-
1
-
-
9644272448
-
Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana
-
Allen, E., Xie, Z., Gustafson, A.M., Sung, G.H., Spatafora, J.W., and Carrington, J.C. 2004. Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana. Nat. Genet. 36: 1282-1290.
-
(2004)
Nat. Genet.
, vol.36
, pp. 1282-1290
-
-
Allen, E.1
Xie, Z.2
Gustafson, A.M.3
Sung, G.H.4
Spatafora, J.W.5
Carrington, J.C.6
-
2
-
-
17444430392
-
microRNA-directed phasing during trans-acting siRNA biogenesis in plants
-
Allen, E., Xie, Z., Gustafson, A.M., and Carrington, J.C. 2005. microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 121: 207-221.
-
(2005)
Cell
, vol.121
, pp. 207-221
-
-
Allen, E.1
Xie, Z.2
Gustafson, A.M.3
Carrington, J.C.4
-
3
-
-
4644309196
-
The functions of animal microRNAs
-
Ambros, V. 2004. The functions of animal microRNAs. Nature 431: 350-355.
-
(2004)
Nature
, vol.431
, pp. 350-355
-
-
Ambros, V.1
-
4
-
-
0037737975
-
MicroRNAs and other tiny endogenous RNAs in C. elegans
-
Ambros, V., Lee, R.C., Lavanway, A., Williams, P.T., and Jewell, D. 2003. MicroRNAs and other tiny endogenous RNAs in C. elegans. Curr. Biol. 13: 807-818.
-
(2003)
Curr. Biol.
, vol.13
, pp. 807-818
-
-
Ambros, V.1
Lee, R.C.2
Lavanway, A.3
Williams, P.T.4
Jewell, D.5
-
5
-
-
0035838369
-
Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline
-
Aravin, A.A., Naumova, N.M., Tulin, A.V., Vagin, V.V., Rozovsky, Y.M., and Gvozdev, V.A. 2001. Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline. Curr. Biol. 11: 1017-1027.
-
(2001)
Curr. Biol.
, vol.11
, pp. 1017-1027
-
-
Aravin, A.A.1
Naumova, N.M.2
Tulin, A.V.3
Vagin, V.V.4
Rozovsky, Y.M.5
Gvozdev, V.A.6
-
6
-
-
0041941514
-
The small RNA profile during Drosophila melanogaster development
-
Aravin, A.A., Lagos-Quintana, M., Yalcin, A., Zavolan, M., Marks, D., Snyder, B., Gaasterland, T., Meyer, J., and Tuschl, T. 2003. The small RNA profile during Drosophila melanogaster development. Dev. Cell 5: 337-350.
-
(2003)
Dev. Cell
, vol.5
, pp. 337-350
-
-
Aravin, A.A.1
Lagos-Quintana, M.2
Yalcin, A.3
Zavolan, M.4
Marks, D.5
Snyder, B.6
Gaasterland, T.7
Meyer, J.8
Tuschl, T.9
-
7
-
-
7744223490
-
MicroRNA binding sites in Arabidopsis class III HD-ZIP mRNAs are required for methylation of the template chromosome
-
Bao, N., Lye, N.W., and Barton, M.K. 2004. MicroRNA binding sites in Arabidopsis class III HD-ZIP mRNAs are required for methylation of the template chromosome. Dev. Cell 7: 653-662.
-
(2004)
Dev. Cell
, vol.7
, pp. 653-662
-
-
Bao, N.1
Lye, N.W.2
Barton, M.K.3
-
8
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
Bartel, D.P. 2004. MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
9
-
-
0041532677
-
The SGS3 protein involved in PTGS finds a family
-
Bateman, A. 2002. The SGS3 protein involved in PTGS finds a family. BMC Bioinformatics 3: 21.
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 21
-
-
Bateman, A.1
-
10
-
-
0037117416
-
A branched pathway for transgene-induced RNA silencing in plants
-
Beclin, C., Boutet, S., Waterhouse, P., and Vaucheret, H. 2002. A branched pathway for transgene-induced RNA silencing in plants. Curr. Biol. 12: 684-688.
-
(2002)
Curr. Biol.
, vol.12
, pp. 684-688
-
-
Beclin, C.1
Boutet, S.2
Waterhouse, P.3
Vaucheret, H.4
-
11
-
-
4043067987
-
RNAi-dependent and RNAi-independent mechanisms contribute to the silencing of RIPed sequences in Neurospora crassa
-
Chicas, A., Cogoni, C., and Macino, G. 2004. RNAi-dependent and RNAi-independent mechanisms contribute to the silencing of RIPed sequences in Neurospora crassa. Nucleic Acids Res. 32: 4237-4243.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 4237-4243
-
-
Chicas, A.1
Cogoni, C.2
Macino, G.3
-
12
-
-
0030940846
-
Messenger RNA deadenylylation precedes decapping in mammalian cells
-
Couttet, P., Fromont-Racine, M., Steel, D., Pictet, R., and Grange, T. 1997. Messenger RNA deadenylylation precedes decapping in mammalian cells. Proc. Natl. Acad. Sci. 94: 5628-5633.
-
(1997)
Proc. Natl. Acad. Sci.
, vol.94
, pp. 5628-5633
-
-
Couttet, P.1
Fromont-Racine, M.2
Steel, D.3
Pictet, R.4
Grange, T.5
-
13
-
-
0034103861
-
Potato virus X amplicons in Arabidopsis mediate genetic and epigenetic gene silencing
-
Dalmay, T., Hamilton, A., Mueller, E., and Baulcombe, D.C. 2000a. Potato virus X amplicons in Arabidopsis mediate genetic and epigenetic gene silencing. Plant Cell 12: 369-379.
-
(2000)
Plant Cell
, vol.12
, pp. 369-379
-
-
Dalmay, T.1
Hamilton, A.2
Mueller, E.3
Baulcombe, D.C.4
-
14
-
-
0034716924
-
An RNA-dependent RNA polymerase gene in Arabidopsis is required for posttranscriptional gene silencing mediated by a transgene but not by a virus
-
Dalmay, T., Hamilton, A., Rudd, S., Angell, S., and Baulcombe, D.C. 2000b. An RNA-dependent RNA polymerase gene in Arabidopsis is required for posttranscriptional gene silencing mediated by a transgene but not by a virus. Cell 101: 543-553.
-
(2000)
Cell
, vol.101
, pp. 543-553
-
-
Dalmay, T.1
Hamilton, A.2
Rudd, S.3
Angell, S.4
Baulcombe, D.C.5
-
15
-
-
9144224451
-
Processing of primary microRNAs by the Microprocessor complex
-
Denli, A.M., Tops, B.B., Plasterk, R.H., Ketting, R.F., and Hannon, G.J. 2004. Processing of primary microRNAs by the Microprocessor complex. Nature 432: 231-235.
-
(2004)
Nature
, vol.432
, pp. 231-235
-
-
Denli, A.M.1
Tops, B.B.2
Plasterk, R.H.3
Ketting, R.F.4
Hannon, G.J.5
-
16
-
-
0035160923
-
RNA interference in Trypanosoma brucei: Cloning of small interfering RNAs provides evidence for retroposon-derived 24-26-nucleotide RNAs
-
Djikeng, A., Shi, H., Tschudi, C., and Ullu, E. 2001. RNA interference in Trypanosoma brucei: Cloning of small interfering RNAs provides evidence for retroposon-derived 24-26-nucleotide RNAs. RNA 7: 1522-1530.
-
(2001)
RNA
, vol.7
, pp. 1522-1530
-
-
Djikeng, A.1
Shi, H.2
Tschudi, C.3
Ullu, E.4
-
17
-
-
0035863097
-
RNA interference is mediated by 21- and 22-nucleotide RNAs
-
Elbashir, S.M., Lendeckel, W., and Tuschl, T. 2001. RNA interference is mediated by 21- and 22-nucleotide RNAs. Genes & Dev. 15: 188-200.
-
(2001)
Genes & Dev.
, vol.15
, pp. 188-200
-
-
Elbashir, S.M.1
Lendeckel, W.2
Tuschl, T.3
-
18
-
-
0037316517
-
Posttranscriptional gene silencing is not compromised in the Arabidopsis CARPEL FACTORY (DICER-LIKE1) mutant, a homolog of Dicer-1 from Drosophila
-
Finnegan, E.J., Margis, R., and Waterhouse, P.M. 2003. Posttranscriptional gene silencing is not compromised in the Arabidopsis CARPEL FACTORY (DICER-LIKE1) mutant, a homolog of Dicer-1 from Drosophila. Curr. Biol. 13: 236-240.
-
(2003)
Curr. Biol.
, vol.13
, pp. 236-240
-
-
Finnegan, E.J.1
Margis, R.2
Waterhouse, P.M.3
-
19
-
-
8344240473
-
A link between mRNA turnover and RNA interference in Arabidopsis
-
Gazzani, S., Lawrenson, T., Woodward, C., Headon, D., and Sablowski, R. 2004. A link between mRNA turnover and RNA interference in Arabidopsis. Science 306: 1046-1048.
-
(2004)
Science
, vol.306
, pp. 1046-1048
-
-
Gazzani, S.1
Lawrenson, T.2
Woodward, C.3
Headon, D.4
Sablowski, R.5
-
20
-
-
0036801731
-
SHORT INTEGUMENTS1/SUSPENSOR1/CARPEL FACTORY, a Dicer homolog, is a maternal effect gene required for embryo development in Arabidopsis
-
Golden, T.A., Schauer, S.E., Lang, J.D., Pien, S., Mushegian, A.R., Grossniklaus, U., Meinke, D.W., and Ray, A. 2002. SHORT INTEGUMENTS1/SUSPENSOR1/ CARPEL FACTORY, a Dicer homolog, is a maternal effect gene required for embryo development in Arabidopsis. Plant Physiol. 130: 808-822.
-
(2002)
Plant Physiol.
, vol.130
, pp. 808-822
-
-
Golden, T.A.1
Schauer, S.E.2
Lang, J.D.3
Pien, S.4
Mushegian, A.R.5
Grossniklaus, U.6
Meinke, D.W.7
Ray, A.8
-
21
-
-
11144351051
-
Uncoupling of RNAi from active translation in mammalian cells
-
Gu, S. and Rossi, J.J. 2005. Uncoupling of RNAi from active translation in mammalian cells. RNA 11: 38-44.
-
(2005)
RNA
, vol.11
, pp. 38-44
-
-
Gu, S.1
Rossi, J.J.2
-
22
-
-
13444256465
-
ASRP: The Arabidopsis Small RNA Project Database
-
Gustafson, A.M., Allen, E., Givan, S., Smith, D., Carrington, J.C., and Kasschau, K.D. 2005. ASRP: The Arabidopsis Small RNA Project Database. Nucleic Acids Res. 33: D637-D640.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Gustafson, A.M.1
Allen, E.2
Givan, S.3
Smith, D.4
Carrington, J.C.5
Kasschau, K.D.6
-
23
-
-
0033615491
-
A species of small antisense RNA in posttranscriptional gene silencing in plants
-
Hamilton, A.J. and Baulcombe, D.C. 1999. A species of small antisense RNA in posttranscriptional gene silencing in plants. Science 286: 950-952.
-
(1999)
Science
, vol.286
, pp. 950-952
-
-
Hamilton, A.J.1
Baulcombe, D.C.2
-
24
-
-
0037009520
-
Two classes of short interfering RNA in RNA silencing
-
Hamilton, A., Voinnet, O., Chappell, L., and Baulcombe, D. 2002. Two classes of short interfering RNA in RNA silencing. EMBO J. 21: 4671-4679.
-
(2002)
EMBO J.
, vol.21
, pp. 4671-4679
-
-
Hamilton, A.1
Voinnet, O.2
Chappell, L.3
Baulcombe, D.4
-
25
-
-
0742323351
-
The Arabidopsis double-stranded RNA-binding protein HYL1 plays a role in microRNA-mediated gene regulation
-
Han, M.H., Goud, S., Song, L., and Fedoroff, N. 2004. The Arabidopsis double-stranded RNA-binding protein HYL1 plays a role in microRNA-mediated gene regulation. Proc. Natl. Acad. Sci. 101: 1093-1098.
-
(2004)
Proc. Natl. Acad. Sci.
, vol.101
, pp. 1093-1098
-
-
Han, M.H.1
Goud, S.2
Song, L.3
Fedoroff, N.4
-
26
-
-
14844295120
-
RNA polymerase IV directs silencing of endogenous DNA
-
Herr, A.J., Jensen, M.B., Dalmay, T., and Baulcombe, D.C. 2005. RNA polymerase IV directs silencing of endogenous DNA. Science 308: 118-120.
-
(2005)
Science
, vol.308
, pp. 118-120
-
-
Herr, A.J.1
Jensen, M.B.2
Dalmay, T.3
Baulcombe, D.C.4
-
27
-
-
0042738082
-
Transitivity-dependent and -independent cell-to-cell movement of RNA silencing
-
Himber, C., Dunoyer, P., Moissiard, G., Ritzenthaler, C., and Voinnet, O. 2003. Transitivity-dependent and -independent cell-to-cell movement of RNA silencing. EMBO J. 22: 4523-4533.
-
(2003)
EMBO J.
, vol.22
, pp. 4523-4533
-
-
Himber, C.1
Dunoyer, P.2
Moissiard, G.3
Ritzenthaler, C.4
Voinnet, O.5
-
28
-
-
20244378840
-
Specific interactions between Dicer-like proteins and HYL1/DRB-family dsRNA-binding proteins in Arabidopsis thaliana
-
Hiraguri, A., Itoh, R., Kondo, N., Nomura, Y., Aizawa, D., Murai, Y., Koiwa, H., Seki, M., Shinozaki, K., and Fukuhara, T. 2005. Specific interactions between Dicer-like proteins and HYL1/DRB-family dsRNA-binding proteins in Arabidopsis thaliana. Plant Mol. Biol. 57: 173-188.
-
(2005)
Plant Mol. Biol.
, vol.57
, pp. 173-188
-
-
Hiraguri, A.1
Itoh, R.2
Kondo, N.3
Nomura, Y.4
Aizawa, D.5
Murai, Y.6
Koiwa, H.7
Seki, M.8
Shinozaki, K.9
Fukuhara, T.10
-
29
-
-
0037320231
-
P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA function
-
Kasschau, K.D., Xie, Z., Allen, E., Llave, C., Chapman, E.J., Krizan, K.A., and Carrington, J.C. 2003. P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA function. Dev. Cell 4: 205-217.
-
(2003)
Dev. Cell
, vol.4
, pp. 205-217
-
-
Kasschau, K.D.1
Xie, Z.2
Allen, E.3
Llave, C.4
Chapman, E.J.5
Krizan, K.A.6
Carrington, J.C.7
-
30
-
-
0035887005
-
Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans
-
Ketting, R.F., Fischer, S.E., Bernstein, E., Sijen, T., Hannon, G.J., and Plasterk, R.H. 2001. Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans. Genes & Dev. 15: 2654-2659.
-
(2001)
Genes & Dev.
, vol.15
, pp. 2654-2659
-
-
Ketting, R.F.1
Fischer, S.E.2
Bernstein, E.3
Sijen, T.4
Hannon, G.J.5
Plasterk, R.H.6
-
32
-
-
0027751663
-
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
-
Lee, R.C., Feinbaum, R.L., and Ambros, V. 1993. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 75: 843-854.
-
(1993)
Cell
, vol.75
, pp. 843-854
-
-
Lee, R.C.1
Feinbaum, R.L.2
Ambros, V.3
-
33
-
-
1842816517
-
Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways
-
Lee, Y.S., Nakahara, K., Pham, J.W., Kim, K., He, Z., Sontheimer, E.J., and Carthew, R.W. 2004. Distinct roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA silencing pathways. Cell 117: 69-81.
-
(2004)
Cell
, vol.117
, pp. 69-81
-
-
Lee, Y.S.1
Nakahara, K.2
Pham, J.W.3
Kim, K.4
He, Z.5
Sontheimer, E.J.6
Carthew, R.W.7
-
34
-
-
0027381917
-
Mapping the 5′ and 3′ ends of Tetrahymena thermophila mRNAs using RNA ligase mediated amplification of cDNA ends (RLM-RACE)
-
Liu, X. and Gorovsky, M.A. 1993. Mapping the 5′ and 3′ ends of Tetrahymena thermophila mRNAs using RNA ligase mediated amplification of cDNA ends (RLM-RACE). Nucleic Acids Res. 21: 4954-4960.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 4954-4960
-
-
Liu, X.1
Gorovsky, M.A.2
-
35
-
-
0141868916
-
R2D2, a bridge between the initiation and effector steps of the Drosophila RNAi pathway
-
Liu, Q., Rand, T.A., Kalidas, S., Du, F., Kim, H.E., Smith, D.P., and Wang, X. 2003. R2D2, a bridge between the initiation and effector steps of the Drosophila RNAi pathway. Science 301: 1921-1925.
-
(2003)
Science
, vol.301
, pp. 1921-1925
-
-
Liu, Q.1
Rand, T.A.2
Kalidas, S.3
Du, F.4
Kim, H.E.5
Smith, D.P.6
Wang, X.7
-
36
-
-
10044244768
-
siRNAs targeting an intronic transposon in the regulation of natural flowering behavior in Arabidopsis
-
Liu, J., He, Y., Amasino, R., and Chen, X. 2004. siRNAs targeting an intronic transposon in the regulation of natural flowering behavior in Arabidopsis. Genes & Dev. 18: 2873-2878.
-
(2004)
Genes & Dev.
, vol.18
, pp. 2873-2878
-
-
Liu, J.1
He, Y.2
Amasino, R.3
Chen, X.4
-
37
-
-
0035984059
-
Endogenous and silencing-associated small RNAs in plants
-
Llave, C., Kasschau, K.D., Rector, M.A., and Carrington, J.C. 2002a. Endogenous and silencing-associated small RNAs in plants. Plant Cell 14: 1605-1619.
-
(2002)
Plant Cell
, vol.14
, pp. 1605-1619
-
-
Llave, C.1
Kasschau, K.D.2
Rector, M.A.3
Carrington, J.C.4
-
38
-
-
0037144457
-
Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA
-
Llave, C., Xie, Z., Kasschau, K.D., and Carrington, J.C. 2002b. Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA. Science 297: 2053-2056.
-
(2002)
Science
, vol.297
, pp. 2053-2056
-
-
Llave, C.1
Xie, Z.2
Kasschau, K.D.3
Carrington, J.C.4
-
39
-
-
4043172772
-
Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis
-
Lurin, C., Andres, C., Aubourg, S., Bellaoui, M., Bitton, F., Bruyere, C., Caboche, M., Debast, C., Gualberto, J., Hoffmann, B., et al. 2004. Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis. Plant Cell 16: 2089-2103.
-
(2004)
Plant Cell
, vol.16
, pp. 2089-2103
-
-
Lurin, C.1
Andres, C.2
Aubourg, S.3
Bellaoui, M.4
Bitton, F.5
Bruyere, C.6
Caboche, M.7
Debast, C.8
Gualberto, J.9
Hoffmann, B.10
-
40
-
-
0742323558
-
Nonsense-mediated mRNA decay: Splicing, translation and mRNP dynamics
-
Maquat, L.E. 2004. Nonsense-mediated mRNA decay: Splicing, translation and mRNP dynamics. Nat. Rev. Mol. Cell Biol. 5: 89-99.
-
(2004)
Nat. Rev. Mol. Cell Biol.
, vol.5
, pp. 89-99
-
-
Maquat, L.E.1
-
41
-
-
0034716907
-
Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance
-
Mourrain, P., Beclin, C., Elmayan, T., Feuerbach, F., Godon, C., Morel, J.B., Jouette, D., Lacombe, A.M., Nikic, S., Picault, N., et al. 2000. Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance. Cell 101: 533-542.
-
(2000)
Cell
, vol.101
, pp. 533-542
-
-
Mourrain, P.1
Beclin, C.2
Elmayan, T.3
Feuerbach, F.4
Godon, C.5
Morel, J.B.6
Jouette, D.7
Lacombe, A.M.8
Nikic, S.9
Picault, N.10
-
42
-
-
2942708092
-
Geminivirus VIGS of endogenous genes required SGS2/SDE1 and SGS3 and defines a new branch in the genetic pathway for silencing in plants
-
Muangsan, N., Beclin, C., Vaucheret, H., and Robertson, D. 2004. Geminivirus VIGS of endogenous genes required SGS2/SDE1 and SGS3 and defines a new branch in the genetic pathway for silencing in plants. Plant J. 38: 1004-1014.
-
(2004)
Plant J.
, vol.38
, pp. 1004-1014
-
-
Muangsan, N.1
Beclin, C.2
Vaucheret, H.3
Robertson, D.4
-
43
-
-
14844302397
-
Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation
-
Onodera, Y., Haag, J.R., Ream, T., Nunes, P.C., Pontes, O., and Pikaard, C.S. 2005. Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation. Cell 120: 613-622.
-
(2005)
Cell
, vol.120
, pp. 613-622
-
-
Onodera, Y.1
Haag, J.R.2
Ream, T.3
Nunes, P.C.4
Pontes, O.5
Pikaard, C.S.6
-
44
-
-
0037015239
-
CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana
-
Park, W., Li, J., Song, R., Messing, J., and Chen, X. 2002. CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana. Curr. Biol. 12: 1484-1495.
-
(2002)
Curr. Biol.
, vol.12
, pp. 1484-1495
-
-
Park, W.1
Li, J.2
Song, R.3
Messing, J.4
Chen, X.5
-
45
-
-
14844339653
-
Nuclear processing and export of microRNAs in Arabidopsis
-
Park, M.Y., Wu, G., Gonzalez-Sulser, A., Vaucheret, H., and Poethig, R.S. 2005. Nuclear processing and export of microRNAs in Arabidopsis. Proc. Natl. Acad. Sci. 102: 3691-3696.
-
(2005)
Proc. Natl. Acad. Sci.
, vol.102
, pp. 3691-3696
-
-
Park, M.Y.1
Wu, G.2
Gonzalez-Sulser, A.3
Vaucheret, H.4
Poethig, R.S.5
-
46
-
-
4644286235
-
SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis
-
Peragine, A., Yoshikawa, M., Wu, G., Albrecht, H.L., and Poethig, R.S. 2004. SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis. Genes & Dev. 18: 2368-2379.
-
(2004)
Genes & Dev.
, vol.18
, pp. 2368-2379
-
-
Peragine, A.1
Yoshikawa, M.2
Wu, G.3
Albrecht, H.L.4
Poethig, R.S.5
-
47
-
-
1842766252
-
A Dicer-2-dependent 80s complex cleaves targeted mRNAs during RNAi in Drosophila
-
Pham, J.W., Pellino, J.L., Lee, Y.S., Carthew, R.W., and Sontheimer, E.J. 2004. A Dicer-2-dependent 80s complex cleaves targeted mRNAs during RNAi in Drosophila. Cell 117: 83-94.
-
(2004)
Cell
, vol.117
, pp. 83-94
-
-
Pham, J.W.1
Pellino, J.L.2
Lee, Y.S.3
Carthew, R.W.4
Sontheimer, E.J.5
-
48
-
-
0034708122
-
The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans
-
Reinhart, B.J., Slack, F.J., Basson, M., Pasquinelli, A.E., Bettinger, J.C., Rougvie, A.E., Horvitz, H.R., and Ruvkun, G. 2000. The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans. Nature 403: 901-906.
-
(2000)
Nature
, vol.403
, pp. 901-906
-
-
Reinhart, B.J.1
Slack, F.J.2
Basson, M.3
Pasquinelli, A.E.4
Bettinger, J.C.5
Rougvie, A.E.6
Horvitz, H.R.7
Ruvkun, G.8
-
49
-
-
0036645146
-
MicroRNAs in plants
-
Reinhart, B.J., Weinstein, E.G., Rhoades, M.W., Bartel, B., and Bartel, D.P. 2002. MicroRNAs in plants. Genes & Dev. 16: 1616-1626.
-
(2002)
Genes & Dev.
, vol.16
, pp. 1616-1626
-
-
Reinhart, B.J.1
Weinstein, E.G.2
Rhoades, M.W.3
Bartel, B.4
Bartel, D.P.5
-
50
-
-
0037355425
-
Initiation of silencing of maize MuDR/Mu transposable elements
-
Rudenko, G.N., Ono, A., and Walbot, V. 2003. Initiation of silencing of maize MuDR/Mu transposable elements. Plant J. 33: 1013-1025.
-
(2003)
Plant J.
, vol.33
, pp. 1013-1025
-
-
Rudenko, G.N.1
Ono, A.2
Walbot, V.3
-
51
-
-
0036834508
-
DICER-LIKE1: Blind men and elephants in Arabidopsis development
-
Schauer, S.E., Jacobsen, S.E., Meinke, D.W., and Ray, A. 2002. DICER-LIKE1: Blind men and elephants in Arabidopsis development. Trends Plant Sci. 7: 487-491.
-
(2002)
Trends Plant Sci.
, vol.7
, pp. 487-491
-
-
Schauer, S.E.1
Jacobsen, S.E.2
Meinke, D.W.3
Ray, A.4
-
52
-
-
0027298691
-
RNA-directed RNA polymerase from tomato leaves. II. Catalytic in vitro properties
-
Schiebel, W., Haas, B., Marinkovic, S., Klanner, A., and Sanger, H.L. 1993. RNA-directed RNA polymerase from tomato leaves. II. Catalytic in vitro properties. J. Biol. Chem. 268: 11858-11867.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 11858-11867
-
-
Schiebel, W.1
Haas, B.2
Marinkovic, S.3
Klanner, A.4
Sanger, H.L.5
-
53
-
-
19644400971
-
Uridine addition after microRNA-directed cleavage
-
Shen, B. and Goodman, H.M. 2004. Uridine addition after microRNA-directed cleavage. Science 306: 997.
-
(2004)
Science
, vol.306
, pp. 997
-
-
Shen, B.1
Goodman, H.M.2
-
54
-
-
0345306117
-
Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi
-
Sijen, T. and Plasterk, R.H. 2003. Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi. Nature 426: 310-314.
-
(2003)
Nature
, vol.426
, pp. 310-314
-
-
Sijen, T.1
Plasterk, R.H.2
-
55
-
-
13844280638
-
Synthetic shRNAs as potent RNAi triggers
-
Siolas, D., Lerner, C., Burchard, J., Ge, W., Linsley, P.S., Paddison, P.J., Hannon, G.J., and Cleary, M.A. 2004. Synthetic shRNAs as potent RNAi triggers. Nat. Biotechnol. 23: 227-231
-
(2004)
Nat. Biotechnol.
, vol.23
, pp. 227-231
-
-
Siolas, D.1
Lerner, C.2
Burchard, J.3
Ge, W.4
Linsley, P.S.5
Paddison, P.J.6
Hannon, G.J.7
Cleary, M.A.8
-
56
-
-
3242691607
-
AtXRN4 degrades mRNA in Arabidopsis and its substrates include selected miRNA targets
-
Souret, F.F., Kastenmayer, J.P., and Green, P.J. 2004. AtXRN4 degrades mRNA in Arabidopsis and its substrates include selected miRNA targets. Mol. Cell 15: 173-183.
-
(2004)
Mol. Cell
, vol.15
, pp. 173-183
-
-
Souret, F.F.1
Kastenmayer, J.P.2
Green, P.J.3
-
57
-
-
0037224921
-
A biochemical framework for RNA silencing in plants
-
Tang, G., Reinhart, B.J., Bartel, D.P., and Zamore, P.D. 2003. A biochemical framework for RNA silencing in plants. Genes & Dev. 17: 49-63.
-
(2003)
Genes & Dev.
, vol.17
, pp. 49-63
-
-
Tang, G.1
Reinhart, B.J.2
Bartel, D.P.3
Zamore, P.D.4
-
58
-
-
14644393684
-
Perspective: Machines for RNAi
-
Tomari, Y. and Zamore, P.D. 2005. Perspective: Machines for RNAi. Genes & Dev. 19: 517-529.
-
(2005)
Genes & Dev.
, vol.19
, pp. 517-529
-
-
Tomari, Y.1
Zamore, P.D.2
-
59
-
-
8844271740
-
A protein sensor for siRNA asymmetry
-
Tomari, Y., Matranga, C., Haley, B., Martinez, N., and Zamore, P.D. 2004. A protein sensor for siRNA asymmetry. Science 306: 1377-1380.
-
(2004)
Science
, vol.306
, pp. 1377-1380
-
-
Tomari, Y.1
Matranga, C.2
Haley, B.3
Martinez, N.4
Zamore, P.D.5
-
60
-
-
0035999373
-
Spreading of RNA targeting and DNA methylation in RNA silencing requires transcription of the target gene and a putative RNA-dependent RNA polymerase
-
Vaistij, F.E., Jones, L., and Baulcombe, D.C. 2002. Spreading of RNA targeting and DNA methylation in RNA silencing requires transcription of the target gene and a putative RNA-dependent RNA polymerase. Plant Cell 14: 857-867.
-
(2002)
Plant Cell
, vol.14
, pp. 857-867
-
-
Vaistij, F.E.1
Jones, L.2
Baulcombe, D.C.3
-
61
-
-
1542350745
-
The nuclear dsRNA binding protein HYL1 is required for MicroRNA accumulation and plant development, but not posttranscriptional transgene silencing
-
Vazquez, F., Gasciolli, V., Crete, P., and Vaucheret, H. 2004a. The nuclear dsRNA binding protein HYL1 is required for MicroRNA accumulation and plant development, but not posttranscriptional transgene silencing. Curr. Biol. 14: 346-351.
-
(2004)
Curr. Biol.
, vol.14
, pp. 346-351
-
-
Vazquez, F.1
Gasciolli, V.2
Crete, P.3
Vaucheret, H.4
-
62
-
-
4944225347
-
Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs
-
Vazquez, F., Vaucheret, H., Rajagopalan, R., Lepers, C., Gasciolli, V., Mallory, A.C., Hilbert, J.L., Bartel, D.P., and Crete, P. 2004b. Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs. Mol. Cell 16: 69-79.
-
(2004)
Mol. Cell
, vol.16
, pp. 69-79
-
-
Vazquez, F.1
Vaucheret, H.2
Rajagopalan, R.3
Lepers, C.4
Gasciolli, V.5
Mallory, A.C.6
Hilbert, J.L.7
Bartel, D.P.8
Crete, P.9
-
63
-
-
22144433672
-
A database analysis method identifies an endogenous trans-acting short-interfering RNA that targets the Arabidopsis ARF2, ARF3, and ARF4 genes
-
Williams, L., Carles, C.C., Osmont, K.S., and Fletcher, J.C. 2005. A database analysis method identifies an endogenous trans-acting short-interfering RNA that targets the Arabidopsis ARF2, ARF3, and ARF4 genes. Proc. Natl. Acad. Sci. 102: 9703-9708.
-
(2005)
Proc. Natl. Acad. Sci.
, vol.102
, pp. 9703-9708
-
-
Williams, L.1
Carles, C.C.2
Osmont, K.S.3
Fletcher, J.C.4
-
64
-
-
19344374219
-
Genetic and functional diversification of small RNA pathways in plants
-
Xie, Z., Johansen, L.K., Gustafson, A.M., Kasschau, K.D., Lellis, A.D., Zilberman, D., Jacobsen, S.E., and Carrington, J.C. 2004. Genetic and functional diversification of small RNA pathways in plants. PLoS Biol. 2: 642-652.
-
(2004)
PLoS Biol.
, vol.2
, pp. 642-652
-
-
Xie, Z.1
Johansen, L.K.2
Gustafson, A.M.3
Kasschau, K.D.4
Lellis, A.D.5
Zilberman, D.6
Jacobsen, S.E.7
Carrington, J.C.8
-
65
-
-
13644256193
-
Methylation as a crucial step in plant microRNA biogenesis
-
Yu, B., Yang, Z., Li, J., Minakhina, S., Yang, M., Padgett, R.W., Steward, R., and Chen, X. 2005. Methylation as a crucial step in plant microRNA biogenesis. Science 307: 932-935.
-
(2005)
Science
, vol.307
, pp. 932-935
-
-
Yu, B.1
Yang, Z.2
Li, J.3
Minakhina, S.4
Yang, M.5
Padgett, R.W.6
Steward, R.7
Chen, X.8
-
66
-
-
0036845374
-
Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP
-
Zhang, H., Kolb, F.A., Brondani, V., Billy, E., and Filipowicz, W. 2002. Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP. EMBO J. 21: 5875-5885.
-
(2002)
EMBO J.
, vol.21
, pp. 5875-5885
-
-
Zhang, H.1
Kolb, F.A.2
Brondani, V.3
Billy, E.4
Filipowicz, W.5
-
67
-
-
3142613181
-
Single processing center models for human Dicer and bacterial RNase III
-
Zhang, H., Kolb, F.A., Jaskiewicz, L., Westhof, E., and Filipowicz, W. 2004. Single processing center models for human Dicer and bacterial RNase III. Cell 118: 57-68.
-
(2004)
Cell
, vol.118
, pp. 57-68
-
-
Zhang, H.1
Kolb, F.A.2
Jaskiewicz, L.3
Westhof, E.4
Filipowicz, W.5
-
68
-
-
0037474126
-
ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation
-
Zilberman, D., Cao, X., and Jacobsen, S.E. 2003. ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science 299: 716-719.
-
(2003)
Science
, vol.299
, pp. 716-719
-
-
Zilberman, D.1
Cao, X.2
Jacobsen, S.E.3
|