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Volumn 453, Issue 7197, 2008, Pages 948-951

Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN CTCF; ZINC FINGER PROTEIN;

EID: 45149084413     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature06947     Document Type: Article
Times cited : (1461)

References (35)
  • 1
    • 33847077659 scopus 로고    scopus 로고
    • Beyond the sequence: Cellular organization of genome function
    • Misteli, T. Beyond the sequence: cellular organization of genome function. Cell 128, 787-800 (2007).
    • (2007) Cell , vol.128 , pp. 787-800
    • Misteli, T.1
  • 2
    • 34250777112 scopus 로고    scopus 로고
    • The nuclear envelope and transcriptional control
    • Akhtar, A. & Gasser, S. M. The nuclear envelope and transcriptional control. Nature Rev. Genet. 8, 507-517 (2007).
    • (2007) Nature Rev. Genet , vol.8 , pp. 507-517
    • Akhtar, A.1    Gasser, S.M.2
  • 3
    • 10944252995 scopus 로고    scopus 로고
    • The function of nuclear architecture: A genetic approach
    • Taddei, A., Hediger, F., Neumann, F. R. & Gasser, S. M. The function of nuclear architecture: a genetic approach. Annu. Rev. Genet. 38, 305-345 (2004).
    • (2004) Annu. Rev. Genet , vol.38 , pp. 305-345
    • Taddei, A.1    Hediger, F.2    Neumann, F.R.3    Gasser, S.M.4
  • 4
    • 33748289518 scopus 로고    scopus 로고
    • Characterization of the Drosophila melanogaster genome at the nuclear lamina
    • Pickersgill, H. et al. Characterization of the Drosophila melanogaster genome at the nuclear lamina. Nature Genet. 38, 1005-1014 (2006).
    • (2006) Nature Genet , vol.38 , pp. 1005-1014
    • Pickersgill, H.1
  • 5
    • 34250791291 scopus 로고    scopus 로고
    • Detection of in vivo protein-DNA interactions using DamID in mammalian cells
    • Vogel, M. J., Peric-Hupkes, D. & van Steensel, B. Detection of in vivo protein-DNA interactions using DamID in mammalian cells. Nature Protocols 2, 1467-1478 (2007).
    • (2007) Nature Protocols , vol.2 , pp. 1467-1478
    • Vogel, M.J.1    Peric-Hupkes, D.2    van Steensel, B.3
  • 6
    • 0010397284 scopus 로고    scopus 로고
    • The Emery-Dreifuss muscular dystrophy protein, emerin, is a nuclear membrane protein
    • Manilal, S., Nguyen, T. M., Sewry, C. A. & Morris, G. E. The Emery-Dreifuss muscular dystrophy protein, emerin, is a nuclear membrane protein. Hum. Mol. Genet. 5, 801-808 (1996).
    • (1996) Hum. Mol. Genet , vol.5 , pp. 801-808
    • Manilal, S.1    Nguyen, T.M.2    Sewry, C.A.3    Morris, G.E.4
  • 7
    • 1542382269 scopus 로고    scopus 로고
    • Multiple and surprising new functions for emerin, a nuclear membrane protein
    • Bengtsson, L. & Wilson, K. L. Multiple and surprising new functions for emerin, a nuclear membrane protein. Curr. Opin. Cell Biol. 16, 73-79 (2004).
    • (2004) Curr. Opin. Cell Biol , vol.16 , pp. 73-79
    • Bengtsson, L.1    Wilson, K.L.2
  • 8
    • 21844444077 scopus 로고    scopus 로고
    • Three-dimensional maps of all chromosomes in human male fibroblast nuclei and prometaphase rosettes
    • Bolzer, A. et al. Three-dimensional maps of all chromosomes in human male fibroblast nuclei and prometaphase rosettes. PLoS Biol. 3, e157 (2005).
    • (2005) PLoS Biol , vol.3
    • Bolzer, A.1
  • 9
    • 0033553877 scopus 로고    scopus 로고
    • Differences in the localization and morphology of chromosomes in the human nucleus
    • Croft, J. A. et al. Differences in the localization and morphology of chromosomes in the human nucleus. J. Cell Biol. 145, 1119-1131 (1999).
    • (1999) J. Cell Biol , vol.145 , pp. 1119-1131
    • Croft, J.A.1
  • 10
    • 34250172721 scopus 로고    scopus 로고
    • The three-dimensional structure of human interphase chromosomes is related to the transcriptome map
    • Goetze, S. et al. The three-dimensional structure of human interphase chromosomes is related to the transcriptome map. Mol. Cell. Biol. 27, 4475-4487 (2007).
    • (2007) Mol. Cell. Biol , vol.27 , pp. 4475-4487
    • Goetze, S.1
  • 11
    • 3242757522 scopus 로고    scopus 로고
    • Nuclear organization of centromeric domains is not perturbed by inhibition of histone deacetylases
    • Gilchrist, S., Gilbert, N., Perry, P. & Bickmore, W. A. Nuclear organization of centromeric domains is not perturbed by inhibition of histone deacetylases. Chromosome Res. 12, 505-516 (2004).
    • (2004) Chromosome Res , vol.12 , pp. 505-516
    • Gilchrist, S.1    Gilbert, N.2    Perry, P.3    Bickmore, W.A.4
  • 12
    • 26244454608 scopus 로고    scopus 로고
    • Distinctive nuclear organisation of centromeres and regions involved in pluripotency in human embryonic stem cells
    • Wiblin, A. E., Cui, W., Clark, A. J. & Bickmore, W. A. Distinctive nuclear organisation of centromeres and regions involved in pluripotency in human embryonic stem cells. J. Cell Sci. 118, 3861-3868 (2005).
    • (2005) J. Cell Sci , vol.118 , pp. 3861-3868
    • Wiblin, A.E.1    Cui, W.2    Clark, A.J.3    Bickmore, W.A.4
  • 13
    • 0035253606 scopus 로고    scopus 로고
    • The spatial organization of human chromosomes within the nuclei of normal and emerin-mutant cells
    • Boyle, S. et al. The spatial organization of human chromosomes within the nuclei of normal and emerin-mutant cells. Hum. Mol. Genet. 10, 211-219 (2001).
    • (2001) Hum. Mol. Genet , vol.10 , pp. 211-219
    • Boyle, S.1
  • 14
    • 27344433991 scopus 로고    scopus 로고
    • Local gene density predicts the spatial position of genetic loci in the interphase nucleus
    • Murmann, A. E. et al. Local gene density predicts the spatial position of genetic loci in the interphase nucleus. Exp. Cell Res. 311, 14-26 (2005).
    • (2005) Exp. Cell Res , vol.311 , pp. 14-26
    • Murmann, A.E.1
  • 15
    • 12744261452 scopus 로고    scopus 로고
    • Evolution and functional classification of vertebrate gene deserts
    • Ovcharenko, I. et al. Evolution and functional classification of vertebrate gene deserts. Genome Res. 15, 137-145 (2005).
    • (2005) Genome Res , vol.15 , pp. 137-145
    • Ovcharenko, I.1
  • 16
    • 33846283384 scopus 로고    scopus 로고
    • Dynamic genome architecture in the nuclear space: Regulation of gene expression in three dimensions
    • Lanctot, C. et al. Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions. Nature Rev. Genet. 8, 104-115 (2007).
    • (2007) Nature Rev. Genet , vol.8 , pp. 104-115
    • Lanctot, C.1
  • 17
    • 34249299791 scopus 로고    scopus 로고
    • The complex language of chromatin regulation during transcription
    • Berger, S. L. The complex language of chromatin regulation during transcription. Nature 447, 407-412 (2007).
    • (2007) Nature , vol.447 , pp. 407-412
    • Berger, S.L.1
  • 18
    • 33646870495 scopus 로고    scopus 로고
    • Genome-wide mapping of Polycomb target genes unravels their roles in cell fate transitions
    • Bracken, A. P. et al. Genome-wide mapping of Polycomb target genes unravels their roles in cell fate transitions. Genes Dev. 20, 1123-1136 (2006).
    • (2006) Genes Dev , vol.20 , pp. 1123-1136
    • Bracken, A.P.1
  • 19
    • 33947201809 scopus 로고    scopus 로고
    • Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome
    • Kim, T. H. et al. Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome. Cell 128, 1231-1245 (2007).
    • (2007) Cell , vol.128 , pp. 1231-1245
    • Kim, T.H.1
  • 20
    • 33747453473 scopus 로고    scopus 로고
    • Insulators: Exploiting transcriptional and epigenetic mechanisms
    • Gaszner, M. & Felsenfeld, G. Insulators: exploiting transcriptional and epigenetic mechanisms. Nature Rev. Genet. 7, 703-713 (2006).
    • (2006) Nature Rev. Genet , vol.7 , pp. 703-713
    • Gaszner, M.1    Felsenfeld, G.2
  • 21
    • 0842310349 scopus 로고    scopus 로고
    • CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species
    • Yusufzai, T. M., Tagami, H., Nakatani, Y. & Felsenfeld, G. CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species. Mol. Cell 13, 291-298 (2004).
    • (2004) Mol. Cell , vol.13 , pp. 291-298
    • Yusufzai, T.M.1    Tagami, H.2    Nakatani, Y.3    Felsenfeld, G.4
  • 22
    • 35949000033 scopus 로고    scopus 로고
    • Acomprehensive ChIP-chip analysis of E2F1, E2F4, and E2F6 in normal and tumor cells reveals interchangeable roles of E2F family members
    • Xu, X. et al. Acomprehensive ChIP-chip analysis of E2F1, E2F4, and E2F6 in normal and tumor cells reveals interchangeable roles of E2F family members. Genome Res. 17, 1550-1561 (2007).
    • (2007) Genome Res , vol.17 , pp. 1550-1561
    • Xu, X.1
  • 23
    • 0030681031 scopus 로고    scopus 로고
    • Dissociation of Oct-1 from the nuclear peripheral structure induces the cellular aging-associated collagenase gene expression
    • Imai, S. et al. Dissociation of Oct-1 from the nuclear peripheral structure induces the cellular aging-associated collagenase gene expression. Mol. Biol. Cell 8, 2407-2419 (1997).
    • (1997) Mol. Biol. Cell , vol.8 , pp. 2407-2419
    • Imai, S.1
  • 24
    • 0041346000 scopus 로고    scopus 로고
    • An uncertainty principle in chromosome positioning
    • Parada, L. A., Roix, J. J. & Misteli, T. An uncertainty principle in chromosome positioning. Trends Cell Biol. 13, 393-396 (2003).
    • (2003) Trends Cell Biol , vol.13 , pp. 393-396
    • Parada, L.A.1    Roix, J.J.2    Misteli, T.3
  • 25
    • 0034628607 scopus 로고    scopus 로고
    • Re-modelling of nuclear architecture in quiescent and senescent human fibroblasts
    • Bridger, J. M., Boyle, S., Kill, I. R. & Bickmore, W. A. Re-modelling of nuclear architecture in quiescent and senescent human fibroblasts. Curr. Biol. 10, 149-152 (2000).
    • (2000) Curr. Biol , vol.10 , pp. 149-152
    • Bridger, J.M.1    Boyle, S.2    Kill, I.R.3    Bickmore, W.A.4
  • 26
    • 4544273261 scopus 로고    scopus 로고
    • Localization of 4q35.2 to the nuclear periphery: Is FSHD a nuclear envelope disease?
    • Masny, P. S. et al. Localization of 4q35.2 to the nuclear periphery: is FSHD a nuclear envelope disease? Hum. Mol. Genet. 13, 1857-1871 (2004).
    • (2004) Hum. Mol. Genet , vol.13 , pp. 1857-1871
    • Masny, P.S.1
  • 27
    • 40749122641 scopus 로고    scopus 로고
    • Transcriptional repression mediated by repositioning of genes to the nuclear lamina
    • Reddy, K. L., Zullo, J. M., Bertolino, E. & Singh, H. Transcriptional repression mediated by repositioning of genes to the nuclear lamina. Nature 452, 243-247 (2008).
    • (2008) Nature , vol.452 , pp. 243-247
    • Reddy, K.L.1    Zullo, J.M.2    Bertolino, E.3    Singh, H.4
  • 28
    • 38349043904 scopus 로고    scopus 로고
    • A genetic locus targeted to the nuclear periphery in living cells maintains its transcriptional competence
    • Kumaran, R. I. & Spector, D. L. A genetic locus targeted to the nuclear periphery in living cells maintains its transcriptional competence. J. Cell Biol. 180, 51-65 (2008).
    • (2008) J. Cell Biol , vol.180 , pp. 51-65
    • Kumaran, R.I.1    Spector, D.L.2
  • 29
    • 34047116826 scopus 로고    scopus 로고
    • Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
    • Weber, M. et al. Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome. Nature Genet. 39, 457-466 (2007).
    • (2007) Nature Genet , vol.39 , pp. 457-466
    • Weber, M.1
  • 30
    • 34347353316 scopus 로고    scopus 로고
    • Genome-wide analysis of KAP1 binding suggests autoregulation of KRAB-ZNFs
    • O'Geen, H. et al. Genome-wide analysis of KAP1 binding suggests autoregulation of KRAB-ZNFs. PLoS Genet. 3, e89 (2007).
    • (2007) PLoS Genet , vol.3
    • O'Geen, H.1
  • 31
    • 0036677662 scopus 로고    scopus 로고
    • Computational framework for transcription factor binding site analysis
    • Lenhard, B. & Wasserman, W. W. TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18, 1135-1136 (2002).
    • (2002) Bioinformatics , vol.18 , pp. 1135-1136
    • Lenhard, B.1    Wasserman, W.W.T.2
  • 32
    • 0033976586 scopus 로고    scopus 로고
    • TRANSFAC: An integrated system for gene expression regulation
    • Wingender, E. et al. TRANSFAC: an integrated system for gene expression regulation. Nucleic Acids Res. 28, 316-319 (2000).
    • (2000) Nucleic Acids Res , vol.28 , pp. 316-319
    • Wingender, E.1
  • 33
    • 0029143269 scopus 로고
    • Localization of the glucocorticoid receptor in discrete clusters in the cell nucleus
    • van Steensel, B. et al. Localization of the glucocorticoid receptor in discrete clusters in the cell nucleus. J. Cell Sci. 108, 3003-3011 (1995).
    • (1995) J. Cell Sci , vol.108 , pp. 3003-3011
    • van Steensel, B.1
  • 34
    • 0036349409 scopus 로고    scopus 로고
    • Spatial preservation of nuclear chromatin architecture during three-dimensional fluorescence in situ hybridization (3D-FISH)
    • Solovei, I. et al. Spatial preservation of nuclear chromatin architecture during three-dimensional fluorescence in situ hybridization (3D-FISH). Exp. Cell Res. 276, 10-23 (2002).
    • (2002) Exp. Cell Res , vol.276 , pp. 10-23
    • Solovei, I.1
  • 35
    • 33750212321 scopus 로고    scopus 로고
    • Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C)
    • Simonis, M. et al. Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C). Nature Genet. 38, 1348-1354 (2006).
    • (2006) Nature Genet , vol.38 , pp. 1348-1354
    • Simonis, M.1


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