Histone H3 lysine 9 methylation and HP1γ are associated with transcription elongation through mammalian chromatin

Molecular Cell

Volumn 19, Issue 3, 2005, Pages 381-391

  Vakoc, Christopher R ^a,b   Mandat, Sean A ^a   Olenchock, Benjamin A ^b   Blobel, Gerd A ^a,b  

^a CHILDREN S HOSPITAL OF PHILADELPHIA   (United States)

^b UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HETEROCHROMATIN PROTEIN 1 GAMMA; HISTONE H3; PROTEIN; RNA POLYMERASE II; TRANSCRIPTION ELONGATION FACTOR; UNCLASSIFIED DRUG;

ANIMAL CELL; ARTICLE; CHROMATIN; CONTROLLED STUDY; GENE ACTIVATION; GENE REPRESSION; HETEROCHROMATIN; MAMMAL; MOUSE; NONHUMAN; PROTEIN DOMAIN; RNA METHYLATION; TRANSCRIPTION INITIATION;

ANIMALS; ANION EXCHANGE PROTEIN 1, ERYTHROCYTE; CELL LINE; CELL LINE, TUMOR; CHROMATIN; CHROMATIN IMMUNOPRECIPITATION; CHROMOSOMAL PROTEINS, NON-HISTONE; DICHLORORIBOFURANOSYLBENZIMIDAZOLE; DNA-BINDING PROTEINS; ERYTHROID CELLS; ERYTHROID-SPECIFIC DNA-BINDING FACTORS; GATA2 TRANSCRIPTION FACTOR; GLOBINS; HELA CELLS; HISTONES; HUMANS; INTERLEUKIN-2; KINETICS; LIVER; LYSINE; METHYLATION; MICE; PHOSPHORYLATION; PROTEIN BINDING; PROTEIN ISOFORMS; PROTO-ONCOGENE PROTEINS C-KIT; PROTO-ONCOGENE PROTEINS C-MYC; RNA POLYMERASE II; T-LYMPHOCYTES; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

MAMMALIA;

EID: 23044431656     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molcel.2005.06.011     Document Type: Article

References (51)

1. N.C. Andrews, and D.V. Faller A rapid micropreparation technique for extraction of DNA-binding proteins from limiting numbers of mammalian cells Nucleic Acids Res. 19 1991 2499
2. K. Ayyanathan, M.S. Lechner, P. Bell, G.G. Maul, D.C. Schultz, Y. Yamada, K. Tanaka, K. Torigoe, and F.J. Rauscher 3rd. Regulated recruitment of HP1 to a euchromatic gene induces mitotically heritable, epigenetic gene silencing: a mammalian cell culture model of gene variegation Genes Dev. 17 2003 1855 1869
3. A.J. Bannister, P. Zegerman, J.F. Partridge, E.A. Miska, J.O. Thomas, R.C. Allshire, and T. Kouzarides Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain Nature 410 2001 120 124
4. S.L. Berger Histone modifications in transcriptional regulation Curr. Opin. Genet. Dev. 12 2002 142 148
5. P. Bernard, J.F. Maure, J.F. Partridge, S. Genier, J.P. Javerzat, and R.C. Allshire Requirement of heterochromatin for cohesion at centromeres Science 294 2001 2539 2542
6. B.E. Bernstein, M. Kamal, K. Lindblad-Toh, S. Bekiranov, D.K. Bailey, D.J. Huebert, S. McMahon, E.K. Karlsson, E.J. Kulbokas 3rd, and T.R. Gingeras Genomic maps and comparative analysis of histone modifications in human and mouse Cell 120 2005 169 181
7. S.D. Briggs, M. Bryk, B.D. Strahl, W.L. Cheung, J.K. Davie, S.Y. Dent, F. Winston, and C.D. Allis Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae Genes Dev. 15 2001 3286 3295
8. D.E. Cryderman, S.K. Grade, Y. Li, L. Fanti, S. Pimpinelli, and L.L. Wallrath Role of Drosophila HP1 in euchromatic gene expression Dev. Dyn. 232 2005 767 774
9. K. Ekwall, E.R. Nimmo, J.P. Javerzat, B. Borgstrom, R. Egel, G. Cranston, and R. Allshire Mutations in the fission yeast silencing factors clr4+ and rik1+ disrupt the localisation of the chromo domain protein Swi6p and impair centromere function J. Cell Sci. 109 1996 2637 2648
10. E.C. Forsberg, T.N. Zaboikina, W.K. Versaw, N.G. Ahn, and E.H. Bresnick Enhancement of beta-globin locus control region-mediated transactivation by mitogen-activated protein kinases through stochastic and graded mechanisms Mol. Cell. Biol. 19 1999 5565 5575
11. M. Gerber, and A. Shilatifard Transcriptional elongation by RNA polymerase II and histone methylation J. Biol. Chem. 278 2003 26303 26306
12. N. Gilbert, S. Boyle, H. Sutherland, J. de Las Heras, J. Allan, T. Jenuwein, and W.A. Bickmore Formation of facultative heterochromatin in the absence of HP1 EMBO J. 22 2003 5540 5550
13. J.A. Grass, M.E. Boyer, S. Pal, J. Wu, M.J. Weiss, and E.H. Bresnick GATA-1-dependent transcriptional repression of GATA-2 via disruption of positive autoregulation and domain-wide chromatin remodeling Proc. Natl. Acad. Sci. USA 100 2003 8811 8816
14. S.A. Jacobs, S.D. Taverna, Y. Zhang, S.D. Briggs, J. Li, J.C. Eissenberg, C.D. Allis, and S. Khorasanizadeh Specificity of the HP1 chromo domain for the methylated N-terminus of histone H3 EMBO J. 20 2001 5232 5241
15. T.C. James, J.C. Eissenberg, C. Craig, V. Dietrich, A. Hobson, and S.C. Elgin Distribution patterns of HP1, a heterochromatin-associated nonhistone chromosomal protein of Drosophila Eur. J. Cell Biol. 50 1989 170 180
16. T. Jenuwein, and C.D. Allis Translating the histone code Science 293 2001 1074 1080
17. J.C. Jones, H.P. Phatnani, T.A. Haystead, J.A. MacDonald, S.M. Alam, and A.L. Greenleaf C-terminal repeat domain kinase I phosphorylates Ser2 and Ser5 of RNA polymerase II C-terminal domain repeats J. Biol. Chem. 279 2004 24957 24964
18. R. Kellum HP1 complexes and heterochromatin assembly Curr. Top. Microbiol. Immunol. 274 2003 53 77
19. A. Kirmizis, S.M. Bartley, A. Kuzmichev, R. Margueron, D. Reinberg, R. Green, and P.J. Farnham Silencing of human polycomb target genes is associated with methylation of histone H3 Lys 27 Genes Dev. 18 2004 1592 1605
20. N.J. Krogan, J. Dover, A. Wood, J. Schneider, J. Heidt, M.A. Boateng, K. Dean, O.W. Ryan, A. Golshani, and M. Johnston The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: linking transcriptional elongation to histone methylation Mol. Cell 11 2003 721 729
21. S. Kubicek, and T. Jenuwein A crack in histone lysine methylation Cell 119 2004 903 906
22. M. Lachner, D. O'Carroll, S. Rea, K. Mechtler, and T. Jenuwein Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins Nature 410 2001 116 120
23. M. Lachner, R.J. O'Sullivan, and T. Jenuwein An epigenetic road map for histone lysine methylation J. Cell Sci. 116 2003 2117 2124
24. N. Lehming, A. Le Saux, J. Schuller, and M. Ptashne Chromatin components as part of a putative transcriptional repressing complex Proc. Natl. Acad. Sci. USA 95 1998 7322 7326
25. Y. Li, D.A. Kirschmann, and L.L. Wallrath Does heterochromatin protein 1 always follow code? Proc. Natl. Acad. Sci. USA 99 Suppl 4 2002 16462 16469
26. Y. Li, J.R. Danzer, P. Alvarez, A.S. Belmont, and L.L. Wallrath Effects of tethering HP1 to euchromatic regions of the Drosophila genome Development 130 2003 1817 1824
27. B.Y. Lu, P.C. Emtage, B.J. Duyf, A.J. Hilliker, and J.C. Eissenberg Heterochromatin protein 1 is required for the normal expression of two heterochromatin genes in Drosophila Genetics 155 2000 699 708
28. C. Maison, and G. Almouzni HP1 and the dynamics of heterochromatin maintenance Nat. Rev. Mol. Cell Biol. 5 2004 296 304
29. J.H. Martens, R.J. O'Sullivan, U. Braunschweig, S. Opravil, M. Radolf, P. Steinlein, and T. Jenuwein The profile of repeat-associated histone lysine methylation states in the mouse epigenome EMBO J. 24 2005 800 812
30. M. Melcher, M. Schmid, L. Aagaard, P. Selenko, G. Laible, and T. Jenuwein Structure-function analysis of SUV39H1 reveals a dominant role in heterochromatin organization, chromosome segregation, and mitotic progression Mol. Cell. Biol. 20 2000 3728 3741
31. E. Minc, J.C. Courvalin, and B. Buendia HP1gamma associates with euchromatin and heterochromatin in mammalian nuclei and chromosomes Cytogenet. Cell Genet. 90 2000 279 284
32. J. Nakayama, J.C. Rice, B.D. Strahl, C.D. Allis, and S.I. Grewal Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly Science 292 2001 110 113
33. H.H. Ng, F. Robert, R.A. Young, and K. Struhl Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity Mol. Cell 11 2003 709 719
34. S.J. Nielsen, R. Schneider, U.M. Bauer, A.J. Bannister, A. Morrison, D. O'Carroll, R. Firestein, M. Cleary, T. Jenuwein, R.E. Herrera, and T. Kouzarides Rb targets histone H3 methylation and HP1 to promoters Nature 412 2001 561 565
35. H. Ogawa, K. Ishiguro, S. Gaubatz, D.M. Livingston, and Y. Nakatani A complex with chromatin modifiers that occupies E2F- and Myc-responsive genes in G0 cells Science 296 2002 1132 1136
36. L. Perez-Burgos, A.H. Peters, S. Opravil, M. Kauer, K. Mechtler, and T. Jenuwein Generation and characterization of methyl-lysine histone antibodies Methods Enzymol. 376 2004 234 254
37. A.H. Peters, S. Kubicek, K. Mechtler, R.J. O'Sullivan, A.A. Derijck, L. Perez-Burgos, A. Kohlmaier, S. Opravil, M. Tachibana, and Y. Shinkai Partitioning and plasticity of repressive histone methylation states in mammalian chromatin Mol. Cell 12 2003 1577 1589
38. L. Piacentini, L. Fanti, M. Berloco, B. Perrini, and S. Pimpinelli Heterochromatin protein 1 (HP1) is associated with induced gene expression in Drosophila euchromatin J. Cell Biol. 161 2003 707 714
39. S. Rea, F. Eisenhaber, D. O'Carroll, B.D. Strahl, Z.W. Sun, M. Schmid, S. Opravil, K. Mechtler, C.P. Ponting, C.D. Allis, and T. Jenuwein Regulation of chromatin structure by site-specific histone H3 methyltransferases Nature 406 2000 593 599
40. J.C. Rice, S.D. Briggs, B. Ueberheide, C.M. Barber, J. Shabanowitz, D.F. Hunt, Y. Shinkai, and C.D. Allis Histone methyltransferases direct different degrees of methylation to define distinct chromatin domains Mol. Cell 12 2003 1591 1598
41. H. Santos-Rosa, R. Schneider, A.J. Bannister, J. Sherriff, B.E. Bernstein, N.C. Emre, S.L. Schreiber, J. Mellor, and T. Kouzarides Active genes are tri-methylated at K4 of histone H3 Nature 419 2002 407 411
42. K. Sarma, K. Nishioka, and D. Reinberg Tips in analyzing antibodies directed against specific histone tail modifications Methods Enzymol. 376 2004 255 269
43. G. Schotta, A. Ebert, V. Krauss, A. Fischer, J. Hoffmann, S. Rea, T. Jenuwein, R. Dorn, and G. Reuter Central role of Drosophila SU(VAR)39 in histone H3K9 methylation and heterochromatic gene silencing EMBO J. 21 2002 1121 1131
44. D. Schubeler, D.M. MacAlpine, D. Scalzo, C. Wirbelauer, C. Kooperberg, F. van Leeuwen, D.E. Gottschling, L.P. O'Neill, B.M. Turner, and J. Delrow The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote Genes Dev. 18 2004 1263 1271
45. Y. Shi, J. Sawada, G. Sui, el B. Affar, J.R. Whetstine, F. Lan, H. Ogawa, M.P. Luke, and Y. Nakatani Coordinated histone modifications mediated by a CtBP co-repressor complex Nature 422 2003 735 738
46. Y. Shi, F. Lan, C. Matson, P. Mulligan, J.R. Whetstine, P.A. Cole, and R.A. Casero Histone demethylation mediated by the nuclear amine oxidase homolog LSD1 Cell 119 2004 941 953
47. M.D. Stewart, J. Li, and J. Wong Relationship between histone H3 lysine 9 methylation, transcription repression, and heterochromatin protein 1 recruitment Mol. Cell. Biol. 25 2005 2525 2538
48. B.D. Strahl, and C.D. Allis The language of covalent histone modifications Nature 403 2000 41 45
49. B.M. Turner Cellular memory and the histone code Cell 111 2002 285 291
50. M.J. Weiss, C. Yu, and S.H. Orkin Erythroid-cell-specific properties of transcription factor GATA-1 revealed by phenotypic rescue of a gene-targeted cell line Mol. Cell. Biol. 17 1997 1642 1651
51. J.J. Welch, J.A. Watts, C.R. Vakoc, Y. Yao, H. Wang, R.C. Hardison, G.A. Blobel, L.A. Chodosh, and M.J. Weiss Global regulation of erythroid gene expression by transcription factor GATA-1 Blood 104 2004 3136 3147