Histone acetyltransferase GCN5 interferes with the miRNA pathway in Arabidopsis

Cell Research

Volumn 19, Issue 7, 2009, Pages 899-909

  Kim, Wanhui ^a   Benhamed, Moussa ^a   Servet, Caroline ^a   Latrasse, David ^a   Zhang, Wei ^a   Delarue, Marianne ^a   Zhou, Dao Xiu ^a  

^a INSTITUTE OF PLANT SCIENCES PARIS SACLAY IPS2   (France)

Author keywords

Chromatin; Epigenetic; GCN5; Histone acetylation; Histone acetyltransferase; MiRNA

Indexed keywords

ARABIDOPSIS PROTEIN; GCN5 PROTEIN, ARABIDOPSIS; HISTONE; HISTONE ACETYLTRANSFERASE; HYDROXAMIC ACID; MICRORNA; TRANSCRIPTION FACTOR; TRICHOSTATIN A;

ACETYLATION; ARABIDOPSIS; ARTICLE; ENZYMOLOGY; GENE SILENCING; GENETICS; METABOLISM; MUTATION;

ACETYLATION; ARABIDOPSIS; ARABIDOPSIS PROTEINS; GENE SILENCING; HISTONE ACETYLTRANSFERASES; HISTONES; HYDROXAMIC ACIDS; MICRORNAS; MUTATION; TRANSCRIPTION FACTORS;

ARABIDOPSIS;

EID: 68149180031     PISSN: 10010602     EISSN: 17487838     Source Type: Journal    
DOI: 10.1038/cr.2009.59     Document Type: Article

References (56)

1. Berger SL. The complex language of chromatin regulation during transcription. Nature 2007; 447:407-412.
2. Grant PA, Duggan L, Cote J, et al. Yeast Gcn5 functions in two multisubunit complexes to acetylate nucleosomal histones: characterization of an Ada complex and the SAGA (Spt/ Ada) complex. Genes Dev 1997; 11 :1640-1650.
3. Lee TI, Causton HC, Holstege FC, et al. Redundant roles for the TFIID and SAGA complexes in global transcription. Nature 2000; 405:701-704.
4. Carre C, Szymczak D, Pidoux J, Antoniewski C. The histone H3 acetylase dGcn5 is a key player in Drosophila melanogaster metamorphosis. Mol Cell Biol 2005; 25:8228-8238.
5. Xu W, Edmondson DG, Evrard YA, et al. Loss of Gcn5l2 leads to increased apoptosis and mesodermal defects during mouse development. Nat Genet 2000; 26:229-232.
6. Yamauchi T, Yamauchi J, Kuwata T, et al. Distinct but overlapping roles of histone acetylase PCAF and of the closely related PCAF-B/GCN5 in mouse embryogenesis. Proc Natl Acad Sci USA 2000; 97:11303-11306.
7. Pandey R, Muller A, Napoli CA, et al. Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modifcation among multicellular eukaryotes. Nucleic Acids Res 2002; 30:5036-5055.
8. Vlachonasios KE, Thomashow MF, Triezenberg SJ. Disruption mutations of ADA2b and GCN5 transcriptional adaptor genes dramatically affect Arabidopsis growth, development, and gene expression. Plant Cell 2003; 15:626-638.
9. Benhamed M, Bertrand C, Servet C, Zhou DX. Arabidopsis GCN5, HD1, and TAF1/HAF2 interact to regulate histone acetylation required for light-responsive gene expression. Plant Cell 2006; 18:2893-2903.
10. Bertrand C, Bergounioux C, Domenichini S, Delarue M, Zhou DX. Arabidopsis histone acetyltransferase AtGCN5 regulates the foral meristem activity through the WUSCHEL/ AGAMOUS pathway. J Biol Chem 2003; 278:28246-28251.
11. Earley KW, Shook MS, Brower-Toland B, Hicks L, Pikaard CS. In vitro specifcities of Arabidopsis co-activator histone acetyltransferases: implications for histone hyperacetylation in gene activation. Plant J 2007; 52:615-626.
12. Benhamed M, Martin-Magniette ML, Taconnat L, et al. Genome-scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5. Plant J 2008; 56:493-504.
13. Bertrand C, Benhamed M, Li YF, Ayadi M, et al. Arabidopsis HAF2 gene encoding TATA-binding protein (TBP)-associated factor TAF1, is required to integrate light signals to regulate gene expression and growth. J Biol Chem 2005; 280:1465-1473.
14. Park W, Li J, Song R, Messing J, Chen X. CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana. Curr Biol 2002; 12:1484-1495.
15. Lobbes D, Rallapalli G, Schmidt DD, Martin C, Clarke J. SERRATE: a new player on the plant microRNA scene. EMBO Rep 2006; 7:1052-1058.
16. Vazquez F, Gasciolli V, Crete P, Vaucheret H. The nuclear dsRNA binding protein HYL1 is required for microRNA accumulation and plant development, but not posttranscriptional transgene silencing. Curr Biol 2004; 14:346-351.
17. Boutet S, Vazquez F, Liu J, Beclin C, et al. Arabidopsis HEN1: a genetic link between endogenous miRNA controlling development and siRNA controlling transgene silencing and virus resistance. Curr Biol 2003; 13:843-848.
18. Vaucheret H, Vazquez F, Crete P, Bartel DP. The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. Genes Dev 2004; 18:1187-1197.
19. Palatnik JF, Allen E, Wu X, et al. Control of leaf morphogenesis by microRNAs. Nature 2003; 425:257-263.
20. Chen X. A microRNA as a translational repressor of APETA-LA2 in Arabidopsis flower development. Science 2004; 303:2022- 2025.
21. Guo HS, Xie Q, Fei JF, Chua NH. MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for Arabidopsis lateral root development. Plant Cell 2005; 17:1376-1386.
22. Lauter N, Kampani A, Carlson S, Goebel M, Moose SP. microRNA172 down-regulates glossy15 to promote vegetative phase change in maize. Proc Natl Acad Sci USA 2005; 102:9412-9417.
23. Jones-Rhoades MW, Bartel DP. Computational identifica- tion of plant microRNAs and their targets, including a stress-induced miRNA. Mol Cell 2004; 14:787-799.
24. Lu S, Sun YH, Shi R, et al. Novel and mechanical stress-responsive microRNAs in Populus trichocarpa that are absent from Arabidopsis. Plant Cell 2005; 17:2186-2203.
25. Sunkar R, Zhu JK. Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell 2004; 16:2001-2019.
26. Zhou X, Wang G, Sutoh K, Zhu JK, Zhang W. Identification of cold-inducible microRNAs in plants by transcriptome analysis. Biochim Biophys Acta 2008; 1779:780-788.
27. Chiou TJ, Aung K, Lin SI, et al. Regulation of phosphate homeostasis by MicroRNA in Arabidopsis. Plant Cell 2006; 18:412-421.
28. Bari R, Datt Pant B, Stitt M, Scheible WR. PHO2, microR-NA399, and PHR1 defne a phosphate-signaling pathway in plants. Plant Physiol 2006; 141:988-999.
29. Achard P, Herr A, Baulcombe DC, Harberd NP. Modulation of foral development by a gibberellin-regulated microRNA. Development 2004; 131:3357-3365.
30. Fujii H, Chiou TJ, Lin SI, Aung K, Zhu JK. A miRNA involved in phosphate-starvation response in Arabidopsis. Curr Biol 2005; 15:2038-2043.
31. Llave C, Xie Z, Kasschau KD, Carrington JC. Cleavage of scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA. Science 2002; 297:2053-2056.
32. Servet C, Benhamed M, Latrasse D, et al. Characterization of a phosphatase 2C protein as an interacting partner of the histone acetyltransferase GCN5 in Arabidopsis. Biochim Biophys Acta 2008; 1779:376-382.
33. Prigge MJ, Wagner DR. The Arabidopsis serrate gene encodes a zinc-fnger protein required for normal shoot development. Plant Cell 2001; 13:1263-1279.
34. Nikovics K, Blein T, Peaucelle A, et al. The balance between the MIR164A and CUC2 genes controls leaf margin serration in Arabidopsis. Plant Cell 2006; 18:2929-2945.
35. Tian L, Chen ZJ. Blocking histone deacetylation in Arabidop-sis induces pleiotropic effects on plant gene regulation and development. Proc Natl Acad Sci USA 2001; 98:200-205.
36. Parizotto EA, Dunoyer P, Rahm N, Himber C, Voinnet O. In vivo investigation of the transcription, processing, endonucleolytic activity, and functional relevance of the spatial distribution of a plant miRNA. Genes Dev 2004; 18:2237-2242.
37. Wang JW, Wang LJ, Mao YB, et al. Control of root cap formation by microRNA-targeted auxin response factors in Arabidopsis. Plant Cell 2005; 17:2204-2216.
38. Zhang L, Volinia S, Bonome T, et al. Genomic and epigenetic alterations deregulate microRNA expression in human epithelial ovarian cancer. Proc Natl Acad Sci USA 2008; 105:7004-7009.
39. Scott GK, Mattie MD, Berger CE, Benz SC, Benz CC. Rapid alteration of microRNA levels by histone deacetylase inhibition. Cancer Res 2006; 66:1277-1281.
40. Grigg SP, Canales C, Hay A, Tsiantis M. SERRATE coordinates shoot meristem function and leaf axial patterning in Arabidopsis. Nature 2005; 437:1022-1026.
41. Czechowski T, Stitt M, Altmann T, Udvardi MK, Scheible WR. Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol 2005; 139:5-17.
42. Gendrel AV, Lippman Z, Yordan C, Colot V, Martienssen RA. Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1. Science 2002; 297:1871-1873.
43. Rhoades MW, Reinhart BJ, Lim LP, et al. Prediction of plant microRNA targets. Cell 2002; 110:513-520.
44. Schwab R, Palatnik JF, Riester M, et al. Specifc effects of microRNAs on the plant transcriptome. Dev Cell 2005; 8:517-527.
45. Palatnik JF, Wollmann H, Schommer C, et al. Sequence and expression differences underlie functional specialization of Arabidopsis microRNAs miR159 and miR319. Dev Cell 2007; 13:115-125.
46. Reyes JL, Chua NH. ABA induction of miR159 controls transcript levels of two MYB factors during Arabidopsis seed germination. Plant J 2007; 49:592-606.
47. Xie Z, Kasschau KD, Carrington JC. Negative feedback regulation of Dicer-Like1 in Arabidopsis by microRNA-guided mRNA degradation. Curr Biol 2003; 13:784-789.
48. Laufs P, Peaucelle A, Morin H, Traas J. MicroRNA regulation of the CUC genes is required for boundary size control in Arabidopsis meristems. Development 2004; 131:4311-4322.
49. Mallory AC, Dugas DV, Bartel DP, Bartel B. MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and foral organs. Curr Biol 2004; 14:1035-1046. 909
50. Li H, Xu L, Wang H, et al. The Putative RNA-dependent RNA polymerase RDR6 acts synergistically with ASYMMETRIC LEAVES1 and 2 to repress BREVIPEDICELLUS and MicroRNA165/166 in Arabidopsis leaf development. Plant Cell 2005; 17:2157-2171.
51. Mallory AC, Reinhart BJ, Jones-Rhoades MW, et al. MicroR-NA control of PHABULOSA in leaf development: importance of pairing to the microRNA 5' region. EMBO J 2004; 23:3356-3364.
52. Wu MF, Tian Q, Reed JW. Arabidopsis microRNA167 controls patterns of ARF6 and ARF8 expression, and regulates both female and male reproduction. Development 2006; 133:4211-4218.
53. Aukerman MJ, Sakai H. Regulation of flowering time and foral organ identity by a microRNA and its APETALA2-like target genes. Plant Cell Online 2003; 15:2730.
54. Jung JH, Seo YH, Seo PJ, et al. The GIGANTEA-regulated microRNA172 mediates photoperiodic fowering independent of CONSTANS in Arabidopsis. Plant Cell 2007; 19:2736-2748.
55. Aung K, Lin SI, Wu CC, et al. pho2, a phosphate overaccu-mulator, is caused by a nonsense mutation in a microRNA399 target gene. Plant Physiol 2006; 141:1000-1011.
56. Lin SI, Chiang SF, Lin WY, et al. Regulatory network of microRNA399 and PHO2 by systemic signaling. Plant Physiol 2008; 147:732-746.