell 8(2): 121-122.
    • (2011) Cell Stem Cell , vol.8 , Issue.2 , pp. 121-122
    • Walter, J.1
  • 162
    • 9244265488 scopus 로고    scopus 로고
    • A novel human homologue of drosophila polycomblike gene is up-regulated in multiple cancers
    • Wang S, Robertson GP, Zhu J (2004a) A novel human homologue of drosophila polycomblike gene is up-regulated in multiple cancers. Gene 343(1): 69-78.
    • (2004) Gene , vol.343 , Issue.1 , pp. 69-78
    • Wang, S.1    Robertson, G.P.2    Zhu, J.3
  • 163
  • 164
    • 27744560484 scopus 로고    scopus 로고
    • DNA methyltransferase-3a interacts with p53 and represses p53-mediated gene expression
    • Wang YA, Kamarova Y, Shen KC, Jiang Z, Hahn MJ, Wang Y et al (2005) DNA methyltransferase-3a interacts with p53 and represses p53-mediated gene expression. Cancer Biol Ther 4(10): 1138-1143.
    • (2005) Cancer Biol Ther , vol.4 , Issue.10 , pp. 1138-1143
    • Wang, Y.A.1    Kamarova, Y.2    Shen, K.C.3    Jiang, Z.4    Hahn, M.J.5    Wang, Y.6
  • 165
    • 46249112085 scopus 로고    scopus 로고
    • Combinatorial patterns of histone acetylations and methylations in the human genome
    • Wang Z, Zang C, Rosenfeld JA, Schones DE, Barski A, Cuddapah S et al (2008) Combinatorial patterns of histone acetylations and methylations in the human genome. Nat Genet 40(7): 897-903.
    • (2008) Nat Genet , vol.40 , Issue.7 , pp. 897-903
    • Wang, Z.1    Zang, C.2    Rosenfeld, J.A.3    Schones, D.E.4    Barski, A.5    Cuddapah, S.6
  • 166
    • 68749108259 scopus 로고    scopus 로고
    • LSD1 is a subunit of the NuRD complex and targets the metastasis programs in breast cancer
    • Wang Y, Zhang H, Chen Y, Sun Y, Yang F, Yu W et al (2009) LSD1 is a subunit of the NuRD complex and targets the metastasis programs in breast cancer. Cell 138(4): 660-672.
    • (2009) Cell , vol.138 , Issue.4 , pp. 660-672
    • Wang, Y.1    Zhang, H.2    Chen, Y.3    Sun, Y.4    Yang, F.5    Yu, W.6
  • 167
    • 0019248608 scopus 로고
    • Modified bases in bacteriophage DNAs
    • Warren RA (1980) Modified bases in bacteriophage DNAs. Annu Rev Microbiol 34: 137-158.
    • (1980) Annu Rev Microbiol , vol.34 , pp. 137-158
    • Warren, R.A.1
  • 168
    • 23044514626 scopus 로고    scopus 로고
    • Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
    • Weber M, Davies JJ, Wittig D, Oakeley EJ, Haase M, Lam WL et al (2005) Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells. Nat Genet 37(8): 853-862.
    • (2005) Nat Genet , vol.37 , Issue.8 , pp. 853-862
    • Weber, M.1    Davies, J.J.2    Wittig, D.3    Oakeley, E.J.4    Haase, M.5    Lam, W.L.6
  • 169
    • 33646124469 scopus 로고    scopus 로고
    • Reversal of histone lysine trimethylation by the JMJD2 family of histone demethylases
    • Whetstine JR, Nottke A, Lan F, Huarte M, Smolikov S, Chen Z et al (2006) Reversal of histone lysine trimethylation by the JMJD2 family of histone demethylases. Cell 125(3): 467-481.
    • (2006) Cell , vol.125 , Issue.3 , pp. 467-481
    • Whetstine, J.R.1    Nottke, A.2    Lan, F.3    Huarte, M.4    Smolikov, S.5    Chen, Z.6
  • 170
    • 0042818412 scopus 로고    scopus 로고
    • The Paf1 complex is essential for histone monoubiquitination by the Rad6-Bre1 complex, which signals for histone methylation by COMPASS and Dot1p
    • Wood A, Schneider J, Dover J, Johnston M, Shilatifard A (2003) The Paf1 complex is essential for histone monoubiquitination by the Rad6-Bre1 complex, which signals for histone methylation by COMPASS and Dot1p. J Biol Chem 278(37): 34739-34742.
    • (2003) J Biol Chem , vol.278 , Issue.37 , pp. 34739-34742
    • Wood, A.1    Schneider, J.2    Dover, J.3    Johnston, M.4    Shilatifard, A.5
  • 171
    • 0031707751 scopus 로고    scopus 로고
    • Alteration of nucleosome structure as a mechanism of transcriptional regulation
    • Workman JL, Kingston RE (1998) Alteration of nucleosome structure as a mechanism of transcriptional regulation. Annu Rev Biochem 67: 545-579.
    • (1998) Annu Rev Biochem , vol.67 , pp. 545-579
    • Workman, J.L.1    Kingston, R.E.2
  • 173
    • 34250317798 scopus 로고
    • A new pyrimidine base from bacteriophage nucleic acids
    • Wyatt GR, Cohen SS (1952) A new pyrimidine base from bacteriophage nucleic acids. Nature 170(4338): 1072-1073.
    • (1952) Nature , vol.170 , Issue.4338 , pp. 1072-1073
    • Wyatt, G.R.1    Cohen, S.S.2
  • 174
    • 20444417108 scopus 로고    scopus 로고
    • WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development
    • Wysocka J, Swigut T, Milne TA, Dou Y, Zhang X, Burlingame AL et al (2005) WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development. Cell 121(6): 859-872.
    • (2005) Cell , vol.121 , Issue.6 , pp. 859-872
    • Wysocka, J.1    Swigut, T.2    Milne, T.A.3    Dou, Y.4    Zhang, X.5    Burlingame, A.L.6
  • 175
    • 0037336041 scopus 로고    scopus 로고
    • Phosphorylation of RNA polymerase II CTD regulates H3 methylation in yeast
    • Xiao T, Hall H, Kizer KO, Shibata Y, Hall MC, Borchers CH et al (2003) Phosphorylation of RNA polymerase II CTD regulates H3 methylation in yeast. Genes Dev 17(5): 654-663.
    • (2003) Genes Dev , vol.17 , Issue.5 , pp. 654-663
    • Xiao, T.1    Hall, H.2    Kizer, K.O.3    Shibata, Y.4    Hall, M.C.5    Borchers, C.H.6
  • 176
    • 33646138230 scopus 로고    scopus 로고
    • JHDM2A, a JmjC-containing H3K9 demethylase, facilitates transcription activation by androgen receptor
    • Yamane K, Toumazou C, Tsukada Y, Erdjument-Bromage H, Tempst P, Wong J et al (2006) JHDM2A, a JmjC-containing H3K9 demethylase, facilitates transcription activation by androgen receptor. Cell 125(3): 483-495.
    • (2006) Cell , vol.125 , Issue.3 , pp. 483-495
    • Yamane, K.1    Toumazou, C.2    Tsukada, Y.3    Erdjument-Bromage, H.4    Tempst, P.5    Wong, J.6
  • 177
    • 33947244845 scopus 로고    scopus 로고
    • PLU-1 is an H3K4 demethylase involved in transcriptional repression and breast cancer cell proliferation
    • Yamane K, Tateishi K, Klose RJ, Fang J, Fabrizio LA, Erdjument-Bromage H et al (2007) PLU-1 is an H3K4 demethylase involved in transcriptional repression and breast cancer cell proliferation. Mol Cell 25(6): 801-812.
    • (2007) Mol Cell , vol.25 , Issue.6 , pp. 801-812
    • Yamane, K.1    Tateishi, K.2    Klose, R.J.3    Fang, J.4    Fabrizio, L.A.5    Erdjument-Bromage, H.6
  • 178
    • 34547924046 scopus 로고    scopus 로고
    • HATs and HDACs: From structure, function and regulation to novel strategies for therapy and prevention
    • Yang XJ, Seto E (2007) HATs and HDACs: from structure, function and regulation to novel strategies for therapy and prevention. Oncogene 26(37): 5310-5318.
    • (2007) Oncogene , vol.26 , Issue.37 , pp. 5310-5318
    • Yang, X.J.1    Seto, E.2
  • 179
    • 39749127166 scopus 로고    scopus 로고
    • The Rpd3/Hda1 family of lysine deacetylases: From bacteria and yeast to mice and men
    • Yang XJ, Seto E (2008) The Rpd3/Hda1 family of lysine deacetylases: from bacteria and yeast to mice and men. Nat Rev Mol Cell Biol 9(3): 206-218.
    • (2008) Nat Rev Mol Cell Biol , vol.9 , Issue.3 , pp. 206-218
    • Yang, X.J.1    Seto, E.2
  • 180
    • 78650233514 scopus 로고    scopus 로고
    • TDRD3 is an effector molecule for arginine-methylated histone marks
    • Yang Y, Lu Y, Espejo A, Wu J, Xu W, Liang S et al (2010) TDRD3 is an effector molecule for arginine-methylated histone marks. Mol Cell 40(6): 1016-1023.
    • (2010) Mol Cell , vol.40 , Issue.6 , pp. 1016-1023
    • Yang, Y.1    Lu, Y.2    Espejo, A.3    Wu, J.4    Xu, W.5    Liang, S.6
  • 181
    • 0031964577 scopus 로고    scopus 로고
    • A candidate mammalian DNA methyltransferase related to pmt1p offission yeast
    • Yoder JA, Bestor TH (1998) A candidate mammalian DNA methyltransferase related to pmt1p offission yeast. Hum Mol Genet 7(2): 279-284.
    • (1998) Hum Mol Genet , vol.7 , Issue.2 , pp. 279-284
    • Yoder, J.A.1    Bestor, T.H.2
  • 182
    • 77954487796 scopus 로고    scopus 로고
    • Mechanism and regulation of acetylated histone binding by the tandem PHDfinger of DPF3b
    • Zeng L, Zhang Q, Li S, Plotnikov AN, Walsh MJ, Zhou MM (2010) Mechanism and regulation of acetylated histone binding by the tandem PHDfinger of DPF3b. Nature 466(7303): 258-262.
    • (2010) Nature , vol.466 , Issue.7303 , pp. 258-262
    • Zeng, L.1    Zhang, Q.2    Li, S.3    Plotnikov, A.N.4    Walsh, M.J.5    Zhou, M.M.6
  • 183
    • 0035883954 scopus 로고    scopus 로고
    • Transcription regulation by histone methylation: Interplay between different covalent modifications of the core histone tails
    • Zhang Y, Reinberg D (2001) Transcription regulation by histone methylation: interplay between different covalent modifications of the core histone tails. Genes Dev 15(18): 2343-2360.
    • (2001) Genes Dev , vol.15 , Issue.18 , pp. 2343-2360
    • Zhang, Y.1    Reinberg, D.2
  • 184
    • 33748629119 scopus 로고    scopus 로고
    • Genome-wide highresolution mapping and functional analysis of DNA methylation in arabidopsis
    • Zhang X, Yazaki J, Sundaresan A, Cokus S, Chan SW, Chen H et al (2006) Genome-wide highresolution mapping and functional analysis of DNA methylation in arabidopsis. Cell 126(6): 1189-1201.
    • (2006) Cell , vol.126 , Issue.6 , pp. 1189-1201
    • Zhang, X.1    Yazaki, J.2    Sundaresan, A.3    Cokus, S.4    Chan, S.W.5    Chen, H.6
  • 185
    • 55349109963 scopus 로고    scopus 로고
    • Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome
    • Zhao J, Sun BK, Erwin JA, Song JJ, Lee JT (2008) Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome. Science (New York, NY) 322(5902): 750-756.
    • (2008) Science (New York, NY) , vol.322 , Issue.5902 , pp. 750-756
    • Zhao, J.1    Sun, B.K.2    Erwin, J.A.3    Song, J.J.4    Lee, J.T.5
  • 186
    • 62049086288 scopus 로고    scopus 로고
    • PRMT5-mediated methylation of histone H4R3 recruits DNMT3A, coupling histone and DNA methylation in gene silencing
    • Zhao Q, Rank G, Tan YT, Li H, Moritz RL, Simpson RJ et al (2009) PRMT5-mediated methylation of histone H4R3 recruits DNMT3A, coupling histone and DNA methylation in gene silencing. Nat Struct Mol Biol 16(3): 304-311.
    • (2009) Nat Struct Mol Biol , vol.16 , Issue.3 , pp. 304-311
    • Zhao, Q.1    Rank, G.2    Tan, Y.T.3    Li, H.4    Moritz, R.L.5    Simpson, R.J.6
  • 187
    • 77954371390 scopus 로고    scopus 로고
    • Novel trans-tail regulation of H2B ubiquitylation and H3K4 methylation by the N terminus of histone H2A
    • Zheng S, Wyrick JJ, Reese JC (2010) Novel trans-tail regulation of H2B ubiquitylation and H3K4 methylation by the N terminus of histone H2A. Mol Cell Biol 30(14): 3635-3645.
    • (2010) Mol Cell Biol , vol.30 , Issue.14 , pp. 3635-3645
    • Zheng, S.1    Wyrick, J.J.2    Reese, J.C.3
  • 188
    • 27944454433 scopus 로고    scopus 로고
    • Monoubiquitination of human histone H2B: The factors involved and their roles in HOX gene regulation
    • Zhu B, Zheng Y, Pham AD, Mandal SS, Erdjument-Bromage H, Tempst P et al (2005) Monoubiquitination of human histone H2B: the factors involved and their roles in HOX gene regulation. Mol Cell 20(4): 601-611.
    • (2005) Mol Cell , vol.20 , Issue.4 , pp. 601-611
    • Zhu, B.1    Zheng, Y.2    Pham, A.D.3    Mandal, S.S.4    Erdjument-Bromage, H.5    Tempst, P.6
  • 189
    • 0028110129 scopus 로고
    • The BTB domain, found primarily in zincfinger proteins, defines an evolutionarily conserved family that includes several developmentally regulated genes in drosophila
    • Zollman S, Godt D, Prive GG, Couderc JL, Laski FA (1994) The BTB domain, found primarily in zincfinger proteins, defines an evolutionarily conserved family that includes several developmentally regulated genes in drosophila. Proc Natl Acad Sci USA 91(22): 10717-10721.
    • (1994) Proc Natl Acad Sci USA , vol.91 , Issue.22 , pp. 10717-10721
    • Zollman, S.1    Godt, D.2    Prive, G.G.3    Couderc, J.L.4    Laski, F.A.5


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