-
1
-
-
53349121971
-
Mechanism of induction and suppression of antiviral immunity directed by virus-derived small RNAs in Drosophila
-
Aliyari, R., Wu, Q., Li, H.W., Wang, X.H., Li, F., Green, L.D., Han, C.S., Li, W.X., and Ding, S.W. (2008). Mechanism of induction and suppression of antiviral immunity directed by virus-derived small RNAs in Drosophila. Cell Host Microbe 4: 387-397.
-
(2008)
Cell Host Microbe
, vol.4
, pp. 387-397
-
-
Aliyari, R.1
Wu, Q.2
Li, H.W.3
Wang, X.H.4
Li, F.5
Green, L.D.6
Han, C.S.7
Li, W.X.8
Ding, S.W.9
-
2
-
-
17444430392
-
MicroRNA-directed phasing during trans-acting siRNA biogenesis in plants
-
Allen, E., Xie, Z., Gustafson, A.M., and Carrington, J.C. (2005). MicroRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 121: 207-221.
-
(2005)
Cell
, vol.121
, pp. 207-221
-
-
Allen, E.1
Xie, Z.2
Gustafson, A.M.3
Carrington, J.C.4
-
3
-
-
9644272448
-
Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana
-
Allen, E., Xie, Z., Gustafson, A.M., Sung, G.H., Spatafora, J.W., and Carrington, J.C. (2004). Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana. Nat. Genet. 36: 1282-1290.
-
(2004)
Nat. Genet
, vol.36
, pp. 1282-1290
-
-
Allen, E.1
Xie, Z.2
Gustafson, A.M.3
Sung, G.H.4
Spatafora, J.W.5
Carrington, J.C.6
-
4
-
-
23844550243
-
Arabidopsis ARGO-NAUTE1 is an RNA slicer that selectively recruits microRNAs and short interfering RNAs
-
Baumberger, N., and Baulcombe, D.C. (2005). Arabidopsis ARGO-NAUTE1 is an RNA slicer that selectively recruits microRNAs and short interfering RNAs. Proc. Natl. Acad. Sci. USA 102: 11928-11933.
-
(2005)
Proc. Natl. Acad. Sci. Usa
, vol.102
, pp. 11928-11933
-
-
Baumberger, N.1
Baulcombe, D.C.2
-
5
-
-
33845628177
-
Four plant Dicers mediate viral small RNA biogenesis and DNA virus induced silencing
-
Blevins, T., Rajeswaran, R., Shivaprasad, P.V., Beknazariants, D., Si-Ammour, A., Park, H.S., Vazquez, F., Robertson, D., Meins, F., Jr., Hohn, T., and Pooggin, M.M. (2006). Four plant Dicers mediate viral small RNA biogenesis and DNA virus induced silencing. Nucleic Acids Res. 34: 6233-6246.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 6233-6246
-
-
Blevins, T.1
Rajeswaran, R.2
Shivaprasad, P.V.3
Beknazariants, D.4
Si-Ammour, A.5
Park, H.S.6
Vazquez, F.7
Robertson, D.8
Meins Jr., F.9
Hohn, T.10
Pooggin, M.M.11
-
6
-
-
29244490062
-
Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis
-
Borsani, O., Zhu, J., Verslues, P.E., Sunkar, R., and Zhu, J.K. (2005). Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis. Cell 123: 1279-1291.
-
(2005)
Cell
, vol.123
, pp. 1279-1291
-
-
Borsani, O.1
Zhu, J.2
Verslues, P.E.3
Sunkar, R.4
Zhu, J.K.5
-
7
-
-
33746561720
-
An antagonistic function for Arabidopsis DCL2 in development and a new function for DCL4 in generating viral siRNAs
-
Bouche, N., Lauressergues, D., Gasciolli, V., and Vaucheret, H. (2006). An antagonistic function for Arabidopsis DCL2 in development and a new function for DCL4 in generating viral siRNAs. EMBO J. 25: 3347-3356.
-
(2006)
Embo J
, vol.25
, pp. 3347-3356
-
-
Bouche, N.1
Lauressergues, D.2
Gasciolli, V.3
Vaucheret, H.4
-
8
-
-
0037046810
-
Role of the Arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing
-
Cao, X., and Jacobsen, S.E. (2002). Role of the Arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing. Curr. Biol. 12: 1138-1144.
-
(2002)
Curr. Biol
, vol.12
, pp. 1138-1144
-
-
Cao, X.1
Jacobsen, S.E.2
-
9
-
-
2442681764
-
Viral RNA silencing suppressors inhibit the microRNA pathway at an intermediate step
-
Chapman, E.J., Prokhnevsky, A.I., Gopinath, K., Dolja, V.V., and Carrington, J.C. (2004). Viral RNA silencing suppressors inhibit the microRNA pathway at an intermediate step. Genes Dev. 18: 1179-1186.
-
(2004)
Genes Dev
, vol.18
, pp. 1179-1186
-
-
Chapman, E.J.1
Prokhnevsky, A.I.2
Gopinath, K.3
Dolja, V.V.4
Carrington, J.C.5
-
10
-
-
0042436506
-
An improved method for purification of Turnip mosaic virus
-
Choi, J.K., Maeda, T., and Wakimoto, S. (1977). An improved method for purification of Turnip mosaic virus. Ann. Phytopath. Soc. Japan 43: 440-448.
-
(1977)
Ann. Phytopath. Soc. Japan
, vol.43
, pp. 440-448
-
-
Choi, J.K.1
Maeda, T.2
Wakimoto, S.3
-
11
-
-
76249087711
-
Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing
-
Cuperus, J.T., Montgomery, T.A., Fahlgren, N., Burke, R.T., Townsend, T., Sullivan, C.M., and Carrington, J.C. (2010). Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing. Proc. Natl. Acad. Sci. USA 107: 466-471.
-
(2010)
Proc. Natl. Acad. Sci. Usa
, vol.107
, pp. 466-471
-
-
Cuperus, J.T.1
Montgomery, T.A.2
Fahlgren, N.3
Burke, R.T.4
Townsend, T.5
Sullivan, C.M.6
Carrington, J.C.7
-
12
-
-
0034716924
-
An RNA-dependent RNA polymerase gene in Arabidopsis is required for posttranscriptional gene silencing mediated by a transgene but not by a virus
-
Dalmay, T., Hamilton, A., Rudd, S., Angell, S., and Baulcombe, D.C. (2000). An RNA-dependent RNA polymerase gene in Arabidopsis is required for posttranscriptional gene silencing mediated by a transgene but not by a virus. Cell 101: 543-553.
-
(2000)
Cell
, vol.101
, pp. 543-553
-
-
Dalmay, T.1
Hamilton, A.2
Rudd, S.3
Angell, S.4
Baulcombe, D.C.5
-
13
-
-
33745916446
-
Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defense
-
Deleris, A., Gallego-Bartolome, J., Bao, J., Kasschau, K.D., Carrington, J.C., and Voinnet, O. (2006). Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defense. Science 313: 68-71.
-
(2006)
Science
, vol.313
, pp. 68-71
-
-
Deleris, A.1
Gallego-Bartolome, J.2
Bao, J.3
Kasschau, K.D.4
Carrington, J.C.5
Voinnet, O.6
-
14
-
-
34547600663
-
Suppression of antiviral silencing by cucumber mosaic virus 2b protein in Arabidopsis is associated with drastically reduced accumulation of three classes of viral small interfering RNAs
-
Diaz-Pendon, J.A., Li, F., Li, W.X., and Ding, S.W. (2007). Suppression of antiviral silencing by cucumber mosaic virus 2b protein in Arabidopsis is associated with drastically reduced accumulation of three classes of viral small interfering RNAs. Plant Cell 19: 2053-2063.
-
(2007)
Plant Cell
, vol.19
, pp. 2053-2063
-
-
Diaz-Pendon, J.A.1
Li, F.2
Li, W.X.3
Ding, S.W.4
-
15
-
-
34547587566
-
Antiviral immunity directed by small RNAs
-
Ding, S.W., and Voinnet, O. (2007). Antiviral immunity directed by small RNAs. Cell 130: 413-426.
-
(2007)
Cell
, vol.130
, pp. 413-426
-
-
Ding, S.W.1
Voinnet, O.2
-
16
-
-
43949109593
-
Structural and genetic requirements for the biogenesis of tobacco rattle virus-derived small interfering RNAs
-
Donaire, L., Barajas, D., Martinez-Garcia, B., Martinez-Priego, L., Pagan, I., and Llave, C. (2008). Structural and genetic requirements for the biogenesis of tobacco rattle virus-derived small interfering RNAs. J. Virol. 82: 5167-5177.
-
(2008)
J. Virol
, vol.82
, pp. 5167-5177
-
-
Donaire, L.1
Barajas, D.2
Martinez-Garcia, B.3
Martinez-Priego, L.4
Pagan, I.5
Llave, C.6
-
17
-
-
69849103740
-
Deep-sequencing of plant viral small RNAs reveals effective and widespread targeting of viral genomes
-
Donaire, L., Wang, Y., Gonzalez-Ibeas, D., Mayer, K.F., Aranda, M.A., and Llave, C. (2009). Deep-sequencing of plant viral small RNAs reveals effective and widespread targeting of viral genomes. Virology 392: 203-214.
-
(2009)
Virology
, vol.392
, pp. 203-214
-
-
Donaire, L.1
Wang, Y.2
Gonzalez-Ibeas, D.3
Mayer, K.F.4
Aranda, M.A.5
Llave, C.6
-
18
-
-
48249126187
-
The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of primiRNA by DCL1
-
Dong, Z., Han, M.H., and Fedoroff, N. (2008). The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of primiRNA by DCL1. Proc. Natl. Acad. Sci. USA 105: 9970-9975.
-
(2008)
Proc. Natl. Acad. Sci. Usa
, vol.105
, pp. 9970-9975
-
-
Dong, Z.1
Han, M.H.2
Fedoroff, N.3
-
19
-
-
65349094759
-
Computational and analytical framework for small RNA profiling by high-throughput sequencing
-
Fahlgren, N., Sullivan, C.M., Kasschau, K.D., Chapman, E.J., Cumbie, J.S., Montgomery, T.A., Gilbert, S.D., Dasenko, M., Backman, T.W., Givan, S.A., and Carrington, J.C. (2009). Computational and analytical framework for small RNA profiling by high-throughput sequencing. RNA 15: 992-1002.
-
(2009)
Rna
, vol.15
, pp. 992-1002
-
-
Fahlgren, N.1
Sullivan, C.M.2
Kasschau, K.D.3
Chapman, E.J.4
Cumbie, J.S.5
Montgomery, T.A.6
Gilbert, S.D.7
Dasenko, M.8
Backman, T.W.9
Givan, S.A.10
Carrington, J.C.11
-
20
-
-
65249175123
-
Dicing of viral replication intermediates during silencing of latent Drosophila viruses
-
Flynt, A., Liu, N., Martin, R., and Lai, E.C. (2009). Dicing of viral replication intermediates during silencing of latent Drosophila viruses. Proc. Natl. Acad. Sci. USA 106: 5270-5275.
-
(2009)
Proc. Natl. Acad. Sci. Usa
, vol.106
, pp. 5270-5275
-
-
Flynt, A.1
Liu, N.2
Martin, R.3
Lai, E.C.4
-
21
-
-
33750513190
-
RNA interference-inducing hairpin RNAs in plants act through the viral defence pathway
-
Fusaro, A.F., Matthew, L., Smith, N.A., Curtin, S.J., Dedic-Hagan, J., Ellacott, G.A., Watson, J.M., Wang, M.B., Brosnan, C., Carroll, B.J., and Waterhouse, P.M. (2006). RNA interference-inducing hairpin RNAs in plants act through the viral defence pathway. EMBO Rep. 7: 1168-1175.
-
(2006)
Embo Rep
, vol.7
, pp. 1168-1175
-
-
Fusaro, A.F.1
Matthew, L.2
Smith, N.A.3
Curtin, S.J.4
Dedic-Hagan, J.5
Ellacott, G.A.6
Watson, J.M.7
Wang, M.B.8
Brosnan, C.9
Carroll, B.J.10
Waterhouse, P.M.11
-
22
-
-
33748656721
-
Inducible yeast system for Viral RNA recombination reveals requirement for an RNA replication signal on both parental RNAs
-
Garcia-Ruiz, H., and Ahlquist, P. (2006). Inducible yeast system for Viral RNA recombination reveals requirement for an RNA replication signal on both parental RNAs. J. Virol. 80: 8316-8328.
-
(2006)
J. Virol
, vol.80
, pp. 8316-8328
-
-
Garcia-Ruiz, H.1
Ahlquist, P.2
-
23
-
-
23944483216
-
Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs
-
Gasciolli, V., Mallory, A.C., Bartel, D.P., and Vaucheret, H. (2005). Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs. Curr. Biol. 15: 1494-1500.
-
(2005)
Curr. Biol
, vol.15
, pp. 1494-1500
-
-
Gasciolli, V.1
Mallory, A.C.2
Bartel, D.P.3
Vaucheret, H.4
-
24
-
-
27144544125
-
SERRATE coordinates shoot meristem function and leaf axial patterning in Arabidopsis
-
Grigg, S.P., Canales, C., Hay, A., and Tsiantis, M. (2005). SERRATE coordinates shoot meristem function and leaf axial patterning in Arabidopsis. Nature 437: 1022-1026.
-
(2005)
Nature
, vol.437
, pp. 1022-1026
-
-
Grigg, S.P.1
Canales, C.2
Hay, A.3
Tsiantis, M.4
-
25
-
-
0742323351
-
The Arabidopsis double-stranded RNA-binding protein HYL1 plays a role in microRNA-mediated gene regulation
-
Han, M.H., Goud, S., Song, L., and Fedoroff, N. (2004). The Arabidopsis double-stranded RNA-binding protein HYL1 plays a role in microRNA-mediated gene regulation. Proc. Natl. Acad. Sci. USA 101: 1093-1098.
-
(2004)
Proc. Natl. Acad. Sci. Usa
, vol.101
, pp. 1093-1098
-
-
Han, M.H.1
Goud, S.2
Song, L.3
Fedoroff, N.4
-
26
-
-
0035015241
-
The suppressor of transgene RNA silencing encoded by Cucumber mosaic virus interferes with salicylic acid-mediated virus resistance
-
Ji, L.H., and Ding, S.W. (2001). The suppressor of transgene RNA silencing encoded by Cucumber mosaic virus interferes with salicylic acid-mediated virus resistance. Mol. Plant Microbe Interact. 14: 715-724.
-
(2001)
Mol. Plant Microbe Interact
, vol.14
, pp. 715-724
-
-
Ji, L.H.1
Ding, S.W.2
-
27
-
-
0034953458
-
Silencing on the spot: Induction and suppression of RNA silencing in the Agrobacterium-mediated transient expression system
-
Johansen, L.K., and Carrington, J.C. (2001). Silencing on the spot: induction and suppression of RNA silencing in the Agrobacterium-mediated transient expression system. Plant Physiol. 126: 930-938.
-
(2001)
Plant Physiol
, vol.126
, pp. 930-938
-
-
Johansen, L.K.1
Carrington, J.C.2
-
28
-
-
0035918987
-
Long-distance movement and replication maintenance functions correlate with silencing suppression activity of potyviral HC-Pro
-
Kasschau, K.D., and Carrington, J.C. (2001). Long-distance movement and replication maintenance functions correlate with silencing suppression activity of potyviral HC-Pro. Virology 285: 71-81.
-
(2001)
Virology
, vol.285
, pp. 71-81
-
-
Kasschau, K.D.1
Carrington, J.C.2
-
29
-
-
0031575528
-
Genome amplification and long-distance movement functions associated with the central domain of tobacco etch potyvirus helper componentproteinase
-
Kasschau, K.D., Cronin, S., and Carrington, J.C. (1997). Genome amplification and long-distance movement functions associated with the central domain of tobacco etch potyvirus helper componentproteinase. Virology 228: 251-262.
-
(1997)
Virology
, vol.228
, pp. 251-262
-
-
Kasschau, K.D.1
Cronin, S.2
Carrington, J.C.3
-
30
-
-
0037320231
-
P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA function
-
Kasschau, K.D., Xie, Z., Allen, E., Llave, C., Chapman, E.J., Krizan, K.A., and Carrington, J.C. (2003). P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA function. Dev. Cell 4: 205-217.
-
(2003)
Dev. Cell
, vol.4
, pp. 205-217
-
-
Kasschau, K.D.1
Xie, Z.2
Allen, E.3
Llave, C.4
Chapman, E.J.5
Krizan, K.A.6
Carrington, J.C.7
-
31
-
-
33745516843
-
Small RNA binding is a common strategy to suppress RNA silencing by several viral suppressors
-
Lakatos, L., Csorba, T., Pantaleo, V., Chapman, E.J., Carrington, J.C., Liu, Y.P., Dolja, V.V., Calvino, L.F., Lopez-Moya, J.J., and Burgyan, J. (2006). Small RNA binding is a common strategy to suppress RNA silencing by several viral suppressors. EMBO J. 25: 2768-2780.
-
(2006)
Embo J
, vol.25
, pp. 2768-2780
-
-
Lakatos, L.1
Csorba, T.2
Pantaleo, V.3
Chapman, E.J.4
Carrington, J.C.5
Liu, Y.P.6
Dolja, V.V.7
Calvino, L.F.8
Lopez-Moya, J.J.9
Burgyan, J.10
-
32
-
-
0037172664
-
Loss-of-susceptibility mutants of Arabidopsis thaliana reveal an essential role for eIF(iso)4E during potyvirus infection
-
Lellis, A.D., Kasschau, K.D., Whitham, S.A., and Carrington, J.C. (2002). Loss-of-susceptibility mutants of Arabidopsis thaliana reveal an essential role for eIF(iso)4E during potyvirus infection. Curr. Biol. 12: 1046-1051.
-
(2002)
Curr. Biol
, vol.12
, pp. 1046-1051
-
-
Lellis, A.D.1
Kasschau, K.D.2
Whitham, S.A.3
Carrington, J.C.4
-
33
-
-
33745699398
-
An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana
-
Li, C.F., Pontes, O., El-Shami, M., Henderson, I.R., Bernatavichute, Y.V., Chan, S.W., Lagrange, T., Pikaard, C.S., and Jacobsen, S.E. (2006). An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana. Cell 126: 93-106.
-
(2006)
Cell
, vol.126
, pp. 93-106
-
-
Li, C.F.1
Pontes, O.2
El-Shami, M.3
Henderson, I.R.4
Bernatavichute, Y.V.5
Chan, S.W.6
Lagrange, T.7
Pikaard, C.S.8
Jacobsen, S.E.9
-
34
-
-
0035984059
-
Endogenous and silencing-associated small RNAs in plants
-
Llave, C., Kasschau, K.D., Rector, M.A., and Carrington, J.C. (2002b). Endogenous and silencing-associated small RNAs in plants. Plant Cell 14: 1605-1619.
-
(2002)
Plant Cell
, vol.14
, pp. 1605-1619
-
-
Llave, C.1
Kasschau, K.D.2
Rector, M.A.3
Carrington, J.C.4
-
35
-
-
0037144457
-
Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA
-
Llave, C., Xie, Z., Kasschau, K.D., and Carrington, J.C. (2002a). Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA. Science 297: 2053-2056.
-
(2002)
Science
, vol.297
, pp. 2053-2056
-
-
Llave, C.1
Xie, Z.2
Kasschau, K.D.3
Carrington, J.C.4
-
36
-
-
60149090481
-
Criteria for annotation of plant microRNAs
-
Meyers, B.C., et al. (2008). Criteria for annotation of plant microRNAs. Plant Cell 20: 3186-3190.
-
(2008)
Plant Cell
, vol.20
, pp. 3186-3190
-
-
Meyers, B.C.1
-
37
-
-
41349114789
-
Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 59 terminal nucleotide
-
Mi, S., et al. (2008). Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 59 terminal nucleotide. Cell 133: 116-127.
-
(2008)
Cell
, vol.133
, pp. 116-127
-
-
Mi, S.1
-
38
-
-
46149110289
-
DICER-LIKE2 plays a primary role in transitive silencing of transgenes in Arabidopsis
-
Mlotshwa, S., Pruss, G.J., Peragine, A., Endres, M.W., Li, J., Chen, X., Poethig, R.S., Bowman, L.H., and Vance, V. (2008). DICER-LIKE2 plays a primary role in transitive silencing of transgenes in Arabidopsis. PLoS One 3: e1755.
-
(2008)
Plos One
, vol.3
-
-
Mlotshwa, S.1
Pruss, G.J.2
Peragine, A.3
Endres, M.W.4
Li, J.5
Chen, X.6
Poethig, R.S.7
Bowman, L.H.8
Vance, V.9
-
39
-
-
33845864469
-
RNA silencing of host transcripts by cauliflower mosaic virus requires coordinated action of the four Arabidopsis Dicer-like proteins
-
Moissiard, G., and Voinnet, O. (2006). RNA silencing of host transcripts by cauliflower mosaic virus requires coordinated action of the four Arabidopsis Dicer-like proteins. Proc. Natl. Acad. Sci. USA 103: 19593-19598.
-
(2006)
Proc. Natl. Acad. Sci. Usa
, vol.103
, pp. 19593-19598
-
-
Moissiard, G.1
Voinnet, O.2
-
40
-
-
19944370491
-
Plant virus-derived small interfering RNAs originate predominantly from highly structured single-stranded viral RNAs
-
Molnar, A., Csorba, T., Lakatos, L., Varallyay, E., Lacomme, C., and Burgyan, J. (2005). Plant virus-derived small interfering RNAs originate predominantly from highly structured single-stranded viral RNAs. J. Virol. 79: 7812-7818.
-
(2005)
J. Virol
, vol.79
, pp. 7812-7818
-
-
Molnar, A.1
Csorba, T.2
Lakatos, L.3
Varallyay, E.4
Lacomme, C.5
Burgyan, J.6
-
41
-
-
41149158475
-
Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation
-
Montgomery, T.A., Howell, M.D., Cuperus, J.T., Li, D., Hansen, J.E., Alexander, A.L., Chapman, E.J., Fahlgren, N., Allen, E., and Carrington, J.C. (2008a). Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation. Cell 133: 128-141.
-
(2008)
Cell
, vol.133
, pp. 128-141
-
-
Montgomery, T.A.1
Howell, M.D.2
Cuperus, J.T.3
Li, D.4
Hansen, J.E.5
Alexander, A.L.6
Chapman, E.J.7
Fahlgren, N.8
Allen, E.9
Carrington, J.C.10
-
42
-
-
58149484856
-
AGO1-miR173 complex initiates phased siRNA formation in plants
-
Montgomery, T.A., Yoo, S.J., Fahlgren, N., Gilbert, S.D., Howell, M. D., Sullivan, C.M., Alexander, A., Nguyen, G., Allen, E., Ahn, J.H., and Carrington, J.C. (2008b). AGO1-miR173 complex initiates phased siRNA formation in plants. Proc. Natl. Acad. Sci. USA 105: 20055-20062.
-
(2008)
Proc. Natl. Acad. Sci. Usa
, vol.105
, pp. 20055-20062
-
-
Montgomery, T.A.1
Yoo, S.J.2
Fahlgren, N.3
Gilbert, S.D.4
Howell, M.D.5
Sullivan, C.M.6
Alexander, A.7
Nguyen, G.8
Allen, E.9
Ahn, J.H.10
Carrington, J.C.11
-
43
-
-
0034716907
-
Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance
-
Mourrain, P., et al. (2000). Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance. Cell 101: 533-542.
-
(2000)
Cell
, vol.101
, pp. 533-542
-
-
Mourrain, P.1
-
44
-
-
0037015239
-
CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana
-
Park, W., Li, J., Song, R., Messing, J., and Chen, X. (2002). CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana. Curr. Biol. 12: 1484-1495.
-
(2002)
Curr. Biol
, vol.12
, pp. 1484-1495
-
-
Park, W.1
Li, J.2
Song, R.3
Messing, J.4
Chen, X.5
-
45
-
-
4644286235
-
SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis
-
Peragine, A., Yoshikawa, M., Wu, G., Albrecht, H.L., and Poethig, R.S. (2004). SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis. Genes Dev. 18: 2368-2379.
-
(2004)
Genes Dev
, vol.18
, pp. 2368-2379
-
-
Peragine, A.1
Yoshikawa, M.2
Wu, G.3
Albrecht, H.L.4
Poethig, R.S.5
-
46
-
-
33745690105
-
The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center
-
Pontes, O., Li, C.F., Nunes, P.C., Haag, J., Ream, T., Vitins, A., Jacobsen, S.E., and Pikaard, C.S. (2006). The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center. Cell 126: 79-92.
-
(2006)
Cell
, vol.126
, pp. 79-92
-
-
Pontes, O.1
Li, C.F.2
Nunes, P.C.3
Haag, J.4
Ream, T.5
Vitins, A.6
Jacobsen, S.E.7
Pikaard, C.S.8
-
47
-
-
63449094751
-
Small RNA deep sequencing reveals role for Arabidopsis thaliana RNA-dependent RNA polymerases in viral siRNA biogenesis
-
Qi, X., Bao, F.S., and Xie, Z. (2009). Small RNA deep sequencing reveals role for Arabidopsis thaliana RNA-dependent RNA polymerases in viral siRNA biogenesis. PLoS One 4: e4971.
-
(2009)
Plos One
, vol.4
-
-
Qi, X.1
Bao, F.S.2
Xie, Z.3
-
48
-
-
33750435234
-
Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation
-
Qi, Y., He, X., Wang, X.J., Kohany, O., Jurka, J., and Hannon, G.J. (2006). Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation. Nature 443: 1008-1012.
-
(2006)
Nature
, vol.443
, pp. 1008-1012
-
-
Qi, Y.1
He, X.2
Wang, X.J.3
Kohany, O.4
Jurka, J.5
Hannon, G.J.6
-
49
-
-
29744451772
-
RDR6 has a broad-spectrum but temperature-dependent antiviral defense role in Nicotiana benthamiana
-
Qu, F., Ye, X., Hou, G., Sato, S., Clemente, T.E., and Morris, T.J. (2005). RDR6 has a broad-spectrum but temperature-dependent antiviral defense role in Nicotiana benthamiana. J. Virol. 79: 15209-15217.
-
(2005)
J. Virol
, vol.79
, pp. 15209-15217
-
-
Qu, F.1
Ye, X.2
Hou, G.3
Sato, S.4
Clemente, T.E.5
Morris, T.J.6
-
50
-
-
55749088651
-
Arabidopsis DRB4, AGO1, AGO7, and RDR6 participate in a DCL4-initiated antiviral RNA silencing pathway negatively regulated by DCL1
-
Qu, F., Ye, X., and Morris, T.J. (2008). Arabidopsis DRB4, AGO1, AGO7, and RDR6 participate in a DCL4-initiated antiviral RNA silencing pathway negatively regulated by DCL1. Proc. Natl. Acad. Sci. USA 105: 14732-14737.
-
(2008)
Proc. Natl. Acad. Sci. Usa
, vol.105
, pp. 14732-14737
-
-
Qu, F.1
Ye, X.2
Morris, T.J.3
-
51
-
-
0036645146
-
MicroRNAs in plants
-
Reinhart, B.J., Weinstein, E.G., Rhoades, M.W., Bartel, B., and Bartel, D.P. (2002). MicroRNAs in plants. Genes Dev. 16: 1616-1626.
-
(2002)
Genes Dev
, vol.16
, pp. 1616-1626
-
-
Reinhart, B.J.1
Weinstein, E.G.2
Rhoades, M.W.3
Bartel, B.4
Bartel, D.P.5
-
52
-
-
16244362244
-
A gene expression map of Arabidopsis thaliana development
-
Schmid, M., Davison, T.S., Henz, S.R., Pape, U.J., Demar, M., Vingron, M., Scholkopf, B., Weigel, D., and Lohmann, J.U. (2005). A gene expression map of Arabidopsis thaliana development. Nat. Genet. 37: 501-506.
-
(2005)
Nat. Genet
, vol.37
, pp. 501-506
-
-
Schmid, M.1
Davison, T.S.2
Henz, S.R.3
Pape, U.J.4
Demar, M.5
Vingron, M.6
Scholkopf, B.7
Weigel, D.8
Lohmann, J.U.9
-
53
-
-
26944466621
-
An RNA-dependent RNA polymerase prevents meristem invasion by potato virus X and is required for the activity but not the production of a systemic silencing signal
-
Schwach, F., Vaistij, F.E., Jones, L., and Baulcombe, D.C. (2005). An RNA-dependent RNA polymerase prevents meristem invasion by potato virus X and is required for the activity but not the production of a systemic silencing signal. Plant Physiol. 138: 1842-1852.
-
(2005)
Plant Physiol
, vol.138
, pp. 1842-1852
-
-
Schwach, F.1
Vaistij, F.E.2
Jones, L.3
Baulcombe, D.C.4
-
54
-
-
2442650370
-
The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development
-
Vaucheret, H., Vazquez, F., Crete, P., and Bartel, D.P. (2004). The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. Genes Dev. 18: 1187-1197.
-
(2004)
Genes Dev
, vol.18
, pp. 1187-1197
-
-
Vaucheret, H.1
Vazquez, F.2
Crete, P.3
Bartel, D.P.4
-
55
-
-
4944225347
-
Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs
-
Vazquez, F., Vaucheret, H., Rajagopalan, R., Lepers, C., Gasciolli, V., Mallory, A.C., Hilbert, J.L., Bartel, D.P., and Crete, P. (2004). Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs. Mol. Cell 16: 69-79.
-
(2004)
Mol. Cell
, vol.16
, pp. 69-79
-
-
Vazquez, F.1
Vaucheret, H.2
Rajagopalan, R.3
Lepers, C.4
Gasciolli, V.5
Mallory, A.C.6
Hilbert, J.L.7
Bartel, D.P.8
Crete, P.9
-
56
-
-
26944433784
-
Non-cell autonomous RNA silencing
-
Voinnet, O. (2005). Non-cell autonomous RNA silencing. FEBS Lett. 579: 5858-5871.
-
(2005)
Febs Lett
, vol.579
, pp. 5858-5871
-
-
Voinnet, O.1
-
57
-
-
76249093088
-
RNAi-mediated viral immunity requires amplification of virus-derived siRNAs in Arabidopsis thaliana
-
Wang, X.B., Wu, Q., Ito, T., Cillo, F., Li, W.X., Chen, X., Yu, J.L., and Ding, S.W. (2010). RNAi-mediated viral immunity requires amplification of virus-derived siRNAs in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 107: 484-489.
-
(2010)
Proc. Natl. Acad. Sci. Usa
, vol.107
, pp. 484-489
-
-
Wang, X.B.1
Wu, Q.2
Ito, T.3
Cillo, F.4
Li, W.X.5
Chen, X.6
Yu, J.L.7
Ding, S.W.8
-
58
-
-
67349112845
-
RNA polymerase V transcription guides ARGONAUTE4 to chromatin
-
Wierzbicki, A.T., Ream, T.S., Haag, J.R., and Pikaard, C.S. (2009). RNA polymerase V transcription guides ARGONAUTE4 to chromatin. Nat. Genet. 41: 630-634.
-
(2009)
Nat. Genet
, vol.41
, pp. 630-634
-
-
Wierzbicki, A.T.1
Ream, T.S.2
Haag, J.R.3
Pikaard, C.S.4
-
59
-
-
24644481318
-
DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana
-
Xie, Z., Allen, E., Wilken, A., and Carrington, J.C. (2005). DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 102: 12984-12989.
-
(2005)
Proc. Natl. Acad. Sci. Usa
, vol.102
, pp. 12984-12989
-
-
Xie, Z.1
Allen, E.2
Wilken, A.3
Carrington, J.C.4
-
60
-
-
0035932952
-
An important role of an inducible RNA-dependent RNA polymerase in plant antiviral defense
-
Xie, Z., Fan, B., Chen, C., and Chen, Z. (2001). An important role of an inducible RNA-dependent RNA polymerase in plant antiviral defense. Proc. Natl. Acad. Sci. USA 98: 6516-6521.
-
(2001)
Proc. Natl. Acad. Sci. Usa
, vol.98
, pp. 6516-6521
-
-
Xie, Z.1
Fan, B.2
Chen, C.3
Chen, Z.4
-
61
-
-
19344374219
-
Genetic and functional diversification of small RNA pathways in plants
-
Xie, Z., Johansen, L.K., Gustafson, A.M., Kasschau, K.D., Lellis, A.D., Zilberman, D., Jacobsen, S.E., and Carrington, J.C. (2004). Genetic and functional diversification of small RNA pathways in plants. PLoS Biol. 2: E104.
-
(2004)
Plos Biol
, vol.2
-
-
Xie, Z.1
Johansen, L.K.2
Gustafson, A.M.3
Kasschau, K.D.4
Lellis, A.D.5
Zilberman, D.6
Jacobsen, S.E.7
Carrington, J.C.8
-
62
-
-
1942469337
-
A natural variant of a host RNA-dependent RNA polymerase is associated with increased susceptibility to viruses by Nicotiana benthamiana
-
Yang, S.J., Carter, S.A., Cole, A.B., Cheng, N.H., and Nelson, R.S. (2004). A natural variant of a host RNA-dependent RNA polymerase is associated with increased susceptibility to viruses by Nicotiana benthamiana. Proc. Natl. Acad. Sci. USA 101: 6297-6302.
-
(2004)
Proc. Natl. Acad. Sci. Usa
, vol.101
, pp. 6297-6302
-
-
Yang, S.J.1
Carter, S.A.2
Cole, A.B.3
Cheng, N.H.4
Nelson, R.S.5
-
63
-
-
24944491201
-
A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis
-
Yoshikawa, M., Peragine, A., Park, M.Y., and Poethig, R.S. (2005). A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis. Genes Dev. 19: 2164-2175.
-
(2005)
Genes Dev
, vol.19
, pp. 2164-2175
-
-
Yoshikawa, M.1
Peragine, A.2
Park, M.Y.3
Poethig, R.S.4
-
64
-
-
0037372466
-
Analysis of the involvement of an inducible Arabidopsis RNA-dependent RNA polymerase in antiviral defense
-
Yu, D., Fan, B., MacFarlane, S.A., and Chen, Z. (2003). Analysis of the involvement of an inducible Arabidopsis RNA-dependent RNA polymerase in antiviral defense. Mol. Plant Microbe Interact. 16: 206-216.
-
(2003)
Mol. Plant Microbe Interact
, vol.16
, pp. 206-216
-
-
Yu, D.1
Fan, B.2
Macfarlane, S.A.3
Chen, Z.4
-
65
-
-
0037474126
-
ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation
-
Zilberman, D., Cao, X., and Jacobsen, S.E. (2003). ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science 299: 716-719.
-
(2003)
Science
, vol.299
, pp. 716-719
-
-
Zilberman, D.1
Cao, X.2
Jacobsen, S.E.3
|