-
1
-
-
4243111895
-
Modulation of floral development by a gibberellin-regulated microRNA
-
Achard P, Herr A, Baulcombe DC, Harberd NP (2004) Modulation of floral development by a gibberellin-regulated microRNA. Development 131: 3357-3365.
-
(2004)
Development
, vol.131
, pp. 3357-3365
-
-
Achard, P.1
Herr, A.2
Baulcombe, D.C.3
Harberd, N.P.4
-
2
-
-
33646191642
-
Uncoupled production of ta-siRNAs in hypomorphic rdr6 and sgs3 mutants uncovers a role for TAS3 in AGO7-DCL4-DRB4-mediated control of leaf morphology
-
Adenot X, Elmayan T, Lauressergues D, Boutet S, Bouche N, Gasciolli V, Vaucheret H (2006) Uncoupled production of ta-siRNAs in hypomorphic rdr6 and sgs3 mutants uncovers a role for TAS3 in AGO7-DCL4-DRB4-mediated control of leaf morphology. Curr Biol 16: 927-932.
-
(2006)
Curr Biol
, vol.16
, pp. 927-932
-
-
Adenot, X.1
Elmayan, T.2
Lauressergues, D.3
Boutet, S.4
Bouche, N.5
Gasciolli, V.6
Vaucheret, H.7
-
3
-
-
17444430392
-
microRNA-directed phasing during trans-acting siRNA biogenesis in plants
-
Allen E, Xie Z, Gustafson AM, Carrington JC (2005) microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 121: 207-221.
-
(2005)
Cell
, vol.121
, pp. 207-221
-
-
Allen, E.1
Xie, Z.2
Gustafson, A.M.3
Carrington, J.C.4
-
4
-
-
77953801618
-
Target RNA-directed trimming and tailing of small silencing RNAs
-
Ameres SL, Horwich MD, Hung JH, Xu J, Ghildiyal M, Weng Z, Zamore PD (2010) Target RNA-directed trimming and tailing of small silencing RNAs. Science 328: 1534-1539.
-
(2010)
Science
, vol.328
, pp. 1534-1539
-
-
Ameres, S.L.1
Horwich, M.D.2
Hung, J.H.3
Xu, J.4
Ghildiyal, M.5
Weng, Z.6
Zamore, P.D.7
-
5
-
-
0242361521
-
Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes
-
Aukerman MJ, Sakai H (2003) Regulation of flowering time and floral organ identity by a microRNA and its APETALA2-like target genes. Plant Cell 15: 2730-2741.
-
(2003)
Plant Cell
, vol.15
, pp. 2730-2741
-
-
Aukerman, M.J.1
Sakai, H.2
-
7
-
-
77951862235
-
Argonaute quenching and global changes in Dicer homeostasis caused by a pathogen-encoded GW repeat protein
-
Azevedo J, Garcia D, Pontier D, Ohnesorge S, Yu A, Garcia S, Braun L, Bergdoll M, Hakimi MA, Lagrange T, Voinnet O (2010) Argonaute quenching and global changes in Dicer homeostasis caused by a pathogen-encoded GW repeat protein. Genes Dev 24: 904-915.
-
(2010)
Genes Dev
, vol.24
, pp. 904-915
-
-
Azevedo, J.1
Garcia, D.2
Pontier, D.3
Ohnesorge, S.4
Yu, A.5
Garcia, S.6
Braun, L.7
Bergdoll, M.8
Hakimi, M.A.9
Lagrange, T.10
Voinnet, O.11
-
8
-
-
79952364512
-
Kinetic analysis reveals the fate of a microRNA following target regulation in mammalian cells
-
Baccarini A, Chauhan H, Gardner TJ, Jayaprakash AD, Sachidanandam R, Brown BD (2011) Kinetic analysis reveals the fate of a microRNA following target regulation in mammalian cells. Curr Biol 21: 369-376.
-
(2011)
Curr Biol
, vol.21
, pp. 369-376
-
-
Baccarini, A.1
Chauhan, H.2
Gardner, T.J.3
Jayaprakash, A.D.4
Sachidanandam, R.5
Brown, B.D.6
-
9
-
-
33745960196
-
PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants
-
Bari R, Datt Pant B, Stitt M, Scheible WR (2006) PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants. Plant Physiol 141: 988-999.
-
(2006)
Plant Physiol
, vol.141
, pp. 988-999
-
-
Bari, R.1
Datt Pant, B.2
Stitt, M.3
Scheible, W.R.4
-
10
-
-
0037782493
-
MicroRNAs: at the root of plant development?
-
Bartel B, Bartel DP (2003) MicroRNAs: at the root of plant development? Plant Physiol 132: 709-717.
-
(2003)
Plant Physiol
, vol.132
, pp. 709-717
-
-
Bartel, B.1
Bartel, D.P.2
-
11
-
-
23844550243
-
Arabidopsis ARGONAUTE1 is an RNA slicer that selectively recruits microRNAs and short interfering RNAs
-
Baumberger N, Baulcombe DC (2005) Arabidopsis ARGONAUTE1 is an RNA slicer that selectively recruits microRNAs and short interfering RNAs. Proc Natl Acad Sci U S A 102: 11928-11933.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 11928-11933
-
-
Baumberger, N.1
Baulcombe, D.C.2
-
12
-
-
0035905766
-
Role for a bidentate ribonuclease in the initiation step of RNA interference
-
Bernstein E, Caudy AA, Hammond SM, Hannon GJ (2001) Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature 409: 363-366.
-
(2001)
Nature
, vol.409
, pp. 363-366
-
-
Bernstein, E.1
Caudy, A.A.2
Hammond, S.M.3
Hannon, G.J.4
-
13
-
-
33845628177
-
Four plant Dicers mediate viral small RNA biogenesis and DNA virus induced silencing
-
Blevins T, Rajeswaran R, Shivaprasad PV, Beknazariants D, Si-Ammour A, Park HS, Vazquez F, Robertson D, JrF, Hohn T, Pooggin MM (2006) Four plant Dicers mediate viral small RNA biogenesis and DNA virus induced silencing. Nucleic Acids Res 34: 6233-6246.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 6233-6246
-
-
Blevins, T.1
Rajeswaran, R.2
Shivaprasad, P.V.3
Beknazariants, D.4
Si-Ammour, A.5
Park, H.S.6
Vazquez, F.7
Robertson Jr., D.F.8
Hohn, T.9
Pooggin, M.M.10
-
14
-
-
33646137364
-
The diversity of RNA silencing pathways in plants
-
Brodersen P, Voinnet O (2006) The diversity of RNA silencing pathways in plants. Trends Genet 22: 268-280.
-
(2006)
Trends Genet
, vol.22
, pp. 268-280
-
-
Brodersen, P.1
Voinnet, O.2
-
15
-
-
45849122499
-
Widespread translational inhibition by plant miRNAs and siRNAs
-
Brodersen P, Sakvarelidze-Achard L, Bruun-Rasmussen M, Dunoyer P, Yamamoto YY, Sieburth L, Voinnet O (2008) Widespread translational inhibition by plant miRNAs and siRNAs. Science 320: 1185-1190.
-
(2008)
Science
, vol.320
, pp. 1185-1190
-
-
Brodersen, P.1
Sakvarelidze-Achard, L.2
Bruun-Rasmussen, M.3
Dunoyer, P.4
Yamamoto, Y.Y.5
Sieburth, L.6
Voinnet, O.7
-
16
-
-
0037046810
-
Role of the Arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing
-
Cao X, Jacobsen SE (2002) Role of the Arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing. Curr Biol 12: 1138-1144.
-
(2002)
Curr Biol
, vol.12
, pp. 1138-1144
-
-
Cao, X.1
Jacobsen, S.E.2
-
17
-
-
0347033302
-
Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation
-
Cao X, Aufsatz W, Zilberman D, Mette MF, Huang MS, Matzke M, Jacobsen SE (2003) Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation. Curr Biol 13: 2212-2217.
-
(2003)
Curr Biol
, vol.13
, pp. 2212-2217
-
-
Cao, X.1
Aufsatz, W.2
Zilberman, D.3
Mette, M.F.4
Huang, M.S.5
Matzke, M.6
Jacobsen, S.E.7
-
18
-
-
0036828639
-
The Agronaute family: tentacles that reach into RNAi, developmental control, stem cell maintenance, and tumorigenesis
-
Carmell MA, Xuan Z, Zhang MQ, Hannon GJ (2002) The Agronaute family: tentacles that reach into RNAi, developmental control, stem cell maintenance, and tumorigenesis. Genes Dev 16: 2733-2742.
-
(2002)
Genes Dev
, vol.16
, pp. 2733-2742
-
-
Carmell, M.A.1
Xuan, Z.2
Zhang, M.Q.3
Hannon, G.J.4
-
19
-
-
0038299558
-
Role of microRNAs in plant and animal development
-
Carrington JC, Ambros V (2003) Role of microRNAs in plant and animal development. Science 301: 336-338.
-
(2003)
Science
, vol.301
, pp. 336-338
-
-
Carrington, J.C.1
Ambros, V.2
-
20
-
-
60149088848
-
Origins and mechanisms of miRNAs and siRNAs
-
Carthew RW, Sontheimer EJ (2009) Origins and mechanisms of miRNAs and siRNAs. Cell 136: 642-655.
-
(2009)
Cell
, vol.136
, pp. 642-655
-
-
Carthew, R.W.1
Sontheimer, E.J.2
-
21
-
-
0034306266
-
Domains in gene silencing and cell differentiation proteins: the novel PAZ domain and redefinition of the PIWI domain
-
Cerutii L, Mian N, Bateman A (2000) Domains in gene silencing and cell differentiation proteins: the novel PAZ domain and redefinition of the PIWI domain. Trends Biochem Sci 25: 481-482.
-
(2000)
Trends Biochem Sci
, vol.25
, pp. 481-482
-
-
Cerutii, L.1
Mian, N.2
Bateman, A.3
-
22
-
-
1642366133
-
A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development
-
Chen X (2004) A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development. Science 303: 2022-2025.
-
(2004)
Science
, vol.303
, pp. 2022-2025
-
-
Chen, X.1
-
23
-
-
34248328910
-
Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids
-
Chen ZJ (2007) Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids. Annu Rev Plant Biol 58: 377-406.
-
(2007)
Annu Rev Plant Biol
, vol.58
, pp. 377-406
-
-
Chen, Z.J.1
-
24
-
-
70350227275
-
Small RNAs and their roles in plant development
-
Chen X (2009) Small RNAs and their roles in plant development. Annu Rev Cell Dev Biol 25: 21-44.
-
(2009)
Annu Rev Cell Dev Biol
, vol.25
, pp. 21-44
-
-
Chen, X.1
-
25
-
-
77956989755
-
22-nucleotide RNAs trigger secondary siRNA biogenesis in plants
-
Chen HM, Chen LT, Patel K, Li YH, Baulcombe DC, Wu SH (2010) 22-nucleotide RNAs trigger secondary siRNA biogenesis in plants. Proc Natl Acad Sci U S A 107: 15269-5274.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 15269-15274
-
-
Chen, H.M.1
Chen, L.T.2
Patel, K.3
Li, Y.H.4
Baulcombe, D.C.5
Wu, S.H.6
-
26
-
-
33748323138
-
Epigenetic regulation of the rice retrotransposon Tos17
-
Cheng C, Daigen M, Hirochika H (2006) Epigenetic regulation of the rice retrotransposon Tos17. Mol Genet Genom 276: 378-390.
-
(2006)
Mol Genet Genom
, vol.276
, pp. 378-390
-
-
Cheng, C.1
Daigen, M.2
Hirochika, H.3
-
27
-
-
40749109894
-
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
-
Cokus SJ, Feng S, Zhang X, Chen Z, Merriman B, Haudenschild CD, Pradhan S, Nelson SF, Pelligini M, Jacobsen SE (2008) Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature 452: 215-219.
-
(2008)
Nature
, vol.452
, pp. 215-219
-
-
Cokus, S.J.1
Feng, S.2
Zhang, X.3
Chen, Z.4
Merriman, B.5
Haudenschild, C.D.6
Pradhan, S.7
Nelson, S.F.8
Pelligini, M.9
Jacobsen, S.E.10
-
28
-
-
77950953211
-
Polerovirus protein P0 prevents the assembly of small RNA-containing RISC complexes and leads to degradation of ARGONAUTE1
-
Csorba T, Lozsa R, Hutvagner G, Burgyan J (2010) Polerovirus protein P0 prevents the assembly of small RNA-containing RISC complexes and leads to degradation of ARGONAUTE1. Plant J 62: 463-472.
-
(2010)
Plant J
, vol.62
, pp. 463-472
-
-
Csorba, T.1
Lozsa, R.2
Hutvagner, G.3
Burgyan, J.4
-
29
-
-
1842427197
-
Derivation and function of small interfering RNAs and microRNAs
-
Cullen BR (2004) Derivation and function of small interfering RNAs and microRNAs. Virus Res 102: 3-9.
-
(2004)
Virus Res
, vol.102
, pp. 3-9
-
-
Cullen, B.R.1
-
30
-
-
77955418697
-
Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis
-
Cuperus JT, Carbonell A, Fahlgren N, Garcia-Ruiz H, Burke RT, Takeda A, Sullivan CM, Gilbert SD, Montgomery TA, Carrington JC (2010) Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis. Nat Struct Mol Biol 17: 997-1003.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 997-1003
-
-
Cuperus, J.T.1
Carbonell, A.2
Fahlgren, N.3
Garcia-Ruiz, H.4
Burke, R.T.5
Takeda, A.6
Sullivan, C.M.7
Gilbert, S.D.8
Montgomery, T.A.9
Carrington, J.C.10
-
31
-
-
79953086307
-
Evolution and functional diversification of miRNA genes
-
Cuperus JT, Fahlgren N, Carrington JC (2011) Evolution and functional diversification of miRNA genes. Plant Cell 23: 431-442.
-
(2011)
Plant Cell
, vol.23
, pp. 431-442
-
-
Cuperus, J.T.1
Fahlgren, N.2
Carrington, J.C.3
-
32
-
-
77951972792
-
Regulation of microRNA biogenesis: a miRiad of mechanisms
-
Davis BN, Hata A (2009) Regulation of microRNA biogenesis: a miRiad of mechanisms. Cell Commun Signal 7: 18.
-
(2009)
Cell Commun Signal
, vol.7
, pp. 18
-
-
Davis, B.N.1
Hata, A.2
-
33
-
-
58149347080
-
A stepwise pathway for biogenesis of 24-nt secondary siRNAs and spreading of DNA methylation
-
Daxinger L, Kanno T, Bucher E, van der Winden J, Naumann U, Matzke AJM, Matzke M (2009) A stepwise pathway for biogenesis of 24-nt secondary siRNAs and spreading of DNA methylation. EMBO J 28: 48-57.
-
(2009)
EMBO J
, vol.28
, pp. 48-57
-
-
Daxinger, L.1
Kanno, T.2
Bucher, E.3
van der Winden, J.4
Naumann, U.5
Matzke, A.J.M.6
Matzke, M.7
-
34
-
-
33745916446
-
Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defense
-
Deleris A, Gallego-Bartolome J, Bao J, Kasschau KD, Carrington JC, Voinnet O (2006) Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defense. Science 313: 68-71.
-
(2006)
Science
, vol.313
, pp. 68-71
-
-
Deleris, A.1
Gallego-Bartolome, J.2
Bao, J.3
Kasschau, K.D.4
Carrington, J.C.5
Voinnet, O.6
-
35
-
-
19544379019
-
The F-box protein TIR1 is an auxin receptor
-
Dharmasiri N, Dharmasiri S, Estelle M (2005) The F-box protein TIR1 is an auxin receptor. Nature 435: 441-445.
-
(2005)
Nature
, vol.435
, pp. 441-445
-
-
Dharmasiri, N.1
Dharmasiri, S.2
Estelle, M.3
-
36
-
-
34247630796
-
SDG714, a histone H3K9 methyltransferase, is involved in Tos17 DNA methylation and transposition in rice
-
Ding Y, Wang X, Su L, Zhai J, Cao S, Zhang DF, Liu CY, Bi YP, Qian Q, Cheng ZK, Chu CC, Cao XF (2007) SDG714, a histone H3K9 methyltransferase, is involved in Tos17 DNA methylation and transposition in rice. Plant Cell 19: 9-22.
-
(2007)
Plant Cell
, vol.19
, pp. 9-22
-
-
Ding, Y.1
Wang, X.2
Su, L.3
Zhai, J.4
Cao, S.5
Zhang, D.F.6
Liu, C.Y.7
Bi, Y.P.8
Qian, Q.9
Cheng, Z.K.10
Chu, C.C.11
Cao, X.F.12
-
37
-
-
44749093486
-
Sucrose induction of Arabidopsis miR398 represses two Cu/Zn superoxide dismutases
-
Dugas DV, Bartel B (2008) Sucrose induction of Arabidopsis miR398 represses two Cu/Zn superoxide dismutases. Plant Mol Biol 67: 403-417.
-
(2008)
Plant Mol Biol
, vol.67
, pp. 403-417
-
-
Dugas, D.V.1
Bartel, B.2
-
38
-
-
28444464041
-
DICER-LIKE 4 is required for RNA interference and produces the 21-nucleotide small interfering RNA component of the plant cell-to-cell silencing signal
-
Dunoyer P, Himber C, Voinnet O (2005) DICER-LIKE 4 is required for RNA interference and produces the 21-nucleotide small interfering RNA component of the plant cell-to-cell silencing signal. Nat Genet 37: 1356-1360.
-
(2005)
Nat Genet
, vol.37
, pp. 1356-1360
-
-
Dunoyer, P.1
Himber, C.2
Voinnet, O.3
-
39
-
-
35348970326
-
Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components
-
El-Shami M, Pontier D, Lahmy S, Braun L, Picart C, Vega D, Hakimi MA, Jacobsen SE, Cooke R, Lagrange T (2007) Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components. Genes Dev 21: 2539-2544.
-
(2007)
Genes Dev
, vol.21
, pp. 2539-2544
-
-
El-Shami, M.1
Pontier, D.2
Lahmy, S.3
Braun, L.4
Picart, C.5
Vega, D.6
Hakimi, M.A.7
Jacobsen, S.E.8
Cooke, R.9
Lagrange, T.10
-
40
-
-
0034633770
-
AGO1, QDE-2, and RDE-1 are related proteins required for post-transcriptional gene silencing in plants, quelling in fungi, and RNA interference in animals
-
Fagard M, Boutet S, Morel JB, Bellini C, Vaucheret H (2000) AGO1, QDE-2, and RDE-1 are related proteins required for post-transcriptional gene silencing in plants, quelling in fungi, and RNA interference in animals. Proc Natl Acad Sci U S A 97: 11650-11654.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 11650-11654
-
-
Fagard, M.1
Boutet, S.2
Morel, J.B.3
Bellini, C.4
Vaucheret, H.5
-
41
-
-
33646165249
-
Regulation of AUXIN RESPONSE FACTOR3 by TAS3 ta-siRNA affects developmental timing and patterning in Arabidopsis
-
Fahlgren N, Montgomery TA, Howell MD, Allen E, Dvorak SK, Alexander AL, Carrington JC (2006) Regulation of AUXIN RESPONSE FACTOR3 by TAS3 ta-siRNA affects developmental timing and patterning in Arabidopsis. Curr Biol 16: 939-944.
-
(2006)
Curr Biol
, vol.16
, pp. 939-944
-
-
Fahlgren, N.1
Montgomery, T.A.2
Howell, M.D.3
Allen, E.4
Dvorak, S.K.5
Alexander, A.L.6
Carrington, J.C.7
-
42
-
-
33846326234
-
Auxin-mediated lateral root formation in higher plants
-
Fukaki H, Okushima Y, Tasaka M (2007) Auxin-mediated lateral root formation in higher plants. Int Rev Cytol 256: 111-137.
-
(2007)
Int Rev Cytol
, vol.256
, pp. 111-137
-
-
Fukaki, H.1
Okushima, Y.2
Tasaka, M.3
-
43
-
-
33846904347
-
The miRNA156/157 recognition element in the 3′ UTR of the Arabidopsis SBP box gene SPL3 prevents early flowering by translational inhibition in seedlings
-
Gandikota M, Birkenbihl RP, Hohmann S, Cardon GH, Saedler H, Huijser P (2007) The miRNA156/157 recognition element in the 3′ UTR of the Arabidopsis SBP box gene SPL3 prevents early flowering by translational inhibition in seedlings. Plant J 49: 683-693.
-
(2007)
Plant J
, vol.49
, pp. 683-693
-
-
Gandikota, M.1
Birkenbihl, R.P.2
Hohmann, S.3
Cardon, G.H.4
Saedler, H.5
Huijser, P.6
-
44
-
-
77950367420
-
Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during turnip mosaic virus infection
-
Garcia-Ruiz H, Takeda A, Chapman EJ, Sullivan CM, Fahlgren N, Brempelis KJ, Carrington JC (2010) Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during turnip mosaic virus infection. Plant Cell 22: 481-496.
-
(2010)
Plant Cell
, vol.22
, pp. 481-496
-
-
Garcia-Ruiz, H.1
Takeda, A.2
Chapman, E.J.3
Sullivan, C.M.4
Fahlgren, N.5
Brempelis, K.J.6
Carrington, J.C.7
-
45
-
-
23944483216
-
Partially redundant functions of Arabidopsis DICER like enzymes and a role for DCL4 in producing trans-acting siRNAs
-
Gasciolli V, Mallory AC, Bartel DP, Vaucheret H (2005) Partially redundant functions of Arabidopsis DICER like enzymes and a role for DCL4 in producing trans-acting siRNAs. Curr Biol 15: 1494-1500.
-
(2005)
Curr Biol
, vol.15
, pp. 1494-1500
-
-
Gasciolli, V.1
Mallory, A.C.2
Bartel, D.P.3
Vaucheret, H.4
-
46
-
-
0035890987
-
Auxin regulates SCFTIR1-dependent degradation of AUX/IAA proteins
-
Gray WM, Kepinski S, Rouse D, Leyser O, Estelle M (2001) Auxin regulates SCFTIR1-dependent degradation of AUX/IAA proteins. Nature 414: 271-276.
-
(2001)
Nature
, vol.414
, pp. 271-276
-
-
Gray, W.M.1
Kepinski, S.2
Rouse, D.3
Leyser, O.4
Estelle, M.5
-
47
-
-
69949115080
-
Repression of apical homeobox genes is required for embryonic root development in Arabidopsis
-
Grigg SP, Galinha C, Kornet N, Canales C, Scheres B, Tsiantis M (2009) Repression of apical homeobox genes is required for embryonic root development in Arabidopsis. Curr Biol 19: 1485-1490.
-
(2009)
Curr Biol
, vol.19
, pp. 1485-1490
-
-
Grigg, S.P.1
Galinha, C.2
Kornet, N.3
Canales, C.4
Scheres, B.5
Tsiantis, M.6
-
48
-
-
24944510549
-
MicroRNA directs mRNA cleavage of the transcription factor NAC1 to down regulate auxin signals for Arabidopsis lateral root development
-
Guo HS, Xie Q, Fei JF, Chua NH (2005) MicroRNA directs mRNA cleavage of the transcription factor NAC1 to down regulate auxin signals for Arabidopsis lateral root development. Plant Cell 17: 1376-1386.
-
(2005)
Plant Cell
, vol.17
, pp. 1376-1386
-
-
Guo, H.S.1
Xie, Q.2
Fei, J.F.3
Chua, N.H.4
-
49
-
-
13444256465
-
ASRP: the Arabidopsis small RNA project database
-
Gustafson AM, Allen E, Givan S, Smith D, Carrington JC, Kasschau KD (2005) ASRP: the Arabidopsis small RNA project database. Nucleic Acids Res 33: D637-D640.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Gustafson, A.M.1
Allen, E.2
Givan, S.3
Smith, D.4
Carrington, J.C.5
Kasschau, K.D.6
-
50
-
-
70449588694
-
Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids
-
Ha M, Lu J, Tian L, Ramachandran V, Kasschau KD, Chapman EJ, Carrington JC, Chen X, Wang XJ, Chen ZJ (2009) Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids. Proc Natl Acad Sci U S A 106: 17835-17840.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 17835-17840
-
-
Ha, M.1
Lu, J.2
Tian, L.3
Ramachandran, V.4
Kasschau, K.D.5
Chapman, E.J.6
Carrington, J.C.7
Chen, X.8
Wang, X.J.9
Chen, Z.J.10
-
51
-
-
0033615491
-
A species of small antisense RNA in post-transcriptional gene silencing in plants
-
Hamilton A, Baulcombe DC (1999) A species of small antisense RNA in post-transcriptional gene silencing in plants. Science 286: 950-952.
-
(1999)
Science
, vol.286
, pp. 950-952
-
-
Hamilton, A.1
Baulcombe, D.C.2
-
52
-
-
0037009520
-
Two classes of short interfering RNA in RNA silencing
-
Hamilton A, Voinnet O, Chappell L, Baulcombe D (2002) Two classes of short interfering RNA in RNA silencing. EMBO J 21: 4671-4679.
-
(2002)
EMBO J
, vol.21
, pp. 4671-4679
-
-
Hamilton, A.1
Voinnet, O.2
Chappell, L.3
Baulcombe, D.4
-
53
-
-
0034673638
-
An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells
-
Hammond SM, Bernstein E, Beach D, Hannon GJ (2000) An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells. Nature 404: 293-296.
-
(2000)
Nature
, vol.404
, pp. 293-296
-
-
Hammond, S.M.1
Bernstein, E.2
Beach, D.3
Hannon, G.J.4
-
54
-
-
79551631627
-
An antiviral defense role of AGO2 in plants
-
Harvey JJ, Lewsey MG, Patel K, Westwood J, Heimstadt S, Carr JP, Baulcombe DC (2011) An antiviral defense role of AGO2 in plants. PLoS One 6: e14639.
-
(2011)
PLoS One
, vol.6
-
-
Harvey, J.J.1
Lewsey, M.G.2
Patel, K.3
Westwood, J.4
Heimstadt, S.5
Carr, J.P.6
Baulcombe, D.C.7
-
55
-
-
33745279055
-
Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning
-
Henderson IR, Zhang X, Lu C, Johnson L, Meyers BC, Green PJ, Jacobsen SE (2006) Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning. Nat Genet 38: 721-725.
-
(2006)
Nat Genet
, vol.38
, pp. 721-725
-
-
Henderson, I.R.1
Zhang, X.2
Lu, C.3
Johnson, L.4
Meyers, B.C.5
Green, P.J.6
Jacobsen, S.E.7
-
56
-
-
20244378840
-
Specific interactions between Dicer-like proteins and HYL1/DRB-family dsRNA-binding proteins in Arabidopsis thaliana
-
Hiraguri A, Itoh R, Kondo N, Nomura Y, Aizawa D, Murai Y, Koiwa H, Seki M, Shinozaki K, Fukuhara T (2005) Specific interactions between Dicer-like proteins and HYL1/DRB-family dsRNA-binding proteins in Arabidopsis thaliana. Plant Mol Biol 57: 173-188.
-
(2005)
Plant Mol Biol
, vol.57
, pp. 173-188
-
-
Hiraguri, A.1
Itoh, R.2
Kondo, N.3
Nomura, Y.4
Aizawa, D.5
Murai, Y.6
Koiwa, H.7
Seki, M.8
Shinozaki, K.9
Fukuhara, T.10
-
58
-
-
0035800521
-
A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA
-
Hutvagner G, McLachlan J, Pasquinelli AE, Balint E, Tuschl T, Zamore PD (2001) A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA. Science 293: 834-838.
-
(2001)
Science
, vol.293
, pp. 834-838
-
-
Hutvagner, G.1
McLachlan, J.2
Pasquinelli, A.E.3
Balint, E.4
Tuschl, T.5
Zamore, P.D.6
-
60
-
-
33745668459
-
Parent-dependent loss of gene silencing during interspecies hybridization
-
Josefsson C, Dilkes B, Comai L (2006) Parent-dependent loss of gene silencing during interspecies hybridization. Curr Biol 16: 1322-1328.
-
(2006)
Curr Biol
, vol.16
, pp. 1322-1328
-
-
Josefsson, C.1
Dilkes, B.2
Comai, L.3
-
61
-
-
1542317414
-
MicroRNA-mediated repression of rolled leaf1specifies maize leaf polarity
-
Juarez MT, Kui JS, Thomas J, Heller BA, Timmermans MCP (2004) MicroRNA-mediated repression of rolled leaf1specifies maize leaf polarity. Nature 428: 84-88.
-
(2004)
Nature
, vol.428
, pp. 84-88
-
-
Juarez, M.T.1
Kui, J.S.2
Thomas, J.3
Heller, B.A.4
Timmermans, M.C.P.5
-
62
-
-
77449131843
-
MicroRNA assassins: factors that regulate the disappearance of miRNAs
-
Kai ZS, Pasquinelli AE (2010) MicroRNA assassins: factors that regulate the disappearance of miRNAs. Nat Struct Mol Biol 17: 5-10.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 5-10
-
-
Kai, Z.S.1
Pasquinelli, A.E.2
-
63
-
-
42649089072
-
A structural maintenance of chromosomes hinge domain containing protein is required for RNA-directed DNA methylation
-
Kanno T, Bucher E, Daxinger L, Huettel B, Bohmdorfer G, Gregor W, Kreil DP, Matzke M, Matzke AJM (2008) A structural maintenance of chromosomes hinge domain containing protein is required for RNA-directed DNA methylation. Nat Genet 40: 670-675.
-
(2008)
Nat Genet
, vol.40
, pp. 670-675
-
-
Kanno, T.1
Bucher, E.2
Daxinger, L.3
Huettel, B.4
Bohmdorfer, G.5
Gregor, W.6
Kreil, D.P.7
Matzke, M.8
Matzke, A.J.M.9
-
64
-
-
0037320231
-
P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA function
-
Kasschau KD, Xie Z, Allen E, Llave C, Chapman EJ, Krizan KA, Carrington JC (2003) P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA function. Dev Cell 4: 205-217.
-
(2003)
Dev Cell
, vol.4
, pp. 205-217
-
-
Kasschau, K.D.1
Xie, Z.2
Allen, E.3
Llave, C.4
Chapman, E.J.5
Krizan, K.A.6
Carrington, J.C.7
-
65
-
-
61449186404
-
Selective stabilization of mammalian microRNAs by 3′adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2
-
Katoh T, Sakaguchi Y, Miyauchi K, Suzuki T, Kashiwabara S, Baba T, Suzuki T (2009) Selective stabilization of mammalian microRNAs by 3′adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2. Genes Dev 23: 433-438.
-
(2009)
Genes Dev
, vol.23
, pp. 433-438
-
-
Katoh, T.1
Sakaguchi, Y.2
Miyauchi, K.3
Suzuki, T.4
Kashiwabara, S.5
Baba, T.6
Suzuki, T.7
-
66
-
-
0035887005
-
Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans
-
Ketting RF, Fischer SE, Bernstein E, Sijen T, Hannon GJ, Plasterk RH (2001) Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans. Genes Dev 15: 2654-2659.
-
(2001)
Genes Dev
, vol.15
, pp. 2654-2659
-
-
Ketting, R.F.1
Fischer, S.E.2
Bernstein, E.3
Sijen, T.4
Hannon, G.J.5
Plasterk, R.H.6
-
67
-
-
80051932344
-
MicroRNAs as regulators of root development and architecture
-
Khan GA, Declerck M, Sorin C, Hartmann C, Crespi M, Lelandais-Briè C (2011) MicroRNAs as regulators of root development and architecture. Plant Mol Biol 77: 47-58.
-
(2011)
Plant Mol Biol
, vol.77
, pp. 47-58
-
-
Khan, G.A.1
Declerck, M.2
Sorin, C.3
Hartmann, C.4
Crespi, M.5
Lelandais-Briè, C.6
-
68
-
-
76649099558
-
The many roles of small RNAs in leaf development
-
Kidner CA (2010) The many roles of small RNAs in leaf development. J Genet Genomics 37: 13-21.
-
(2010)
J Genet Genomics
, vol.37
, pp. 13-21
-
-
Kidner, C.A.1
-
69
-
-
41149149873
-
Sorting out small RNAs
-
Kim VN (2008) Sorting out small RNAs. Cell 133: 25-26.
-
(2008)
Cell
, vol.133
, pp. 25-26
-
-
Kim, V.N.1
-
70
-
-
68149180031
-
Histone acetyltransferase GCN5 interferes with the miRNA pathway in Arabidopsis
-
Kim W, Benhamed M, Servet C, Latrasse D, Zhang W, Delarue M, Zhou DX (2009) Histone acetyltransferase GCN5 interferes with the miRNA pathway in Arabidopsis. Cell Res 19: 899-909.
-
(2009)
Cell Res
, vol.19
, pp. 899-909
-
-
Kim, W.1
Benhamed, M.2
Servet, C.3
Latrasse, D.4
Zhang, W.5
Delarue, M.6
Zhou, D.X.7
-
71
-
-
52949113419
-
RNAi, heterochromatin and the cell cycle
-
Kloc A, Martienssen R (2008) RNAi, heterochromatin and the cell cycle. Trends Genet 24: 511-517.
-
(2008)
Trends Genet
, vol.24
, pp. 511-517
-
-
Kloc, A.1
Martienssen, R.2
-
72
-
-
31044434491
-
The interaction between DCL1 and HYL1 is important for efficient and precise processing of pri-miRNA in plant microRNA biogenesis
-
Kurihara Y, Takashi Y, Watanabe Y (2006) The interaction between DCL1 and HYL1 is important for efficient and precise processing of pri-miRNA in plant microRNA biogenesis. RNA 12: 206-212.
-
(2006)
Rna
, vol.12
, pp. 206-212
-
-
Kurihara, Y.1
Takashi, Y.2
Watanabe, Y.3
-
73
-
-
80053065324
-
A 5-methylcytosine DNA glycosylase/lyase demethylates the retrotransposon Tos17 and promotes its transposition in rice
-
La H, Ding B, Mishra GP, Zhou B, Yang H, Bellizzi M, Chen S, Meyers BC, Peng Z, Zhu JK, Wang GL (2011) A 5-methylcytosine DNA glycosylase/lyase demethylates the retrotransposon Tos17 and promotes its transposition in rice. Proc Natl Acad Sci U S A 108: 15498-15503.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 15498-15503
-
-
La, H.1
Ding, B.2
Mishra, G.P.3
Zhou, B.4
Yang, H.5
Bellizzi, M.6
Chen, S.7
Meyers, B.C.8
Peng, Z.9
Zhu, J.K.10
Wang, G.L.11
-
74
-
-
33745516843
-
Small RNA binding is a common strategy to suppress RNA silencing by several viral suppressors
-
Lakatos L, Csorba T, Pantaleo V, Chapman EJ, Carrington JC, Liu YP, Dolja VV, Calvino LF, Lopez-Moya JJ, Burgyan J (2006) Small RNA binding is a common strategy to suppress RNA silencing by several viral suppressors. EMBO J 25: 2768-2780.
-
(2006)
EMBO J
, vol.25
, pp. 2768-2780
-
-
Lakatos, L.1
Csorba, T.2
Pantaleo, V.3
Chapman, E.J.4
Carrington, J.C.5
Liu, Y.P.6
Dolja, V.V.7
Calvino, L.F.8
Lopez-Moya, J.J.9
Burgyan, J.10
-
75
-
-
0037009364
-
MicroRNA maturation: stepwise processing and sub-cellular localization
-
Lee Y, Jeon K, Lee JT, Kim S, Kim VN (2002) MicroRNA maturation: stepwise processing and sub-cellular localization. EMBO J 21: 4663-4670.
-
(2002)
EMBO J
, vol.21
, pp. 4663-4670
-
-
Lee, Y.1
Jeon, K.2
Lee, J.T.3
Kim, S.4
Kim, V.N.5
-
76
-
-
8144225486
-
MicroRNA genes are transcribed by RNA polymerase II
-
Lee Y, Kim M, Han J, Yeom KH, Lee S, Baek SH, Kim VN (2004) MicroRNA genes are transcribed by RNA polymerase II. EMBO J 23: 4051-4060.
-
(2004)
EMBO J
, vol.23
, pp. 4051-4060
-
-
Lee, Y.1
Kim, M.2
Han, J.3
Yeom, K.H.4
Lee, S.5
Baek, S.H.6
Kim, V.N.7
-
77
-
-
23944493378
-
Methylation protects miRNAs and siRNAs from a 3′-end uridylation activity in Arabidopsis
-
Li J, Yang Z, Yu B, Liu J, Chen X (2005) Methylation protects miRNAs and siRNAs from a 3′-end uridylation activity in Arabidopsis. Curr Biol 15: 1501-1507.
-
(2005)
Curr Biol
, vol.15
, pp. 1501-1507
-
-
Li, J.1
Yang, Z.2
Yu, B.3
Liu, J.4
Chen, X.5
-
78
-
-
78650637906
-
Epigenetic reprogramming during vegetative phase change in maize
-
Li H, Freeling M, Lisch D (2010) Epigenetic reprogramming during vegetative phase change in maize. Proc Natl Acad Sci U S A 107: 22184-22189.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 22184-22189
-
-
Li, H.1
Freeling, M.2
Lisch, D.3
-
79
-
-
0035874929
-
Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation
-
Lindroth AM, Cao X, Jackson JP, Zilberman D, McCallum CM, Henikoff S, Jacobsen SE (2001) Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation. Science 292: 2077-2080.
-
(2001)
Science
, vol.292
, pp. 2077-2080
-
-
Lindroth, A.M.1
Cao, X.2
Jackson, J.P.3
Zilberman, D.4
McCallum, C.M.5
Henikoff, S.6
Jacobsen, S.E.7
-
80
-
-
66449124318
-
Epigenetic regulation of transposable elements in plants
-
Lisch D (2009) Epigenetic regulation of transposable elements in plants. Annu Rev Plant Biol 60: 43-66.
-
(2009)
Annu Rev Plant Biol
, vol.60
, pp. 43-66
-
-
Lisch, D.1
-
81
-
-
33644795388
-
Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice
-
Liu B, Li P, Li X, Liu C, Cao S, Chu C, Cao X (2005) Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice. Plant Physiol 139: 296-305.
-
(2005)
Plant Physiol
, vol.139
, pp. 296-305
-
-
Liu, B.1
Li, P.2
Li, X.3
Liu, C.4
Cao, S.5
Chu, C.6
Cao, X.7
-
82
-
-
35748967300
-
Oryza sativa Dicer-like-4 reveals a key role for small interfering RNA silencing in plant development
-
Liu B, Chen Z, Song X, Liu C, Cui X, Zhao X, Fang J, Xu W, Zhang H, Wang X, Chu C, Deng X, Xue Y, Cao X (2007) Oryza sativa Dicer-like-4 reveals a key role for small interfering RNA silencing in plant development. Plant Cell 19: 2705-2718.
-
(2007)
Plant Cell
, vol.19
, pp. 2705-2718
-
-
Liu, B.1
Chen, Z.2
Song, X.3
Liu, C.4
Cui, X.5
Zhao, X.6
Fang, J.7
Xu, W.8
Zhang, H.9
Wang, X.10
Chu, C.11
Deng, X.12
Xue, Y.13
Cao, X.14
-
83
-
-
73649095856
-
Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic marks for open chromatin across the maize genome
-
Liu S, Yeh CT, Ji T, Ying K, Wu H, Tang HM, Fu Y, Nettleton D, Schnable PS (2009) Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic marks for open chromatin across the maize genome. PLoS Genet 5: e1000733.
-
(2009)
PLoS Genet
, vol.5
-
-
Liu, S.1
Yeh, C.T.2
Ji, T.3
Ying, K.4
Wu, H.5
Tang, H.M.6
Fu, Y.7
Nettleton, D.8
Schnable, P.S.9
-
85
-
-
0037144457
-
Cleavage of scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA
-
Llave C, Xie Z, Kasschau KD, Carrington JC (2002b) Cleavage of scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA. Science 297: 2053-2056.
-
(2002)
Science
, vol.297
, pp. 2053-2056
-
-
Llave, C.1
Xie, Z.2
Kasschau, K.D.3
Carrington, J.C.4
-
86
-
-
24644490196
-
Elucidation of the small RNA component of the transcriptome
-
Lu C, Tej SS, Luo S, Haudenschild CD, Meyers BC, Green PJ (2005) Elucidation of the small RNA component of the transcriptome. Science 309: 1567-1569.
-
(2005)
Science
, vol.309
, pp. 1567-1569
-
-
Lu, C.1
Tej, S.S.2
Luo, S.3
Haudenschild, C.D.4
Meyers, B.C.5
Green, P.J.6
-
87
-
-
51749111395
-
Roles of microRNA in plant defense and virus offense interaction
-
Lu Y, Gan Q, Chi X, Qin S (2008) Roles of microRNA in plant defense and virus offense interaction. Plant Cell Rep 27: 1571-1579.
-
(2008)
Plant Cell Rep
, vol.27
, pp. 1571-1579
-
-
Lu, Y.1
Gan, Q.2
Chi, X.3
Qin, S.4
-
89
-
-
84859464802
-
Maternal siRNAs as regulators of parental genome imbalance and gene expression in endosperm of Arabidopsis seeds
-
Lu J, Zhanga C, Baulcombe DC, Chena ZJ (2012) Maternal siRNAs as regulators of parental genome imbalance and gene expression in endosperm of Arabidopsis seeds. Proc Natl Acad Sci U S A 109: 5529-5534.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 5529-5534
-
-
Lu, J.1
Zhanga, C.2
Baulcombe, D.C.3
Chena, Z.J.4
-
90
-
-
2942697259
-
MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs
-
Mallory AC, Dugas DV, Bartel DP, Bartel B (2004) MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs. Curr Biol 14: 1035-1046.
-
(2004)
Curr Biol
, vol.14
, pp. 1035-1046
-
-
Mallory, A.C.1
Dugas, D.V.2
Bartel, D.P.3
Bartel, B.4
-
91
-
-
33646082498
-
The evolution and diversification of Dicers in plants
-
Margis R, Fusaro AF, Smith NA, Curtin SJ, Watson JM, Finnegan EJ, Waterhouse PM (2006) The evolution and diversification of Dicers in plants. FEBS Lett 580: 2442-2450.
-
(2006)
FEBS Lett
, vol.580
, pp. 2442-2450
-
-
Margis, R.1
Fusaro, A.F.2
Smith, N.A.3
Curtin, S.J.4
Watson, J.M.5
Finnegan, E.J.6
Waterhouse, P.M.7
-
92
-
-
77953193344
-
miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth
-
Marin E, Jouannet V, Herz A, Lokerse AS, Weijers D, Vaucheret H, Nussaume CM, Maizel A (2010) miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth. Plant Cell 22: 1104-1117.
-
(2010)
Plant Cell
, vol.22
, pp. 1104-1117
-
-
Marin, E.1
Jouannet, V.2
Herz, A.3
Lokerse, A.S.4
Weijers, D.5
Vaucheret, H.6
Nussaume, C.M.7
Maizel, A.8
-
93
-
-
0036179411
-
RNAi in Dictyostelium: role for RNA directed RNA polymerases and double-stranded RNase
-
Martens H, Novotny J, Oberstrass J, Steck TL, Postlethwait P, Nellen W (2002) RNAi in Dictyostelium: role for RNA directed RNA polymerases and double-stranded RNase. Mol Biol Cell 13: 445-453.
-
(2002)
Mol Biol Cell
, vol.13
, pp. 445-453
-
-
Martens, H.1
Novotny, J.2
Oberstrass, J.3
Steck, T.L.4
Postlethwait, P.5
Nellen, W.6
-
94
-
-
0037031576
-
Single-stranded antisense siRNAs guide target RNA cleavage in RNAi
-
Martinez J, Patkaniowska A, Urlaub H, Luhrmann R, Tuschl T (2002) Single-stranded antisense siRNAs guide target RNA cleavage in RNAi. Cell 110: 563-574.
-
(2002)
Cell
, vol.110
, pp. 563-574
-
-
Martinez, J.1
Patkaniowska, A.2
Urlaub, H.3
Luhrmann, R.4
Tuschl, T.5
-
95
-
-
10644237968
-
RNAi-mediated pathways in the nucleus
-
Matzke MA, Birchler JA (2005) RNAi-mediated pathways in the nucleus. Nat Rev Genet 6: 24-35.
-
(2005)
Nat Rev Genet
, vol.6
, pp. 24-35
-
-
Matzke, M.A.1
Birchler, J.A.2
-
96
-
-
65249148019
-
RNA-mediated chromatin-based silencing in plants
-
Matzke M, Kanno T, Daxinger L, Huettel B, Matzke AJM (2009) RNA-mediated chromatin-based silencing in plants. Curr Opin Cell Biol 21: 367-376.
-
(2009)
Curr Opin Cell Biol
, vol.21
, pp. 367-376
-
-
Matzke, M.1
Kanno, T.2
Daxinger, L.3
Huettel, B.4
Matzke, A.J.M.5
-
97
-
-
0035822096
-
Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shoots
-
McConnell JR, Emery J, Eshed Y, Bao N, Bowman J, Barton MK (2001) Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shoots. Nature 411: 709-713.
-
(2001)
Nature
, vol.411
, pp. 709-713
-
-
McConnell, J.R.1
Emery, J.2
Eshed, Y.3
Bao, N.4
Bowman, J.5
Barton, M.K.6
-
98
-
-
33748132234
-
MicroRNA promoter element discovery in Arabidopsis
-
Megraw M, Baev V, Rusinov V, Jensen ST, Kalantidis K, Hatzigeorgiou AG (2006) MicroRNA promoter element discovery in Arabidopsis. RNA 12: 1612-1619.
-
(2006)
Rna
, vol.12
, pp. 1612-1619
-
-
Megraw, M.1
Baev, V.2
Rusinov, V.3
Jensen, S.T.4
Kalantidis, K.5
Hatzigeorgiou, A.G.6
-
99
-
-
73949114608
-
Genome-wide survey of rice microRNAs and microRNA-target pairs in the root of a novel auxin-resistant mutant
-
Meng Y, Huang F, Shi Q, Cao J, Chen D, Zhang J, Ni J, Wu P, Chen M (2009) Genome-wide survey of rice microRNAs and microRNA-target pairs in the root of a novel auxin-resistant mutant. Planta 230: 883-898.
-
(2009)
Planta
, vol.230
, pp. 883-898
-
-
Meng, Y.1
Huang, F.2
Shi, Q.3
Cao, J.4
Chen, D.5
Zhang, J.6
Ni, J.7
Wu, P.8
Chen, M.9
-
100
-
-
82755171888
-
The regulatory activities of plant microRNAs: a more dynamic perspective
-
Meng Y, Shao C, Wang H, Chen M (2011) The regulatory activities of plant microRNAs: a more dynamic perspective. Plant Physiol 157: 1583-1595.
-
(2011)
Plant Physiol
, vol.157
, pp. 1583-1595
-
-
Meng, Y.1
Shao, C.2
Wang, H.3
Chen, M.4
-
101
-
-
33744910840
-
Double-stranded RNA binding may be a general plant RNA viral strategy to suppress RNA silencing
-
Merai Z, Kerenyi Z, Kertesz S, Magna M, Lakatos L, Silhavy D (2006) Double-stranded RNA binding may be a general plant RNA viral strategy to suppress RNA silencing. J Virol 80: 5747-5756.
-
(2006)
J Virol
, vol.80
, pp. 5747-5756
-
-
Merai, Z.1
Kerenyi, Z.2
Kertesz, S.3
Magna, M.4
Lakatos, L.5
Silhavy, D.6
-
102
-
-
41349114789
-
Sorting of small RNAs into Arabidopsis Argonaute complexes is directed by the 5′ terminal nucleotide
-
Mi S, Cai T, Hu Y, Chen Y, Hodges E, Ni F, Wu L, Li S, Zhou H, Long C, Chen S, Hannon GJ, Qi Y (2008) Sorting of small RNAs into Arabidopsis Argonaute complexes is directed by the 5′ terminal nucleotide. Cell 133: 116-127.
-
(2008)
Cell
, vol.133
, pp. 116-127
-
-
Mi, S.1
Cai, T.2
Hu, Y.3
Chen, Y.4
Hodges, E.5
Ni, F.6
Wu, L.7
Li, S.8
Zhou, H.9
Long, C.10
Chen, S.11
Hannon, G.J.12
Qi, Y.13
-
103
-
-
0035837378
-
Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis
-
Miura A, Yonebayashi S, Watanabe K, Toyama T, Shimada H, Kakutani T (2001) Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis. Nature 411: 212-214.
-
(2001)
Nature
, vol.411
, pp. 212-214
-
-
Miura, A.1
Yonebayashi, S.2
Watanabe, K.3
Toyama, T.4
Shimada, H.5
Kakutani, T.6
-
104
-
-
41149158475
-
Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation
-
Montgomery TA, Howell MD, Cuperus JT, Li D, Hansen JE, Alexander AL, Chapman EJ, Fahlgren N, Allen E, Carrington JC (2008) Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation. Cell 133: 128-141.
-
(2008)
Cell
, vol.133
, pp. 128-141
-
-
Montgomery, T.A.1
Howell, M.D.2
Cuperus, J.T.3
Li, D.4
Hansen, J.E.5
Alexander, A.L.6
Chapman, E.J.7
Fahlgren, N.8
Allen, E.9
Carrington, J.C.10
-
105
-
-
0036009918
-
Fertile hypomorphic ARGONAUTE (ago1) mutants impaired in post-transcriptional gene silencing and virus resistance
-
Morel J-B, Gordon C, Mourrain P, Beclin C, Boutet S, Feuerbach F, Proux F, Vaucheret H (2002) Fertile hypomorphic ARGONAUTE (ago1) mutants impaired in post-transcriptional gene silencing and virus resistance. Plant Cell 14: 629-639.
-
(2002)
Plant Cell
, vol.14
, pp. 629-639
-
-
Morel, J.-B.1
Gordon, C.2
Mourrain, P.3
Beclin, C.4
Boutet, S.5
Feuerbach, F.6
Proux, F.7
Vaucheret, H.8
-
106
-
-
67650461957
-
Uniparental expression of PolI V-dependent siRNAs in developing endosperm of Arabidopsis
-
Mosher RA, Melnyk CW, Kelly KA, Dunn RM, Studholme DJ, Baulcombe DC (2009) Uniparental expression of PolI V-dependent siRNAs in developing endosperm of Arabidopsis. Nature 460: 283-286.
-
(2009)
Nature
, vol.460
, pp. 283-286
-
-
Mosher, R.A.1
Melnyk, C.W.2
Kelly, K.A.3
Dunn, R.M.4
Studholme, D.J.5
Baulcombe, D.C.6
-
107
-
-
0037087780
-
miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs
-
Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L, Rappsilber J, Mann M, Dreyfuss G (2002) miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs. Genes Dev 16: 720-728.
-
(2002)
Genes Dev
, vol.16
, pp. 720-728
-
-
Mourelatos, Z.1
Dostie, J.2
Paushkin, S.3
Sharma, A.4
Charroux, B.5
Abel, L.6
Rappsilber, J.7
Mann, M.8
Dreyfuss, G.9
-
108
-
-
0034716907
-
Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance
-
Mourrain P, Béclin C, Elmayan T, Feuerbach F, Godon C, Morel J, Jouette D, Lacombe A, Nikic S, Picault N, Rémoué K, Sanial M, Vo T, Vaucheret H (2000) Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance. Cell 101: 533-542.
-
(2000)
Cell
, vol.101
, pp. 533-542
-
-
Mourrain, P.1
Béclin, C.2
Elmayan, T.3
Feuerbach, F.4
Godon, C.5
Morel, J.6
Jouette, D.7
Lacombe, A.8
Nikic, S.9
Picault, N.10
Rémoué, K.11
Sanial, M.12
Vo, T.13
Vaucheret, H.14
-
109
-
-
33645967758
-
A plant miRNA contributes to antibacterial resistance by repressing auxin signaling
-
Navarro L, Dunoyer P, Jay F, Arnold B, Dharmasiri N, Estelle M, Voinnet O, Jones JDG (2006) A plant miRNA contributes to antibacterial resistance by repressing auxin signaling. Science 312: 436-439.
-
(2006)
Science
, vol.312
, pp. 436-439
-
-
Navarro, L.1
Dunoyer, P.2
Jay, F.3
Arnold, B.4
Dharmasiri, N.5
Estelle, M.6
Voinnet, O.7
Jones, J.D.G.8
-
110
-
-
0642285627
-
The microRNA world: small is mighty
-
Nelson P, Kiriakidou M, Sharma A, Maniataki E, Mourelatos Z (2003) The microRNA world: small is mighty. Trends Biochem Sci 28: 534-540.
-
(2003)
Trends Biochem Sci
, vol.28
, pp. 534-540
-
-
Nelson, P.1
Kiriakidou, M.2
Sharma, A.3
Maniataki, E.4
Mourelatos, Z.5
-
111
-
-
84862777313
-
Big roles for small RNAs in polyploidy, hybrid vigor, and hybrid incompatibility
-
Ng DW-K, Lu J, Chen ZJ (2012) Big roles for small RNAs in polyploidy, hybrid vigor, and hybrid incompatibility. Curr Opin Plant Biol 15: 154-161.
-
(2012)
Curr Opin Plant Biol
, vol.15
, pp. 154-161
-
-
Ng, D.W.-K.1
Lu, J.2
Chen, Z.J.3
-
112
-
-
0035798415
-
ATP requirements and small interfering RNA structure in the RNA interference pathway
-
Nykanen A, Haley B, Zamore PD (2001) ATP requirements and small interfering RNA structure in the RNA interference pathway. Cell 107: 309-321.
-
(2001)
Cell
, vol.107
, pp. 309-321
-
-
Nykanen, A.1
Haley, B.2
Zamore, P.D.3
-
113
-
-
0141493493
-
Control of leaf morphogenesis by microRNAs
-
Palatnik JF, Allen E, Wu XL, Schommer C, Schwab R, Carrington JC, Weigel D (2003) Control of leaf morphogenesis by microRNAs. Nature 425: 257-263.
-
(2003)
Nature
, vol.425
, pp. 257-263
-
-
Palatnik, J.F.1
Allen, E.2
Wu, X.L.3
Schommer, C.4
Schwab, R.5
Carrington, J.C.6
Weigel, D.7
-
114
-
-
0030875953
-
Systemic acquired silencing: transgene-specific post-transcriptional silencing is transmitted by grafting from silenced stocks to non-silenced scions
-
Palauqui JC, Elmayan T, Pollien JM, Vaucheret H (1997) Systemic acquired silencing: transgene-specific post-transcriptional silencing is transmitted by grafting from silenced stocks to non-silenced scions. EMBO J 16: 4738-4745.
-
(1997)
EMBO J
, vol.16
, pp. 4738-4745
-
-
Palauqui, J.C.1
Elmayan, T.2
Pollien, J.M.3
Vaucheret, H.4
-
115
-
-
84861011725
-
Cloning and expression studies of novel small RNAs in tetraploid cotton
-
Pang M, Hanson SF, Zhang J (2012) Cloning and expression studies of novel small RNAs in tetraploid cotton. Plant Mol Biol Rep 30: 710-718.
-
(2012)
Plant Mol Biol Rep
, vol.30
, pp. 710-718
-
-
Pang, M.1
Hanson, S.F.2
Zhang, J.3
-
116
-
-
0037015239
-
CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana
-
Park W, Li J, Song R, Messing J, Chen X (2002) CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana. Curr Biol 12: 1484-1495.
-
(2002)
Curr Biol
, vol.12
, pp. 1484-1495
-
-
Park, W.1
Li, J.2
Song, R.3
Messing, J.4
Chen, X.5
-
117
-
-
11444257736
-
The small but mighty RNA-mediated interference in plants
-
Pattanayak D, Agarwal S, Sumathi T, Chakrabarti SK, Naik PS, Khurana SMP (2005) The small but mighty RNA-mediated interference in plants. Indian J Exp Biol 43: 7-24.
-
(2005)
Indian J Exp Biol
, vol.43
, pp. 7-24
-
-
Pattanayak, D.1
Agarwal, S.2
Sumathi, T.3
Chakrabarti, S.K.4
Naik, P.S.5
Khurana, S.M.P.6
-
118
-
-
4644286235
-
SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis
-
Peragine A, Yoshikawa M, Wu G, Albrecht HL, Poethig RS (2004) SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis. Genes Dev 18: 2368-2379.
-
(2004)
Genes Dev
, vol.18
, pp. 2368-2379
-
-
Peragine, A.1
Yoshikawa, M.2
Wu, G.3
Albrecht, H.L.4
Poethig, R.S.5
-
119
-
-
23044478505
-
Biochemical specialization within Arabidopsis RNA silencing pathways
-
Qi Y, Denli AM, Hannon GJ (2005) Biochemical specialization within Arabidopsis RNA silencing pathways. Mol Cell 19: 421-428.
-
(2005)
Mol Cell
, vol.19
, pp. 421-428
-
-
Qi, Y.1
Denli, A.M.2
Hannon, G.J.3
-
120
-
-
55749088651
-
Arabidopsis DRB4, AGO1, AGO7, and RDR6 participate in a DCL4-initiated antiviral RNA silencing pathway negatively regulated by DCL1
-
Qu F, Ye X, Morris JT (2008) Arabidopsis DRB4, AGO1, AGO7, and RDR6 participate in a DCL4-initiated antiviral RNA silencing pathway negatively regulated by DCL1. Proc Natl Acad Sci U S A 105: 14732-14737.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 14732-14737
-
-
Qu, F.1
Ye, X.2
Morris, J.T.3
-
121
-
-
33845688601
-
A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
-
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP (2006) A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev 20: 3407-3425.
-
(2006)
Genes Dev
, vol.20
, pp. 3407-3425
-
-
Rajagopalan, R.1
Vaucheret, H.2
Trejo, J.3
Bartel, D.P.4
-
122
-
-
51749093103
-
Degradation of microRNAs by a family of exoribonucleases in Arabidopsis
-
Ramachandran V, Chen X (2008) Degradation of microRNAs by a family of exoribonucleases in Arabidopsis. Science 321: 1490-1492.
-
(2008)
Science
, vol.321
, pp. 1490-1492
-
-
Ramachandran, V.1
Chen, X.2
-
123
-
-
0036645146
-
MicroRNAs in plants
-
Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP (2002) MicroRNAs in plants. Genes Dev 16: 1616-1626.
-
(2002)
Genes Dev
, vol.16
, pp. 1616-1626
-
-
Reinhart, B.J.1
Weinstein, E.G.2
Rhoades, M.W.3
Bartel, B.4
Bartel, D.P.5
-
124
-
-
0037162702
-
Prediction of plant microRNA targets
-
Rhoades M, Reinhart B, Lim L, Burge C, Bartel B, Bartel D (2002) Prediction of plant microRNA targets. Cell 110: 513-520.
-
(2002)
Cell
, vol.110
, pp. 513-520
-
-
Rhoades, M.1
Reinhart, B.2
Lim, L.3
Burge, C.4
Bartel, B.5
Bartel, D.6
-
125
-
-
79955705363
-
MicroRNA networks and developmental plasticity in plants
-
Rubio-Somoza I, Weigel D (2011) MicroRNA networks and developmental plasticity in plants. Trends Plant Sci 16: 258-264.
-
(2011)
Trends Plant Sci
, vol.16
, pp. 258-264
-
-
Rubio-Somoza, I.1
Weigel, D.2
-
126
-
-
84861075495
-
DNA methylation in plants: relationship to small RNAs and histone modifications, and functions in transposon inactivation
-
Saze H, Tsugane K, Kanno T, Nishimura T (2012) DNA methylation in plants: relationship to small RNAs and histone modifications, and functions in transposon inactivation. Plant Cell Physiol 53: 766-784.
-
(2012)
Plant Cell Physiol
, vol.53
, pp. 766-784
-
-
Saze, H.1
Tsugane, K.2
Kanno, T.3
Nishimura, T.4
-
128
-
-
84861841898
-
Differential effects of viral silencing suppressors on siRNA and miRNA loading support the existence of two distinct cellular pools of ARGONAUTE1
-
Schott G, Mari-Ordonez A, Himber C, Alioua A, Voinnet O, Dunoyer P (2012) Differential effects of viral silencing suppressors on siRNA and miRNA loading support the existence of two distinct cellular pools of ARGONAUTE1. EMBO J 31: 2553-2565.
-
(2012)
EMBO J
, vol.31
, pp. 2553-2565
-
-
Schott, G.1
Mari-Ordonez, A.2
Himber, C.3
Alioua, A.4
Voinnet, O.5
Dunoyer, P.6
-
129
-
-
26944466621
-
An RNA-dependent RNA polymerase prevents meristem invasion by potato virus X and is required for the activity but not the production of a systemic silencing signal
-
Schwach F, Vaistij FE, Jones L, Baulcombe DC (2005) An RNA-dependent RNA polymerase prevents meristem invasion by potato virus X and is required for the activity but not the production of a systemic silencing signal. Plant Physiol 138: 1842-1852.
-
(2005)
Plant Physiol
, vol.138
, pp. 1842-1852
-
-
Schwach, F.1
Vaistij, F.E.2
Jones, L.3
Baulcombe, D.C.4
-
130
-
-
10744225153
-
Asymmetry in the assembly of the RNAi enzyme complex
-
Schwarz DS, Hutvagner G, Du T, Xu Z, Aronin N, Zamore PD (2003) Asymmetry in the assembly of the RNAi enzyme complex. Cell 115: 199-208.
-
(2003)
Cell
, vol.115
, pp. 199-208
-
-
Schwarz, D.S.1
Hutvagner, G.2
Du, T.3
Xu, Z.4
Aronin, N.5
Zamore, P.D.6
-
131
-
-
84860126087
-
A microRNA super family regulates nucleotide binding site-leucine-rich repeats and other mRNAs
-
Shivaprasad PV, Chen H-M, Patel K, Bond DM, Santos BA, Baulcombe DC (2012) A microRNA super family regulates nucleotide binding site-leucine-rich repeats and other mRNAs. Plant Cell 24: 859-874.
-
(2012)
Plant Cell
, vol.24
, pp. 859-874
-
-
Shivaprasad, P.V.1
Chen, H.-M.2
Patel, K.3
Bond, D.M.4
Santos, B.A.5
Baulcombe, D.C.6
-
132
-
-
33947303168
-
Transposable elements and the epigenetic regulation of the genome
-
Slotkin RK, Martienssen R (2007) Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet 8: 272-285.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 272-285
-
-
Slotkin, R.K.1
Martienssen, R.2
-
133
-
-
0345490960
-
The crystal structure of the Argonaute Paz domain reveals an RNA binding motif in RNAi effector complexes
-
Song JJ, Liu J, Tolia NH, Schneiderman J, Smith SK, Martienssen RA, Hannon GJ, Joshua-Tor L (2003) The crystal structure of the Argonaute Paz domain reveals an RNA binding motif in RNAi effector complexes. Nature Struct Biol 10: 1026-1032.
-
(2003)
Nature Struct Biol
, vol.10
, pp. 1026-1032
-
-
Song, J.J.1
Liu, J.2
Tolia, N.H.3
Schneiderman, J.4
Smith, S.K.5
Martienssen, R.A.6
Hannon, G.J.7
Joshua-Tor, L.8
-
134
-
-
4444302947
-
Crystal structure of Argonaute and its implications for RISC slicer activity
-
Song J-J, Smith SK, Hannon GJ, Joshua-Tor L (2004) Crystal structure of Argonaute and its implications for RISC slicer activity. Science 305: 1434-1437.
-
(2004)
Science
, vol.305
, pp. 1434-1437
-
-
Song, J.-J.1
Smith, S.K.2
Hannon, G.J.3
Joshua-Tor, L.4
-
135
-
-
84856288115
-
Roles of DCL4 and DCL3b in rice phased small RNA biogenesis
-
Song X, Li P, Zhai J, Zhou M, Ma L, Liu B, Jeong D-H, Nakano M, Cao S, Liu C, Chu C, Wang X-J, Green P-J, Meyers BC, Cao X (2012) Roles of DCL4 and DCL3b in rice phased small RNA biogenesis. Plant J 69: 462-474.
-
(2012)
Plant J
, vol.69
, pp. 462-474
-
-
Song, X.1
Li, P.2
Zhai, J.3
Zhou, M.4
Ma, L.5
Liu, B.6
Jeong, D.-H.7
Nakano, M.8
Cao, S.9
Liu, C.10
Chu, C.11
Wang, X.-J.12
Green, P.-J.13
Meyers, B.C.14
Cao, X.15
-
136
-
-
84865423928
-
MicroRNAs and their diverse functions in plants
-
Sun G (2012) MicroRNAs and their diverse functions in plants. Plant Mol Biol 80: 17-36.
-
(2012)
Plant Mol Biol
, vol.80
, pp. 17-36
-
-
Sun, G.1
-
137
-
-
4043074968
-
Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
-
Sunkar R, Zhu JK (2004) Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell 16: 2001-2019.
-
(2004)
Plant Cell
, vol.16
, pp. 2001-2019
-
-
Sunkar, R.1
Zhu, J.K.2
-
139
-
-
44349094874
-
The mechanism selecting the guide strand from small RNA duplexes is different among Argonaute proteins
-
Takeda A, Iwasaki S, Watanabe T, Utsumi M, Watanabe Y (2008) The mechanism selecting the guide strand from small RNA duplexes is different among Argonaute proteins. Plant Cell Physiol 49: 493-500.
-
(2008)
Plant Cell Physiol
, vol.49
, pp. 493-500
-
-
Takeda, A.1
Iwasaki, S.2
Watanabe, T.3
Utsumi, M.4
Watanabe, Y.5
-
141
-
-
2442479896
-
DNA and histone methylation in plants
-
Tariq M, Paszkowski J (2004) DNA and histone methylation in plants. Trends Genet 20: 244-251.
-
(2004)
Trends Genet
, vol.20
, pp. 244-251
-
-
Tariq, M.1
Paszkowski, J.2
-
142
-
-
77957328824
-
A collection of target mimics for comprehensive analysis of microRNA function in Arabidopsis thaliana
-
Todesco M, Rubio-Somoza I, Paz-Ares J, Weigel D (2010) A collection of target mimics for comprehensive analysis of microRNA function in Arabidopsis thaliana. PLoS Genet 6: e1001031.
-
(2010)
PLoS Genet
, vol.6
-
-
Todesco, M.1
Rubio-Somoza, I.2
Paz-Ares, J.3
Weigel, D.4
-
143
-
-
33644861343
-
An active DNA transposon nDart causing leaf variegation and mutable dwarfism and its related elements in rice
-
Tsugane K, Maekawa M, Takagi K, Takahara H, Qian Q, Eun C-H, Iida S (2006) An active DNA transposon nDart causing leaf variegation and mutable dwarfism and its related elements in rice. Plant J 45: 46-57.
-
(2006)
Plant J
, vol.45
, pp. 46-57
-
-
Tsugane, K.1
Maekawa, M.2
Takagi, K.3
Takahara, H.4
Qian, Q.5
Eun, C.-H.6
Iida, S.7
-
144
-
-
70349276670
-
Bursts of retrotransposition reproduced in Arabidopsis
-
Tsukahara S, Kobayashi A, Kawabe A, Mathieu O, Miura A, Kakutani T (2009) Bursts of retrotransposition reproduced in Arabidopsis. Nature 461: 423-426.
-
(2009)
Nature
, vol.461
, pp. 423-426
-
-
Tsukahara, S.1
Kobayashi, A.2
Kawabe, A.3
Mathieu, O.4
Miura, A.5
Kakutani, T.6
-
145
-
-
0035999373
-
Spreading of RNA targeting and DNA methylation in RNA silencing requires transcription of the target gene and a putative RNA-dependent RNA polymerase
-
Vaistij FE, Jones L, Baulcombe DC (2002) Spreading of RNA targeting and DNA methylation in RNA silencing requires transcription of the target gene and a putative RNA-dependent RNA polymerase. Plant Cell 14: 857-867.
-
(2002)
Plant Cell
, vol.14
, pp. 857-867
-
-
Vaistij, F.E.1
Jones, L.2
Baulcombe, D.C.3
-
146
-
-
0347985826
-
Size selective recognition of siRNA by an RNA silencing suppressor
-
Vargason JM, Szittya G, Burgyan J, Tanaka Hall TM (2003) Size selective recognition of siRNA by an RNA silencing suppressor. Cell 115: 799-811.
-
(2003)
Cell
, vol.115
, pp. 799-811
-
-
Vargason, J.M.1
Szittya, G.2
Burgyan, J.3
Tanaka Hall, T.M.4
-
147
-
-
33645528966
-
Post-transcriptional small RNA pathways in plants: mechanisms and regulation
-
Vaucheret H (2006) Post-transcriptional small RNA pathways in plants: mechanisms and regulation. Genes Dev 20: 759-771.
-
(2006)
Genes Dev
, vol.20
, pp. 759-771
-
-
Vaucheret, H.1
-
148
-
-
46149088681
-
Plant Argonautes
-
Vaucheret H (2008) Plant Argonautes. Trends Plant Sci 13: 350-358.
-
(2008)
Trends Plant Sci
, vol.13
, pp. 350-358
-
-
Vaucheret, H.1
-
149
-
-
1542350745
-
The nuclear dsRNA binding protein HYL1 is required for microRNA accumulation and plant development, but not posttranscriptional transgene silencing
-
Vazquez F, Gasciolli V, Crete P, Vaucheret H (2004) The nuclear dsRNA binding protein HYL1 is required for microRNA accumulation and plant development, but not posttranscriptional transgene silencing. Curr Biol 14: 346-351.
-
(2004)
Curr Biol
, vol.14
, pp. 346-351
-
-
Vazquez, F.1
Gasciolli, V.2
Crete, P.3
Vaucheret, H.4
-
150
-
-
46149095029
-
Use, tolerance and avoidance of amplified RNA silencing by plants
-
Voinnet O (2008) Use, tolerance and avoidance of amplified RNA silencing by plants. Trends Plant Sci 13: 317-328.
-
(2008)
Trends Plant Sci
, vol.13
, pp. 317-328
-
-
Voinnet, O.1
-
151
-
-
60149086351
-
Origin, biogenesis, and activity of plant microRNAs
-
Voinnet O (2009) Origin, biogenesis, and activity of plant microRNAs. Cell 136: 669-687.
-
(2009)
Cell
, vol.136
, pp. 669-687
-
-
Voinnet, O.1
-
152
-
-
79957761869
-
The 21-nucleotide, but not 22-nucleotide, viral secondary small interfering RNAs direct potent antiviral defense by two cooperative argonautes in Arabidopsis thaliana
-
Wang XB, Jovel J, Udomporn P, Wang Y, Wu Q, Li WX, Gasciolli V, Vaucheret H, Ding SW (2011) The 21-nucleotide, but not 22-nucleotide, viral secondary small interfering RNAs direct potent antiviral defense by two cooperative argonautes in Arabidopsis thaliana. Plant Cell 23: 1625-1638.
-
(2011)
Plant Cell
, vol.23
, pp. 1625-1638
-
-
Wang, X.B.1
Jovel, J.2
Udomporn, P.3
Wang, Y.4
Wu, Q.5
Li, W.X.6
Gasciolli, V.7
Vaucheret, H.8
Ding, S.W.9
-
153
-
-
55449131096
-
Noncoding transcription by RNA polymerase IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes
-
Wiezbicki AT, Haag JR, Pikaard CS (2008) Noncoding transcription by RNA polymerase IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes. Cell 135: 635-648.
-
(2008)
Cell
, vol.135
, pp. 635-648
-
-
Wiezbicki, A.T.1
Haag, J.R.2
Pikaard, C.S.3
-
154
-
-
24944443408
-
Regulation of Arabidopsis shoot apical meristem and lateral organ formation by microRNA miR166g and its AtHD-ZIP target genes
-
Williams L, Grigg SP, Xie M, Christensen S, Fletcher JC (2005) Regulation of Arabidopsis shoot apical meristem and lateral organ formation by microRNA miR166g and its AtHD-ZIP target genes. Development 132: 3657-3668.
-
(2005)
Development
, vol.132
, pp. 3657-3668
-
-
Williams, L.1
Grigg, S.P.2
Xie, M.3
Christensen, S.4
Fletcher, J.C.5
-
155
-
-
61849137222
-
Many roads to maturity: microRNA biogenesis pathways and their regulation
-
Winter J, Jung S, Keller S, Gregory RI, Diederichs S (2009) Many roads to maturity: microRNA biogenesis pathways and their regulation. Nat Cell Biol 11: 228-234.
-
(2009)
Nat Cell Biol
, vol.11
, pp. 228-234
-
-
Winter, J.1
Jung, S.2
Keller, S.3
Gregory, R.I.4
Diederichs, S.5
-
156
-
-
0037068470
-
SINAT5 promotes ubiquitin-related degradation of NAC1 to attenuate auxin signals
-
Xie Q, Guo H-S, Dallman G, Fang S, Weissman AM, Chua N-H (2002) SINAT5 promotes ubiquitin-related degradation of NAC1 to attenuate auxin signals. Nature 419: 167-170.
-
(2002)
Nature
, vol.419
, pp. 167-170
-
-
Xie, Q.1
Guo, H.-S.2
Dallman, G.3
Fang, S.4
Weissman, A.M.5
Chua, N.-H.6
-
157
-
-
0038076109
-
Negative feedback regulation of Dicer-like1 in Arabidopsis by microRNA-guided mRNA degradation
-
Xie Z, Kasschau KD, Carrington JC (2003) Negative feedback regulation of Dicer-like1 in Arabidopsis by microRNA-guided mRNA degradation. Curr Biol 13: 784-789.
-
(2003)
Curr Biol
, vol.13
, pp. 784-789
-
-
Xie, Z.1
Kasschau, K.D.2
Carrington, J.C.3
-
158
-
-
19344374219
-
Genetic and functional diversification of small RNA pathways in plants
-
Xie Z, Johansen LK, Gustafson AM, Kasschau KD, Lellis AD, Zilberman D, Jacobsen SE, Carrington JC (2004) Genetic and functional diversification of small RNA pathways in plants. PLoS Biol 2: e104.
-
(2004)
PLoS Biol
, vol.2
-
-
Xie, Z.1
Johansen, L.K.2
Gustafson, A.M.3
Kasschau, K.D.4
Lellis, A.D.5
Zilberman, D.6
Jacobsen, S.E.7
Carrington, J.C.8
-
159
-
-
24644481318
-
DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana
-
Xie Z, Allen E, Wilken A, Carrington JC (2005a) DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana. Proc Natl Acad Sci U S A 102: 12984-12989.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 12984-12989
-
-
Xie, Z.1
Allen, E.2
Wilken, A.3
Carrington, J.C.4
-
160
-
-
29144528351
-
Expression of Arabidopsis miRNA genes
-
Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC (2005b) Expression of Arabidopsis miRNA genes. Plant Physiol 138: 2145-2154.
-
(2005)
Plant Physiol
, vol.138
, pp. 2145-2154
-
-
Xie, Z.1
Allen, E.2
Fahlgren, N.3
Calamar, A.4
Givan, S.A.5
Carrington, J.C.6
-
161
-
-
0642345790
-
Structure and conserved RNA binding of the PAZ domain
-
Yan KS, Yan S, Farooq A, Han A, Zeng L, Zhou M-M (2003) Structure and conserved RNA binding of the PAZ domain. Nature 426: 469-474.
-
(2003)
Nature
, vol.426
, pp. 469-474
-
-
Yan, K.S.1
Yan, S.2
Farooq, A.3
Han, A.4
Zeng, L.5
Zhou, M.-M.6
-
162
-
-
51749111395
-
Roles of microRNA in plant defense and virus offense interaction
-
Yan L, Gan Q, Chi X, Qin S (2008) Roles of microRNA in plant defense and virus offense interaction. Plant Cell Rep 27: 1571-1579.
-
(2008)
Plant Cell Rep
, vol.27
, pp. 1571-1579
-
-
Yan, L.1
Gan, Q.2
Chi, X.3
Qin, S.4
-
163
-
-
32644454064
-
HEN1 recognizes 21-24 nt small RNA duplexes and deposits a methyl group onto the 2′ OH of the 3′ terminal nucleotide
-
Yang Z, Ebright YW, Yu B, Chen X (2006) HEN1 recognizes 21-24 nt small RNA duplexes and deposits a methyl group onto the 2′ OH of the 3′ terminal nucleotide. Nucleic Acids Res 34: 667-675.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 667-675
-
-
Yang, Z.1
Ebright, Y.W.2
Yu, B.3
Chen, X.4
-
164
-
-
0347357615
-
Recognition of small interfering RNA by a viral suppressor of RNA silencing
-
Ye K, Malinina L, Patel DJ (2003) Recognition of small interfering RNA by a viral suppressor of RNA silencing. Nat 426: 874-878.
-
(2003)
Nat
, vol.426
, pp. 874-878
-
-
Ye, K.1
Malinina, L.2
Patel, D.J.3
-
165
-
-
4043130331
-
A systemic small RNA signaling system in plants
-
Yoo B-C, Kragler F, Varkonyi-Gasic E, Haywood V, Archer-Evans S, Lee YM, Lough TJ, Lucas WJ (2004) A systemic small RNA signaling system in plants. Plant Cell 16: 1979-2000.
-
(2004)
Plant Cell
, vol.16
, pp. 1979-2000
-
-
Yoo, B.-C.1
Kragler, F.2
Varkonyi-Gasic, E.3
Haywood, V.4
Archer-Evans, S.5
Lee, Y.M.6
Lough, T.J.7
Lucas, W.J.8
-
166
-
-
24944491201
-
A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis
-
Yoshikawa M, Peragine A, Park MY, Poethig RS (2005) A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis. Genes Dev 19: 2164-2175.
-
(2005)
Genes Dev
, vol.19
, pp. 2164-2175
-
-
Yoshikawa, M.1
Peragine, A.2
Park, M.Y.3
Poethig, R.S.4
-
167
-
-
77952089898
-
Complexity and specificity of precursor microRNAs driven by transposable elements in rice
-
Yu S, Li J, Luo L (2010) Complexity and specificity of precursor microRNAs driven by transposable elements in rice. Plant Mol Biol Rep 28: 502-511.
-
(2010)
Plant Mol Biol Rep
, vol.28
, pp. 502-511
-
-
Yu, S.1
Li, J.2
Luo, L.3
-
168
-
-
77952355762
-
Genome-wide evolutionary analysis of eukaryotic DNA methylation
-
Zemach A, McDaniel IE, Silva P, Zilberman D (2010) Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science 328: 916-919.
-
(2010)
Science
, vol.328
, pp. 916-919
-
-
Zemach, A.1
McDaniel, I.E.2
Silva, P.3
Zilberman, D.4
-
169
-
-
33845391778
-
Cucumber mosaic virus-encoded 2b suppressor inhibits Arabidopsis Argonaute1 cleavage activity to counter plant defense
-
Zhang X, Yuan YR, Pei Y, Lin SS, Tuschl T, Patel DJ, Chua NH (2006) Cucumber mosaic virus-encoded 2b suppressor inhibits Arabidopsis Argonaute1 cleavage activity to counter plant defense. Genes Dev 20: 3255-3268.
-
(2006)
Genes Dev
, vol.20
, pp. 3255-3268
-
-
Zhang, X.1
Yuan, Y.R.2
Pei, Y.3
Lin, S.S.4
Tuschl, T.5
Patel, D.J.6
Chua, N.H.7
-
170
-
-
79955499404
-
Arabidopsis Argonaute 2 regulates innate immunity via miRNA393*-mediated silencing of a golgi-localized SNARE gene, MEMB12
-
Zhang X, Zhao H, Gao S, Wang W-C, Katiyar-Agarwal S, Huang H-D, Raikhel N, Jin H (2011) Arabidopsis Argonaute 2 regulates innate immunity via miRNA393*-mediated silencing of a golgi-localized SNARE gene, MEMB12. Mol Cell 42: 356-366.
-
(2011)
Mol Cell
, vol.42
, pp. 356-366
-
-
Zhang, X.1
Zhao, H.2
Gao, S.3
Wang, W.-C.4
Katiyar-Agarwal, S.5
Huang, H.-D.6
Raikhel, N.7
Jin, H.8
-
171
-
-
34047234690
-
Characterization and identification of microRNA core promoters in four model species
-
Zhou X, Ruan J, Wang G, Zhang W (2007) Characterization and identification of microRNA core promoters in four model species. PLoS Comput Biol 3: e37.
-
(2007)
PLoS Comput Biol
, vol.3
-
-
Zhou, X.1
Ruan, J.2
Wang, G.3
Zhang, W.4
-
172
-
-
79251611109
-
Identification and characterization of novel microRNAs from Populus cathayana Rehd
-
Zhou J, Zhuo R, Liu M, Qiao G, Jiang J, Li H, Qiu W, Zhang X, Lin S (2011) Identification and characterization of novel microRNAs from Populus cathayana Rehd. Plant Mol Biol Rep 29: 242-251.
-
(2011)
Plant Mol Biol Rep
, vol.29
, pp. 242-251
-
-
Zhou, J.1
Zhuo, R.2
Liu, M.3
Qiao, G.4
Jiang, J.5
Li, H.6
Qiu, W.7
Zhang, X.8
Lin, S.9
-
173
-
-
79953857473
-
Arabidopsis Argonaute10 specifically sequesters miR166/165 to regulate shoot apical meristem development
-
Zhu H, Hu F, Wang R, Zhou X, Sze SH, Liou LW, Barefoot A, Dickman M, Zhang X (2011) Arabidopsis Argonaute10 specifically sequesters miR166/165 to regulate shoot apical meristem development. Cell 145: 242-256.
-
(2011)
Cell
, vol.145
, pp. 242-256
-
-
Zhu, H.1
Hu, F.2
Wang, R.3
Zhou, X.4
Sze, S.H.5
Liou, L.W.6
Barefoot, A.7
Dickman, M.8
Zhang, X.9
-
174
-
-
51649098663
-
The evolving functions of DNA methylation
-
Zilberman D (2008) The evolving functions of DNA methylation. Curr Opin Plant Biol 11: 554-559.
-
(2008)
Curr Opin Plant Biol
, vol.11
, pp. 554-559
-
-
Zilberman, D.1
-
175
-
-
0037474126
-
Argonaute4 control of locus-specific siRNA accumulation and DNA histone methylation
-
Zilberman D, Cao X, Jacobsen SE (2003) Argonaute4 control of locus-specific siRNA accumulation and DNA histone methylation. Science 299: 716-719.
-
(2003)
Science
, vol.299
, pp. 716-719
-
-
Zilberman, D.1
Cao, X.2
Jacobsen, S.E.3
|