Endogenous and silencing-associated small RNAs in plants

Plant Cell

Volumn 14, Issue 7, 2002, Pages 1605-1619

  Llave, Cesar ^a   Kasschau, Kristin D ^a   Rector, Maggie A ^a   Carrington, James C ^a  

^a OREGON STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELLS; GENES; PROTEINS; RNA;

NUCLEOTIDES;

PLANTS (BOTANY);

ANIMALIA; ARABIDOPSIS; EMBRYOPHYTA; TRANSPOSONS;

ARABIDOPSIS PROTEIN; PLANT RNA; SCR PROTEIN, ARABIDOPSIS; SMALL INTERFERING RNA; SPACER DNA; UNTRANSLATED RNA;

ARABIDOPSIS; ARTICLE; CHEMISTRY; CONFORMATION; GENE SILENCING; GENETICS; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; PHYLOGENY; RNA PROCESSING; TOBACCO; TRANSPOSON;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CLONING, MOLECULAR; DNA TRANSPOSABLE ELEMENTS; DNA, INTERGENIC; GENE SILENCING; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PHYLOGENY; RNA PROCESSING, POST-TRANSCRIPTIONAL; RNA, PLANT; RNA, SMALL INTERFERING; RNA, UNTRANSLATED; TOBACCO;

EID: 0035984059     PISSN: 10404651     EISSN: None     Source Type: Journal    
DOI: 10.1105/tpc.003210     Document Type: Article

References (70)

1. Control of developmental timing in Caenorhabditis elegans
2. Heterochronic mutants of the nematode Caenorhabditis elegans
3. A viral suppressor of gene silencing in plants
4. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
5. Control of developmental timing by small temporal RNAs: A paradigm for RNA-mediated regulation of gene expression
6. Double-stranded RNA as a template for gene silencing
7. Role for a bidentate ribonuclease in the initiation step of RNA interference
8. PAT1, a new member of the GRAS family, is involved in phytochrome A signal transduction
9. Viral pathogenicity determinants are suppressors of transgene silencing
10. Activation and suppression of RNA silencing by plant viruses
11. Gene silencing by double-stranded RNA
12. Cloning of the Arabidopsis RTM1 gene, which controls restriction of long-distance movement of tobacco etch virus
13. Analysis of the 5S RNA pool in Arabidopsis thaliana: RNAs are heterogeneous and only two of the genomic 5S loci produce mature 5S RNA
14. Potato virus X amplicons in Arabidopsis mediate genetic and epigenetic gene silencing
15. An RNA-dependent RNA polymerase gene in Arabidopsis is required for posttranscriptional gene silencing mediated by a transgene but not by a virus
16. The Scarecrow gene regulates an asymmetric cell division that is essential for generating the radial organization of the Arabidopsis root
17. RNA interference is mediated by 21- and 22-nucleotide RNAs
18. Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing
19. Micro-RNAs: Small is plentiful
20. A species of small antisense RNA in posttranscriptional gene silencing in plants
21. An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells
22. Argonaute2, a link between genetic and biochemical analyses of RNAi
23. The Short-root gene controls radial patterning of the Arabidopsis root through radial signaling
24. Using CLUSTAL for multiple sequence alignments
25. A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA
26. Silencing on the spot: Induction and suppression of RNA silencing in the Agrobacterium-mediated transient expression system
27. RNA-DNA interactions and DNA methylation in post-transcriptional gene silencing
28. RNA-directed transcriptional gene silencing in plants can be inherited independently of the RNA trigger and requires Met1 for maintenance
29. A counter-defensive strategy of plant viruses: Suppression of posttranscriptional gene silencing
30. Long-distance movement and replication maintenance functions correlate with silencing suppression activity of potyviral HC-Pro
31. Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans
32. Mut-7 of C. elegans, required for transposon silencing and RNA interference, is a homolog of the Werner syndrome helicase and RNaseD
33. Developmental changes due to long-distance movement of a homeobox fusion transcript in tomato
34. A role for the RNase III enzyme CDR-1 in RNA interference and germ line development in Caenorhabditis elegans
35. Macromolecufar trafficking indicated by localization and turnover of sucrose transporters in enucleate sieve elements
36. Identification of novel genes coding for small expressed RNAs
37. An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
38. Transposon diversity in Arabidopsis thaliana
39. An extensive class of small RNAs in Caenorhabditis elegans
40. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
41. RNAi as random degradative PCR: siRNA primers convert mRNA into dsRNAs that are degraded to generate new siRNAs
42. Virus-encoded suppressor of posttranscriptional gene silencing targets a maintenance step in the silencing pathway
43. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
44. RNA: Guiding gene silencing
45. Resistance of RNA-mediated TGS to HC-Pro, a viral suppressor of PTGS, suggests alternative pathways for dsRNA processing
46. The cold shock domain protein LIN-28 controls developmental timing in C. elegans and is regulated by the lin-4 RNA
47. Arabidopsis SCS2 and SCS3 genes are required for posttranscriptional gene silencing and natural virus resistance
48. The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans by blocking LIN-14 protein synthesis after the initiation of translation
49. Transgenes are dispensable for the RNA degradation step of cosuppression
50. The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans
51. Phloem long-distance transport of CmNACP mRNA: Implications for supracellular regulation in plants
52. Molecular biology: Glimpses of a tiny RNA world
53. On the role of RNA amplification in dsRNA-triggered gene silencing
54. Post-transcriptional gene-silencing: RNAs on the attack or on the defense?
55. The Arabidopsis RGA gene encodes a transcriptional regulator repressing the gibberellin signal transduction pathway
56. The lin-41 RBCC gene acts in the C. elegans heterochronic pathway between the let-7 regulatory RNA and the LIN-29 transcription factor
57. EGO-1 is related to RNA-directed RNA polymerase and functions in germ-line development and RNA interference in C. elegans
58. Sno storm in the nucleolus: New roles for myriad small RNPs
59. The rde-1 gene, RNA interference, and transposon silencing in C. elegans
60. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
61. Small nucleolar RNAs guide ribosomal RNA methylation
62. RNA silencing in plants: Defense and counterdefense
63. RNA silencing as a plant immune system against viruses
64. Systemic signalling in gene silencing
65. Suppression of gene silencing: A general strategy used by diverse DNA and RNA viruses of plants
66. RNA-directed DNA methylation
67. Gene silencing as an adaptive defence against viruses
68. Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans
69. Signaling in plants by intercellular RNA and protein movement
70. RNAi: Double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals