-
1
-
-
77955505357
-
Protein-protein interactions essentials: key concepts to building and analyzing interactome networks
-
De Las Rivas, J., Fontanillo, C., Protein-protein interactions essentials: key concepts to building and analyzing interactome networks. PLoS Comput. Biol. 2010, 6, e1000807.
-
(2010)
PLoS Comput. Biol.
, vol.6
-
-
De Las Rivas, J.1
Fontanillo, C.2
-
2
-
-
0032489015
-
The cell as a collection of protein machines: preparing the next generation of molecular biologists
-
Alberts, B., The cell as a collection of protein machines: preparing the next generation of molecular biologists. Cell 1998, 92, 291-294.
-
(1998)
Cell
, vol.92
, pp. 291-294
-
-
Alberts, B.1
-
3
-
-
70349229596
-
Dynamic interactions of proteins in complex networks: a more structured view
-
Stein, A., Pache, R. A., Bernado, P., Pons, M., Aloy, P., Dynamic interactions of proteins in complex networks: a more structured view. FEBS J. 2009, 276, 5390-5405.
-
(2009)
FEBS J.
, vol.276
, pp. 5390-5405
-
-
Stein, A.1
Pache, R.A.2
Bernado, P.3
Pons, M.4
Aloy, P.5
-
4
-
-
33749535603
-
Co-evolution of transcriptional and post-translational cell-cycle regulation
-
Jensen, L. J., Jensen, T. S., de Lichtenberg, U., Brunak, S., Bork, P., Co-evolution of transcriptional and post-translational cell-cycle regulation. Nature 2006, 443, 594-597.
-
(2006)
Nature
, vol.443
, pp. 594-597
-
-
Jensen, L.J.1
Jensen, T.S.2
de Lichtenberg, U.3
Brunak, S.4
Bork, P.5
-
5
-
-
0033786922
-
Protein tyrosine kinase structure and function
-
Hubbard, S. R., Till, J. H., Protein tyrosine kinase structure and function. Annu. Rev. Biochem. 2000, 69, 373-398.
-
(2000)
Annu. Rev. Biochem.
, vol.69
, pp. 373-398
-
-
Hubbard, S.R.1
Till, J.H.2
-
6
-
-
28444460297
-
Global analysis of protein phosphorylation in yeast
-
Ptacek, J., Devgan, G., Michaud, G., Zhu, H. et al., Global analysis of protein phosphorylation in yeast. Nature 2005, 438, 679-684.
-
(2005)
Nature
, vol.438
, pp. 679-684
-
-
Ptacek, J.1
Devgan, G.2
Michaud, G.3
Zhu, H.4
-
7
-
-
0034669210
-
The structural basis for the recognition of acetylated histone H4 by the bromodomain of histone acetyltransferase gcn5p
-
Owen, D. J., Ornaghi, P., Yang, J. C., Lowe, N. et al., The structural basis for the recognition of acetylated histone H4 by the bromodomain of histone acetyltransferase gcn5p. EMBO J. 2000, 19, 6141-6149.
-
(2000)
EMBO J.
, vol.19
, pp. 6141-6149
-
-
Owen, D.J.1
Ornaghi, P.2
Yang, J.C.3
Lowe, N.4
-
8
-
-
0036462601
-
Protein N-glycosylation along the secretory pathway: relationship to organelle topography and function, protein quality control, and cell interactions
-
Roth, J., Protein N-glycosylation along the secretory pathway: relationship to organelle topography and function, protein quality control, and cell interactions. Chem. Rev. 2002, 102, 285-303.
-
(2002)
Chem. Rev.
, vol.102
, pp. 285-303
-
-
Roth, J.1
-
9
-
-
83055180495
-
Protein prenylation: a new mode of host-pathogen interaction
-
Amaya, M., Baranova, A., van Hoek, M. L., Protein prenylation: a new mode of host-pathogen interaction. Biochem. Biophys. Res. Commun. 2011, 416, 1-6.
-
(2011)
Biochem. Biophys. Res. Commun.
, vol.416
, pp. 1-6
-
-
Amaya, M.1
Baranova, A.2
van Hoek, M.L.3
-
10
-
-
4444282070
-
Studying the interactome with the yeast two-hybrid system and mass spectrometry
-
Causier, B., Studying the interactome with the yeast two-hybrid system and mass spectrometry. Mass Spectrom. Rev. 2004, 23, 350-367.
-
(2004)
Mass Spectrom. Rev.
, vol.23
, pp. 350-367
-
-
Causier, B.1
-
11
-
-
0034841844
-
The tandem affinity purification (TAP) method: a general procedure of protein complex purification
-
Puig, O., Caspary, F., Rigaut, G., Rutz, B. et al., The tandem affinity purification (TAP) method: a general procedure of protein complex purification. Methods 2001, 24, 218-229.
-
(2001)
Methods
, vol.24
, pp. 218-229
-
-
Puig, O.1
Caspary, F.2
Rigaut, G.3
Rutz, B.4
-
12
-
-
0032828715
-
A generic protein purification method for protein complex characterization and proteome exploration
-
Rigaut, G., Shevchenko, A., Rutz, B., Wilm, M. et al., A generic protein purification method for protein complex characterization and proteome exploration. Nat. Biotechnol. 1999, 17, 1030-1032.
-
(1999)
Nat. Biotechnol.
, vol.17
, pp. 1030-1032
-
-
Rigaut, G.1
Shevchenko, A.2
Rutz, B.3
Wilm, M.4
-
13
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
Ho, Y., Gruhler, A., Heilbut, A., Bader, G. D. et al., Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 2002, 415, 180-183.
-
(2002)
Nature
, vol.415
, pp. 180-183
-
-
Ho, Y.1
Gruhler, A.2
Heilbut, A.3
Bader, G.D.4
-
14
-
-
34548446793
-
Proteomic analysis of protein complexes
-
Zhou, M., Veenstra, T. D., Proteomic analysis of protein complexes. Proteomics 2007, 7, 2688-2697.
-
(2007)
Proteomics
, vol.7
, pp. 2688-2697
-
-
Zhou, M.1
Veenstra, T.D.2
-
15
-
-
33645813378
-
Mass spectrometry and protein analysis
-
Domon, B., Aebersold, R., Mass spectrometry and protein analysis. Science 2006, 312, 212-217.
-
(2006)
Science
, vol.312
, pp. 212-217
-
-
Domon, B.1
Aebersold, R.2
-
16
-
-
79551523294
-
Interactive proteomics research technologies: recent applications and advances
-
Petschnigg, J., Snider, J., Stagljar, I., Interactive proteomics research technologies: recent applications and advances. Curr. Opin. Biotechnol. 2011, 22, 50-58.
-
(2011)
Curr. Opin. Biotechnol.
, vol.22
, pp. 50-58
-
-
Petschnigg, J.1
Snider, J.2
Stagljar, I.3
-
17
-
-
74849104439
-
Dynamic proteomics in modeling of the living cell. Protein-protein interactions
-
Terentiev, A. A., Moldogazieva, N. T., Shaitan, K. V., Dynamic proteomics in modeling of the living cell. Protein-protein interactions. Biochemistry (Mosc.) 2009, 74, 1586-1607.
-
(2009)
Biochemistry (Mosc.)
, vol.74
, pp. 1586-1607
-
-
Terentiev, A.A.1
Moldogazieva, N.T.2
Shaitan, K.V.3
-
18
-
-
0024406857
-
A novel genetic system to detect protein-protein interactions
-
Fields, S., Song, O., A novel genetic system to detect protein-protein interactions. Nature 1989, 340, 245-246.
-
(1989)
Nature
, vol.340
, pp. 245-246
-
-
Fields, S.1
Song, O.2
-
19
-
-
84856511126
-
Yeast two-hybrid methods and their applications in drug discovery
-
Hamdi, A., Colas, P., Yeast two-hybrid methods and their applications in drug discovery. Trends Pharmacol. Sci. 2012, 33, 109-118.
-
(2012)
Trends Pharmacol. Sci.
, vol.33
, pp. 109-118
-
-
Hamdi, A.1
Colas, P.2
-
20
-
-
43249097241
-
Resolving the network of cell signaling pathways using the evolving yeast two-hybrid system
-
Ratushny, V., Golemis, E., Resolving the network of cell signaling pathways using the evolving yeast two-hybrid system. Biotechniques 2008, 44, 655-662.
-
(2008)
Biotechniques
, vol.44
, pp. 655-662
-
-
Ratushny, V.1
Golemis, E.2
-
21
-
-
41549094923
-
Plant systems biology comes of age
-
Yuan, J. S., Galbraith, D. W., Dai, S. Y., Griffin, P., Stewart, C. N. Jr., Plant systems biology comes of age. Trends Plant Sci. 2008, 13, 165-171.
-
(2008)
Trends Plant Sci.
, vol.13
, pp. 165-171
-
-
Yuan, J.S.1
Galbraith, D.W.2
Dai, S.Y.3
Griffin, P.4
Stewart Jr., C.N.5
-
22
-
-
0035836765
-
A comprehensive two-hybrid analysis to explore the yeast protein interactome
-
Ito, T., Chiba, T., Ozawa, R., Yoshida, M. et al., A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc. Natl. Acad. Sci. USA 2001, 98, 4569-4574.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 4569-4574
-
-
Ito, T.1
Chiba, T.2
Ozawa, R.3
Yoshida, M.4
-
23
-
-
0034628508
-
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
-
Uetz, P., Giot, L., Cagney, G., Mansfield, T. A. et al., A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 2000, 403, 623-627.
-
(2000)
Nature
, vol.403
, pp. 623-627
-
-
Uetz, P.1
Giot, L.2
Cagney, G.3
Mansfield, T.A.4
-
24
-
-
33746673730
-
Yeast two-hybrid contributions to interactome mapping
-
Parrish, J. R., Gulyas, K. D., Finley, R. L. Jr., Yeast two-hybrid contributions to interactome mapping. Curr. Opin. Biotechnol. 2006, 17, 387-393.
-
(2006)
Curr. Opin. Biotechnol.
, vol.17
, pp. 387-393
-
-
Parrish, J.R.1
Gulyas, K.D.2
Finley Jr., R.L.3
-
25
-
-
0028926048
-
Protein-protein interactions: methods for detection and analysis
-
Phizicky, E. M., Fields, S., Protein-protein interactions: methods for detection and analysis. Microbiol. Rev. 1995, 59, 94-123.
-
(1995)
Microbiol. Rev.
, vol.59
, pp. 94-123
-
-
Phizicky, E.M.1
Fields, S.2
-
26
-
-
34247629593
-
Application of protein-fragment complementation assays in cell biology
-
137, 139, 141
-
Remy, I., Michnick, S. W., Application of protein-fragment complementation assays in cell biology. Biotechniques 2007, 42, 137, 139, 141 ((http://www.ncbi.nlm.nih.gov/pubmed/17373475)).
-
(2007)
Biotechniques
, vol.42
-
-
Remy, I.1
Michnick, S.W.2
-
27
-
-
0029126514
-
Analyzing protein-protein interactions using two-hybrid system
-
Bartel, P. L., Fields, S., Analyzing protein-protein interactions using two-hybrid system. Methods Enzymol. 1995, 254, 241-263.
-
(1995)
Methods Enzymol.
, vol.254
, pp. 241-263
-
-
Bartel, P.L.1
Fields, S.2
-
28
-
-
82855181108
-
3D-FE analysis of functionally graded structured dental posts
-
Abu Kasim, N. H., Madfa, A. A., Hamdi, M., Rahbari, G. R., 3D-FE analysis of functionally graded structured dental posts. Dent. Mater. J. 2011, 30, 869-880.
-
(2011)
Dent. Mater. J.
, vol.30
, pp. 869-880
-
-
Abu Kasim, N.H.1
Madfa, A.A.2
Hamdi, M.3
Rahbari, G.R.4
-
29
-
-
80051802020
-
Raf kinases in cancer-roles and therapeutic opportunities
-
Maurer, G., Tarkowski, B., Baccarini, M., Raf kinases in cancer-roles and therapeutic opportunities. Oncogene 2011, 30, 3477-3488.
-
(2011)
Oncogene
, vol.30
, pp. 3477-3488
-
-
Maurer, G.1
Tarkowski, B.2
Baccarini, M.3
-
30
-
-
0028329721
-
Amidrazone analogues of D-ribofuranose as transition-state inhibitors of nucleoside hydrolase
-
Boutellier, M., Horenstein, B. A., Semenyaka, A., Schramm, V. L., Ganem, B., Amidrazone analogues of D-ribofuranose as transition-state inhibitors of nucleoside hydrolase. Biochemistry 1994, 33, 3994-4000.
-
(1994)
Biochemistry
, vol.33
, pp. 3994-4000
-
-
Boutellier, M.1
Horenstein, B.A.2
Semenyaka, A.3
Schramm, V.L.4
Ganem, B.5
-
31
-
-
0032574840
-
A genetic system based on split-ubiquitin for the analysis of interactions between membrane proteins in vivo
-
Stagljar, I., Korostensky, C., Johnsson, N., te Heesen, S., A genetic system based on split-ubiquitin for the analysis of interactions between membrane proteins in vivo. Proc. Natl. Acad. Sci. USA 1998, 95, 5187-5192.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 5187-5192
-
-
Stagljar, I.1
Korostensky, C.2
Johnsson, N.3
te Heesen, S.4
-
32
-
-
0033215038
-
Ternary complex formation between the MADS-box proteins SQUAMOSA, DEFICIENS and GLOBOSA is involved in the control of floral architecture in Antirrhinum majus
-
Egea-Cortines, M., Saedler, H., Sommer, H., Ternary complex formation between the MADS-box proteins SQUAMOSA, DEFICIENS and GLOBOSA is involved in the control of floral architecture in Antirrhinum majus. EMBO J. 1999, 18, 5370-5379.
-
(1999)
EMBO J.
, vol.18
, pp. 5370-5379
-
-
Egea-Cortines, M.1
Saedler, H.2
Sommer, H.3
-
33
-
-
53149142072
-
Boosting tandem affinity purification of plant protein complexes
-
Van Leene, J., Witters, E., Inze, D., De Jaeger, G., Boosting tandem affinity purification of plant protein complexes. Trends Plant Sci. 2008, 13, 517-520.
-
(2008)
Trends Plant Sci.
, vol.13
, pp. 517-520
-
-
Van Leene, J.1
Witters, E.2
Inze, D.3
De Jaeger, G.4
-
34
-
-
84863447582
-
Identification of a potential tumor differentiation factor receptor candidate in prostate cancer cells
-
Sokolowska, I., Woods, A. G., Gawinowicz, M. A., Roy, U., Darie, C. C., Identification of a potential tumor differentiation factor receptor candidate in prostate cancer cells. FEBS J. 2012, 279, 2579-2594.
-
(2012)
FEBS J.
, vol.279
, pp. 2579-2594
-
-
Sokolowska, I.1
Woods, A.G.2
Gawinowicz, M.A.3
Roy, U.4
Darie, C.C.5
-
35
-
-
84855854555
-
Identification of potential tumor differentiation factor (TDF) receptor from steroid-responsive and steroid-resistant breast cancer cells
-
Sokolowska, I., Woods, A. G., Gawinowicz, M. A., Roy, U., Darie, C. C., Identification of potential tumor differentiation factor (TDF) receptor from steroid-responsive and steroid-resistant breast cancer cells. J. Biol. Chem. 2012, 287, 1719-1733.
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 1719-1733
-
-
Sokolowska, I.1
Woods, A.G.2
Gawinowicz, M.A.3
Roy, U.4
Darie, C.C.5
-
36
-
-
0037227959
-
An efficient protein complex purification method for functional proteomics in higher eukaryotes
-
Forler, D., Kocher, T., Rode, M., Gentzel, M. et al., An efficient protein complex purification method for functional proteomics in higher eukaryotes. Nat. Biotechnol. 2003, 21, 89-92.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 89-92
-
-
Forler, D.1
Kocher, T.2
Rode, M.3
Gentzel, M.4
-
37
-
-
34547131554
-
Analysis of protein complexes using mass spectrometry
-
Gingras, A. C., Gstaiger, M., Raught, B., Aebersold, R., Analysis of protein complexes using mass spectrometry. Nat. Rev. Mol. Cell Biol. 2007, 8, 645-654.
-
(2007)
Nat. Rev. Mol. Cell Biol.
, vol.8
, pp. 645-654
-
-
Gingras, A.C.1
Gstaiger, M.2
Raught, B.3
Aebersold, R.4
-
38
-
-
14844314804
-
Advances in protein complex analysis using mass spectrometry
-
Gingras, A. C., Aebersold, R., Raught, B., Advances in protein complex analysis using mass spectrometry. J. Physiol. 2005, 563, 11-21.
-
(2005)
J. Physiol.
, vol.563
, pp. 11-21
-
-
Gingras, A.C.1
Aebersold, R.2
Raught, B.3
-
39
-
-
84934441813
-
Tandem affinity purification combined with mass spectrometry to identify components of protein complexes
-
Kaiser, P., Meierhofer, D., Wang, X., Huang, L., Tandem affinity purification combined with mass spectrometry to identify components of protein complexes. Methods Mol. Biol. 2008, 439, 309-326.
-
(2008)
Methods Mol. Biol.
, vol.439
, pp. 309-326
-
-
Kaiser, P.1
Meierhofer, D.2
Wang, X.3
Huang, L.4
-
40
-
-
33751211249
-
An efficient tandem affinity purification procedure for interaction proteomics in mammalian cells
-
Burckstummer, T., Bennett, K. L., Preradovic, A., Schutze, G. et al., An efficient tandem affinity purification procedure for interaction proteomics in mammalian cells. Nat. Methods 2006, 3, 1013-1019.
-
(2006)
Nat. Methods
, vol.3
, pp. 1013-1019
-
-
Burckstummer, T.1
Bennett, K.L.2
Preradovic, A.3
Schutze, G.4
-
41
-
-
33646831324
-
Protein-protein interactions of tandem affinity purification-tagged protein kinases in rice
-
Rohila, J. S., Chen, M., Chen, S., Chen, J. et al., Protein-protein interactions of tandem affinity purification-tagged protein kinases in rice. Plant J. 2006, 46, 1-13.
-
(2006)
Plant J.
, vol.46
, pp. 1-13
-
-
Rohila, J.S.1
Chen, M.2
Chen, S.3
Chen, J.4
-
42
-
-
63549150374
-
A rice kinase-protein interaction map
-
Ding, X., Richter, T., Chen, M., Fujii, H. et al., A rice kinase-protein interaction map. Plant Physiol. 2009, 149, 1478-1492.
-
(2009)
Plant Physiol.
, vol.149
, pp. 1478-1492
-
-
Ding, X.1
Richter, T.2
Chen, M.3
Fujii, H.4
-
43
-
-
0035987407
-
The post-genomic era of interactive proteomics: facts and perspectives
-
Auerbach, D., Thaminy, S., Hottiger, M. O., Stagljar, I., The post-genomic era of interactive proteomics: facts and perspectives. Proteomics 2002, 2, 611-623.
-
(2002)
Proteomics
, vol.2
, pp. 611-623
-
-
Auerbach, D.1
Thaminy, S.2
Hottiger, M.O.3
Stagljar, I.4
-
44
-
-
0346094408
-
Recent developments in the analysis of protein complexes
-
Dziembowski, A., Seraphin, B., Recent developments in the analysis of protein complexes. FEBS Lett. 2004, 556, 1-6.
-
(2004)
FEBS Lett.
, vol.556
, pp. 1-6
-
-
Dziembowski, A.1
Seraphin, B.2
-
45
-
-
61349113308
-
Purification of low-abundance Arabidopsis plasma-membrane protein complexes and identification of candidate components
-
Qi, Y., Katagiri, F., Purification of low-abundance Arabidopsis plasma-membrane protein complexes and identification of candidate components. Plant J. 2009, 57, 932-944.
-
(2009)
Plant J.
, vol.57
, pp. 932-944
-
-
Qi, Y.1
Katagiri, F.2
-
46
-
-
0037195847
-
The VP16 activation domain interacts with multiple transcriptional components as determined by protein-protein cross-linking in vivo
-
Hall, D. B., Struhl, K., The VP16 activation domain interacts with multiple transcriptional components as determined by protein-protein cross-linking in vivo. J. Biol. Chem. 2002, 277, 46043-46050.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 46043-46050
-
-
Hall, D.B.1
Struhl, K.2
-
47
-
-
22644437896
-
Identification and mapping of protein-protein interactions by a combination of cross-linking, cleavage, and proteomics
-
Trakselis, M. A., Alley, S. C., Ishmael, F. T., Identification and mapping of protein-protein interactions by a combination of cross-linking, cleavage, and proteomics. Bioconjug. Chem. 2005, 16, 741-750.
-
(2005)
Bioconjug. Chem.
, vol.16
, pp. 741-750
-
-
Trakselis, M.A.1
Alley, S.C.2
Ishmael, F.T.3
-
48
-
-
33745742438
-
Chemical cross-linking and mass spectrometry to map three-dimensional protein structures and protein-protein interactions
-
Sinz, A., Chemical cross-linking and mass spectrometry to map three-dimensional protein structures and protein-protein interactions. Mass Spectrom. Rev. 2006, 25, 663-682.
-
(2006)
Mass Spectrom. Rev.
, vol.25
, pp. 663-682
-
-
Sinz, A.1
-
49
-
-
10644254712
-
Identification of protein-protein interactions using in vivo cross-linking and mass spectrometry
-
Vasilescu, J., Guo, X., Kast, J., Identification of protein-protein interactions using in vivo cross-linking and mass spectrometry. Proteomics 2004, 4, 3845-3854.
-
(2004)
Proteomics
, vol.4
, pp. 3845-3854
-
-
Vasilescu, J.1
Guo, X.2
Kast, J.3
-
50
-
-
0037178786
-
mTOR interacts with raptor to form a nutrient-sensitive complex that signals to the cell growth machinery
-
Kim, D. H., Sarbassov, D. D., Ali, S. M., King, J. E. et al., mTOR interacts with raptor to form a nutrient-sensitive complex that signals to the cell growth machinery. Cell 2002, 110, 163-175.
-
(2002)
Cell
, vol.110
, pp. 163-175
-
-
Kim, D.H.1
Sarbassov, D.D.2
Ali, S.M.3
King, J.E.4
-
51
-
-
0028960990
-
Highly specific oxidative cross-linking of proteins mediated by a nickel-peptide complex
-
Brown, K. C., Yang, S. H., Kodadek, T., Highly specific oxidative cross-linking of proteins mediated by a nickel-peptide complex. Biochemistry 1995, 34, 4733-4739.
-
(1995)
Biochemistry
, vol.34
, pp. 4733-4739
-
-
Brown, K.C.1
Yang, S.H.2
Kodadek, T.3
-
52
-
-
0032994428
-
Chemistry for the analysis of protein-protein interactions: rapid and efficient cross-linking triggered by long wavelength light
-
Fancy, D. A., Kodadek, T., Chemistry for the analysis of protein-protein interactions: rapid and efficient cross-linking triggered by long wavelength light. Proc. Natl. Acad. Sci. USA 1999, 96, 6020-6024.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 6020-6024
-
-
Fancy, D.A.1
Kodadek, T.2
-
53
-
-
77952536672
-
A new cross-linking strategy: protein interaction reporter (PIR) technology for protein-protein interaction studies
-
Tang, X., Bruce, J. E., A new cross-linking strategy: protein interaction reporter (PIR) technology for protein-protein interaction studies. Mol. Biosyst. 2010, 6, 939-947.
-
(2010)
Mol. Biosyst.
, vol.6
, pp. 939-947
-
-
Tang, X.1
Bruce, J.E.2
-
54
-
-
0242669340
-
A modular cross-linking approach for exploring protein interactions
-
Trester-Zedlitz, M., Kamada, K., Burley, S. K., Fenyo, D. et al., A modular cross-linking approach for exploring protein interactions. J. Am. Chem. Soc. 2003, 125, 2416-2425.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 2416-2425
-
-
Trester-Zedlitz, M.1
Kamada, K.2
Burley, S.K.3
Fenyo, D.4
-
55
-
-
41449110185
-
Identification of cross-linked peptides from large sequence databases
-
Rinner, O., Seebacher, J., Walzthoeni, T., Mueller, L. N. et al., Identification of cross-linked peptides from large sequence databases. Nat. Methods 2008, 5, 315-318.
-
(2008)
Nat. Methods
, vol.5
, pp. 315-318
-
-
Rinner, O.1
Seebacher, J.2
Walzthoeni, T.3
Mueller, L.N.4
-
56
-
-
24044520965
-
Isotopically coded cleavable cross-linker for studying protein-protein interaction and protein complexes
-
Petrotchenko, E. V., Olkhovik, V. K., Borchers, C. H., Isotopically coded cleavable cross-linker for studying protein-protein interaction and protein complexes. Mol. Cell. Proteomics 2005, 4, 1167-1179.
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 1167-1179
-
-
Petrotchenko, E.V.1
Olkhovik, V.K.2
Borchers, C.H.3
-
57
-
-
11844289583
-
Mass spectrometry identifiable cross-linking strategy for studying protein-protein interactions
-
Tang, X., Munske, G. R., Siems, W. F., Bruce, J. E., Mass spectrometry identifiable cross-linking strategy for studying protein-protein interactions. Anal. Chem. 2005, 77, 311-318.
-
(2005)
Anal. Chem.
, vol.77
, pp. 311-318
-
-
Tang, X.1
Munske, G.R.2
Siems, W.F.3
Bruce, J.E.4
-
58
-
-
33747618271
-
Isotope-coded and affinity-tagged cross-linking (ICATXL): an efficient strategy to probe protein interaction surfaces
-
Chu, F., Mahrus, S., Craik, C. S., Burlingame, A. L., Isotope-coded and affinity-tagged cross-linking (ICATXL): an efficient strategy to probe protein interaction surfaces. J. Am. Chem. Soc. 2006, 128, 10362-10363.
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 10362-10363
-
-
Chu, F.1
Mahrus, S.2
Craik, C.S.3
Burlingame, A.L.4
-
59
-
-
38949159206
-
Determination of protein-RNA interaction sites in the Cbf5-H/ACA guide RNA complex by mass spectrometric protein footprinting
-
Baker, D. L., Seyfried, N. T., Li, H., Orlando, R. et al., Determination of protein-RNA interaction sites in the Cbf5-H/ACA guide RNA complex by mass spectrometric protein footprinting. Biochemistry 2008, 47, 1500-1510.
-
(2008)
Biochemistry
, vol.47
, pp. 1500-1510
-
-
Baker, D.L.1
Seyfried, N.T.2
Li, H.3
Orlando, R.4
-
60
-
-
12344283723
-
Mass spectrometric identification of lysines involved in the interaction of human replication protein a with single-stranded DNA
-
Shell, S. M., Hess, S., Kvaratskhelia, M., Zou, Y., Mass spectrometric identification of lysines involved in the interaction of human replication protein a with single-stranded DNA. Biochemistry 2005, 44, 971-978.
-
(2005)
Biochemistry
, vol.44
, pp. 971-978
-
-
Shell, S.M.1
Hess, S.2
Kvaratskhelia, M.3
Zou, Y.4
-
61
-
-
47749105733
-
Protein-protein interaction detection in vitro and in cells by proximity biotinylation
-
Fernandez-Suarez, M., Chen, T. S., Ting, A. Y., Protein-protein interaction detection in vitro and in cells by proximity biotinylation. J. Am. Chem. Soc. 2008, 130, 9251-9253.
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 9251-9253
-
-
Fernandez-Suarez, M.1
Chen, T.S.2
Ting, A.Y.3
-
62
-
-
38149135803
-
Solution insights into the structure of the Efb/C3 complement inhibitory complex as revealed by lysine acetylation and mass spectrometry
-
Chen, H., Schuster, M. C., Sfyroera, G., Geisbrecht, B. V., Lambris, J. D., Solution insights into the structure of the Efb/C3 complement inhibitory complex as revealed by lysine acetylation and mass spectrometry. J. Am. Soc. Mass Spectrom. 2008, 19, 55-65.
-
(2008)
J. Am. Soc. Mass Spectrom.
, vol.19
, pp. 55-65
-
-
Chen, H.1
Schuster, M.C.2
Sfyroera, G.3
Geisbrecht, B.V.4
Lambris, J.D.5
-
63
-
-
2342569518
-
Identification of an inhibitor-binding site to HIV-1 integrase with affinity acetylation and mass spectrometry
-
Shkriabai, N., Patil, S. S., Hess, S., Budihas, S. R. et al., Identification of an inhibitor-binding site to HIV-1 integrase with affinity acetylation and mass spectrometry. Proc. Natl. Acad. Sci. USA 2004, 101, 6894-6899.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 6894-6899
-
-
Shkriabai, N.1
Patil, S.S.2
Hess, S.3
Budihas, S.R.4
-
64
-
-
33845973017
-
Mapping ERK2-MKP3 binding interfaces by hydrogen/deuterium exchange mass spectrometry
-
Zhou, B., Zhang, J., Liu, S., Reddy, S. et al., Mapping ERK2-MKP3 binding interfaces by hydrogen/deuterium exchange mass spectrometry. J. Biol. Chem. 2006, 281, 38834-38844.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 38834-38844
-
-
Zhou, B.1
Zhang, J.2
Liu, S.3
Reddy, S.4
-
65
-
-
0020493395
-
Hydrogen exchange and the dynamic structure of proteins
-
Woodward, C., Simon, I., Tuchsen, E., Hydrogen exchange and the dynamic structure of proteins. Mol. Cell. Biochem. 1982, 48, 135-160.
-
(1982)
Mol. Cell. Biochem.
, vol.48
, pp. 135-160
-
-
Woodward, C.1
Simon, I.2
Tuchsen, E.3
-
66
-
-
0027529263
-
Determination of amide hydrogen exchange by mass spectrometry: a new tool for protein structure elucidation
-
Zhang, Z., Smith, D. L., Determination of amide hydrogen exchange by mass spectrometry: a new tool for protein structure elucidation. Protein Sci. 1993, 2, 522-531.
-
(1993)
Protein Sci.
, vol.2
, pp. 522-531
-
-
Zhang, Z.1
Smith, D.L.2
-
67
-
-
0033576335
-
A post-genomic challenge: learning to read patterns of protein synthesis
-
Abbott, A., A post-genomic challenge: learning to read patterns of protein synthesis. Nature 1999, 402, 715-720.
-
(1999)
Nature
, vol.402
, pp. 715-720
-
-
Abbott, A.1
-
68
-
-
0034622925
-
Printing proteins as microarrays for high-throughput function determination
-
MacBeath, G., Schreiber, S. L., Printing proteins as microarrays for high-throughput function determination. Science 2000, 289, 1760-1763.
-
(2000)
Science
, vol.289
, pp. 1760-1763
-
-
MacBeath, G.1
Schreiber, S.L.2
-
69
-
-
77649155279
-
Antibody-array interaction mapping, a new method to detect protein complexes applied to the discovery and study of serum amyloid P interactions with kininogen in human plasma
-
Bergsma, D., Chen, S., Buchweitz, J., Gerszten, R., Haab, B. B., Antibody-array interaction mapping, a new method to detect protein complexes applied to the discovery and study of serum amyloid P interactions with kininogen in human plasma. Mol. Cell. Proteomics 2010, 9, 446-456.
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 446-456
-
-
Bergsma, D.1
Chen, S.2
Buchweitz, J.3
Gerszten, R.4
Haab, B.B.5
-
70
-
-
3242701662
-
Studying protein-protein interactions via blot overlay or Far Western blot
-
Hall, R. A., Studying protein-protein interactions via blot overlay or Far Western blot. Methods Mol. Biol. 2004, 261, 167-174.
-
(2004)
Methods Mol. Biol.
, vol.261
, pp. 167-174
-
-
Hall, R.A.1
-
71
-
-
39149110297
-
Detecting protein-protein interactions by Far Western blotting
-
Wu, Y., Li, Q., Chen, X. Z., Detecting protein-protein interactions by Far Western blotting. Nat. Protoc. 2007, 2, 3278-3284.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 3278-3284
-
-
Wu, Y.1
Li, Q.2
Chen, X.Z.3
-
72
-
-
67649208715
-
Detection of protein-protein interactions by Far-Western blotting
-
Machida, K., Mayer, B. J., Detection of protein-protein interactions by Far-Western blotting. Methods Mol. Biol. 2009, 536, 313-329.
-
(2009)
Methods Mol. Biol.
, vol.536
, pp. 313-329
-
-
Machida, K.1
Mayer, B.J.2
-
73
-
-
0029927303
-
CRP-mediated activation of complement in vivo: assessment by measuring circulating complement-C-reactive protein complexes
-
Wolbink, G. J., Brouwer, M. C., Buysmann, S., ten Berge, I. J., Hack, C. E., CRP-mediated activation of complement in vivo: assessment by measuring circulating complement-C-reactive protein complexes. J. Immunol. 1996, 157, 473-479.
-
(1996)
J. Immunol.
, vol.157
, pp. 473-479
-
-
Wolbink, G.J.1
Brouwer, M.C.2
Buysmann, S.3
ten Berge, I.J.4
Hack, C.E.5
-
74
-
-
78651073050
-
Interaction of Sesbania mosaic virus movement protein with the coat protein-implications for viral spread
-
Chowdhury, S. R., Savithri, H. S., Interaction of Sesbania mosaic virus movement protein with the coat protein-implications for viral spread. FEBS J. 2011, 278, 257-272.
-
(2011)
FEBS J.
, vol.278
, pp. 257-272
-
-
Chowdhury, S.R.1
Savithri, H.S.2
-
75
-
-
0019878376
-
Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis
-
Fried, M., Crothers, D. M., Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis. Nucleic Acids Res. 1981, 9, 6505-6525.
-
(1981)
Nucleic Acids Res.
, vol.9
, pp. 6505-6525
-
-
Fried, M.1
Crothers, D.M.2
-
76
-
-
0019877067
-
A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: application to components of the Escherichia coli lactose operon regulatory system
-
Garner, M. M., Revzin, A., A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: application to components of the Escherichia coli lactose operon regulatory system. Nucleic Acids Res. 1981, 9, 3047-3060.
-
(1981)
Nucleic Acids Res.
, vol.9
, pp. 3047-3060
-
-
Garner, M.M.1
Revzin, A.2
-
77
-
-
70249130836
-
Methods for proteomic analysis of transcription factors
-
Jiang, D., Jarrett, H. W., Haskins, W. E., Methods for proteomic analysis of transcription factors. J. Chromatogr. A 2009, 1216, 6881-6889.
-
(2009)
J. Chromatogr. A
, vol.1216
, pp. 6881-6889
-
-
Jiang, D.1
Jarrett, H.W.2
Haskins, W.E.3
-
78
-
-
0024330605
-
Multiwavelength anomalous diffraction as a direct phasing vehicle in macromolecular crystallography
-
Hendrickson, W. A., Horton, J. R., Murthy, H. M., Pahler, A., Smith, J. L., Multiwavelength anomalous diffraction as a direct phasing vehicle in macromolecular crystallography. Basic Life Sci. 1989, 51, 317-324.
-
(1989)
Basic Life Sci.
, vol.51
, pp. 317-324
-
-
Hendrickson, W.A.1
Horton, J.R.2
Murthy, H.M.3
Pahler, A.4
Smith, J.L.5
-
79
-
-
0014674464
-
Electrophoretic characterization of bacterial polyribosomes in agarose-acrylamide composite gels
-
Dahlberg, A. E., Dingman, C. W., Peacock, A. C., Electrophoretic characterization of bacterial polyribosomes in agarose-acrylamide composite gels. J. Mol. Biol. 1969, 41, 139-147.
-
(1969)
J. Mol. Biol.
, vol.41
, pp. 139-147
-
-
Dahlberg, A.E.1
Dingman, C.W.2
Peacock, A.C.3
-
80
-
-
0014884871
-
Molecular interactions of ribosomal components. I. Identification of RNA binding sites for individual 30S ribosomal proteins
-
Schaup, H. W., Green, M., Kurland, C. G., Molecular interactions of ribosomal components. I. Identification of RNA binding sites for individual 30S ribosomal proteins. Mol. Gen. Genet. 1970, 109, 193-205.
-
(1970)
Mol. Gen. Genet.
, vol.109
, pp. 193-205
-
-
Schaup, H.W.1
Green, M.2
Kurland, C.G.3
-
81
-
-
0026353466
-
DNA bending in protein-DNA complexes
-
Crothers, D. M., Gartenberg, M. R., Shrader, T. E., DNA bending in protein-DNA complexes. Methods Enzymol. 1991, 208, 118-146.
-
(1991)
Methods Enzymol.
, vol.208
, pp. 118-146
-
-
Crothers, D.M.1
Gartenberg, M.R.2
Shrader, T.E.3
-
82
-
-
33749250049
-
The identification of nucleic acid-interacting proteins using a simple proteomics-based approach that directly incorporates the electrophoretic mobility shift assay
-
Stead, J. A., Keen, J. N., McDowall, K. J., The identification of nucleic acid-interacting proteins using a simple proteomics-based approach that directly incorporates the electrophoretic mobility shift assay. Mol. Cell. Proteomics 2006, 5, 1697-1702.
-
(2006)
Mol. Cell. Proteomics
, vol.5
, pp. 1697-1702
-
-
Stead, J.A.1
Keen, J.N.2
McDowall, K.J.3
-
83
-
-
0024323026
-
Measurement of protein-DNA interaction parameters by electrophoresis mobility shift assay
-
Fried, M. G., Measurement of protein-DNA interaction parameters by electrophoresis mobility shift assay. Electrophoresis 1989, 10, 366-376.
-
(1989)
Electrophoresis
, vol.10
, pp. 366-376
-
-
Fried, M.G.1
-
84
-
-
84255168888
-
Experimental strategies for the identification of DNA-binding proteins
-
Carey, M. F., Peterson, C. L., Smale, S. T., Experimental strategies for the identification of DNA-binding proteins. Cold Spring Harb. Protoc. 2012, 2012, 18-33.
-
(2012)
Cold Spring Harb. Protoc.
, vol.2012
, pp. 18-33
-
-
Carey, M.F.1
Peterson, C.L.2
Smale, S.T.3
-
85
-
-
0037435030
-
Mass spectrometry-based proteomics
-
Aebersold, R., Mann, M., Mass spectrometry-based proteomics. Nature 2003, 422, 198-207.
-
(2003)
Nature
, vol.422
, pp. 198-207
-
-
Aebersold, R.1
Mann, M.2
-
86
-
-
20444434349
-
Isolation and structural characterization of the Ndh complex from mesophyll and bundle sheath chloroplasts of Zea mays
-
Darie, C. C., Biniossek, M. L., Winter, V., Mutschler, B., Haehnel, W., Isolation and structural characterization of the Ndh complex from mesophyll and bundle sheath chloroplasts of Zea mays. Febs J. 2005, 272, 2705-2716.
-
(2005)
Febs J.
, vol.272
, pp. 2705-2716
-
-
Darie, C.C.1
Biniossek, M.L.2
Winter, V.3
Mutschler, B.4
Haehnel, W.5
-
87
-
-
81855192712
-
Identifying transient protein-protein interactions in EphB2 signaling by blue native PAGE and mass spectrometry
-
Darie, C. C., Deinhardt, K., Zhang, G., Cardasis, H. S. et al., Identifying transient protein-protein interactions in EphB2 signaling by blue native PAGE and mass spectrometry. Proteomics 2011, 11, 4514-4528.
-
(2011)
Proteomics
, vol.11
, pp. 4514-4528
-
-
Darie, C.C.1
Deinhardt, K.2
Zhang, G.3
Cardasis, H.S.4
-
88
-
-
80052749854
-
A proteomic approach to identify plasma proteins in patients with abdominal aortic aneurysm
-
Gamberi, T., Puglia, M., Guidi, F., Magherini, F. et al., A proteomic approach to identify plasma proteins in patients with abdominal aortic aneurysm. Mol. Biosyst. 2011, 7, 2855-2862.
-
(2011)
Mol. Biosyst.
, vol.7
, pp. 2855-2862
-
-
Gamberi, T.1
Puglia, M.2
Guidi, F.3
Magherini, F.4
-
89
-
-
84865334556
-
Mass spectrometry for proteomics-based investigation of oxidative stress and heat shock proteins
-
Silvana Andreescu, E., Hepel, M. (Eds.), American Chemical Society, Washington DC
-
Sokolowska, I., Woods, A. G., Wagner, J., Dorler, J. et al., Mass spectrometry for proteomics-based investigation of oxidative stress and heat shock proteins. in: Silvana Andreescu, E., Hepel, M. (Eds.), ACS Books, Oxidative Stress: Diagnostics and Therapy vol. 1083, American Chemical Society, Washington DC 2011, pp. 341-367.
-
(2011)
ACS Books, Oxidative Stress: Diagnostics and Therapy vol. 1083
, pp. 341-367
-
-
Sokolowska, I.1
Woods, A.G.2
Wagner, J.3
Dorler, J.4
-
90
-
-
45749144385
-
Stable isotopic labeling by amino acids in cultured primary neurons: application to brain-derived neurotrophic factor-dependent phosphotyrosine-associated signaling
-
Spellman, D. S., Deinhardt, K., Darie, C. C., Chao, M. V., Neubert, T. A., Stable isotopic labeling by amino acids in cultured primary neurons: application to brain-derived neurotrophic factor-dependent phosphotyrosine-associated signaling. Mol. Cell. Proteomics 2008, 7, 1067-1076.
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 1067-1076
-
-
Spellman, D.S.1
Deinhardt, K.2
Darie, C.C.3
Chao, M.V.4
Neubert, T.A.5
-
91
-
-
84874000749
-
Blue Native PAGE and mass spectrometry as an approach for the investigation of stable and transient protein-protein interactions
-
Silvana Andreescu, E., Hepel, M. (Eds.), American Chemical Society, Washington DC
-
Woods, A. G., Sokolowska, I., Yakubu, R., Butkiewicz, M. et al., Blue Native PAGE and mass spectrometry as an approach for the investigation of stable and transient protein-protein interactions. in: Silvana Andreescu, E., Hepel, M. (Eds.), ACS Books, Oxidative Stress: Diagnostics and Therapy vol. 1083, American Chemical Society, Washington DC 2011, pp. 369-411.
-
(2011)
ACS Books, Oxidative Stress: Diagnostics and Therapy vol. 1083
, pp. 369-411
-
-
Woods, A.G.1
Sokolowska, I.2
Yakubu, R.3
Butkiewicz, M.4
-
92
-
-
84873985630
-
Automatic determination of disulfide bridges in proteins
-
Sokolowska, I., Ngounou Wetie, A. G., Woods, A. G., Darie, C. C., Automatic determination of disulfide bridges in proteins. J. Lab. Autom. 2012, 17, 408-416.
-
(2012)
J. Lab. Autom.
, vol.17
, pp. 408-416
-
-
Sokolowska, I.1
Ngounou Wetie, A.G.2
Woods, A.G.3
Darie, C.C.4
-
93
-
-
84878326517
-
Automated mass spectrometry-based functional assay for the routine analysis of the secretome
-
doi:10.1177/2211068212454738.
-
Ngounou Wetie, A. G., Sokolowska, I., Woods, A. G., Wormwood, K. L. et al., Automated mass spectrometry-based functional assay for the routine analysis of the secretome. J. Lab. Autom. 2012, doi:10.1177/2211068212454738.
-
(2012)
J. Lab. Autom.
-
-
Ngounou Wetie, A.G.1
Sokolowska, I.2
Woods, A.G.3
Wormwood, K.L.4
-
94
-
-
84865345103
-
Disulfide proteomics for identification of extracellular or secreted proteins
-
Sokolowska, I., Gawinowicz, M. A., Ngounou Wetie, A. G., Darie, C. C., Disulfide proteomics for identification of extracellular or secreted proteins. Electrophoresis 2012, 33, 2527-2536.
-
(2012)
Electrophoresis
, vol.33
, pp. 2527-2536
-
-
Sokolowska, I.1
Gawinowicz, M.A.2
Ngounou Wetie, A.G.3
Darie, C.C.4
-
95
-
-
84864440753
-
Proteomic analysis of plasma membranes isolated from undifferentiated and differentiated HepaRG cells
-
Sokolowska, I., Dorobantu, C., Woods, A. G., Macovei, A. et al., Proteomic analysis of plasma membranes isolated from undifferentiated and differentiated HepaRG cells. Proteome Sci. 2012, 10, 47.
-
(2012)
Proteome Sci.
, vol.10
, pp. 47
-
-
Sokolowska, I.1
Dorobantu, C.2
Woods, A.G.3
Macovei, A.4
-
96
-
-
84857995363
-
Identification of consistent alkylation of cysteine-less peptides in a proteomics experiment
-
Woods, A. G., Sokolowska, I., Darie, C. C., Identification of consistent alkylation of cysteine-less peptides in a proteomics experiment. Biochem. Biophys. Res. Commun. 2012, 419, 305-308.
-
(2012)
Biochem. Biophys. Res. Commun.
, vol.419
, pp. 305-308
-
-
Woods, A.G.1
Sokolowska, I.2
Darie, C.C.3
-
97
-
-
2942588629
-
Structural characterization of fish egg vitelline envelope proteins by mass spectrometry
-
Darie, C. C., Biniossek, M. L., Jovine, L., Litscher, E. S., Wassarman, P. M., Structural characterization of fish egg vitelline envelope proteins by mass spectrometry. Biochemistry 2004, 43, 7459-7478.
-
(2004)
Biochemistry
, vol.43
, pp. 7459-7478
-
-
Darie, C.C.1
Biniossek, M.L.2
Jovine, L.3
Litscher, E.S.4
Wassarman, P.M.5
-
98
-
-
0028848239
-
Native electrophoresis for isolation of mitochondrial oxidative phosphorylation protein complexes
-
Schagger, H., Native electrophoresis for isolation of mitochondrial oxidative phosphorylation protein complexes. Methods Enzymol. 1995, 260, 190-202.
-
(1995)
Methods Enzymol.
, vol.260
, pp. 190-202
-
-
Schagger, H.1
-
99
-
-
0028214450
-
Analysis of molecular masses and oligomeric states of protein complexes by blue native electrophoresis and isolation of membrane protein complexes by two-dimensional native electrophoresis
-
Schagger, H., Cramer, W. A., von Jagow, G., Analysis of molecular masses and oligomeric states of protein complexes by blue native electrophoresis and isolation of membrane protein complexes by two-dimensional native electrophoresis. Anal. Biochem. 1994, 217, 220-230.
-
(1994)
Anal. Biochem.
, vol.217
, pp. 220-230
-
-
Schagger, H.1
Cramer, W.A.2
von Jagow, G.3
-
100
-
-
0026409298
-
Blue native electrophoresis for isolation of membrane protein complexes in enzymatically active form
-
Schagger, H., von Jagow, G., Blue native electrophoresis for isolation of membrane protein complexes in enzymatically active form. Anal. Biochem. 1991, 199, 223-231.
-
(1991)
Anal. Biochem.
, vol.199
, pp. 223-231
-
-
Schagger, H.1
von Jagow, G.2
-
101
-
-
3242754429
-
Proteomic approach to characterize the supramolecular organization of photosystems in higher plants
-
Heinemeyer, J., Eubel, H., Wehmhoner, D., Jansch, L., Braun, H. P., Proteomic approach to characterize the supramolecular organization of photosystems in higher plants. Phytochemistry 2004, 65, 1683-1692.
-
(2004)
Phytochemistry
, vol.65
, pp. 1683-1692
-
-
Heinemeyer, J.1
Eubel, H.2
Wehmhoner, D.3
Jansch, L.4
Braun, H.P.5
-
102
-
-
2642529334
-
Two-dimensional Blue native/SDS gel electrophoresis of multi-protein complexes from whole cellular lysates: a proteomics approach
-
Camacho-Carvajal, M. M., Wollscheid, B., Aebersold, R., Steimle, V., Schamel, W. W., Two-dimensional Blue native/SDS gel electrophoresis of multi-protein complexes from whole cellular lysates: a proteomics approach. Mol. Cell. Proteomics 2004, 3, 176-182.
-
(2004)
Mol. Cell. Proteomics
, vol.3
, pp. 176-182
-
-
Camacho-Carvajal, M.M.1
Wollscheid, B.2
Aebersold, R.3
Steimle, V.4
Schamel, W.W.5
-
103
-
-
84872757179
-
-
Springer-Verlag, Düsseldorf, Germany .
-
Darie, C. C., Shetty, V., Spellman, D. S., Zhang, G. et al., Blue Native PAGE and Mass Spectrometry Analysis of the Ephrin Stimulation-Dependent Protein-Protein Interactions in NG108-EphB2 cells, Springer-Verlag, Düsseldorf, Germany 2008.
-
(2008)
Blue Native PAGE and Mass Spectrometry Analysis of the Ephrin Stimulation-Dependent Protein-Protein Interactions in NG108-EphB2 cells
-
-
Darie, C.C.1
Shetty, V.2
Spellman, D.S.3
Zhang, G.4
-
104
-
-
63349099933
-
Blue native DIGE as a tool for comparative analyses of protein complexes
-
Heinemeyer, J., Scheibe, B., Schmitz, U. K., Braun, H. P., Blue native DIGE as a tool for comparative analyses of protein complexes. J. Proteomics 2009, 72, 539-544.
-
(2009)
J. Proteomics
, vol.72
, pp. 539-544
-
-
Heinemeyer, J.1
Scheibe, B.2
Schmitz, U.K.3
Braun, H.P.4
-
105
-
-
63449114764
-
Two-dimensional native electrophoresis for fluorescent and functional assays of mitochondrial complexes (Chapter 8 )
-
Wumaier, Z., Nubel, E., Wittig, I., Schagger, H., Two-dimensional native electrophoresis for fluorescent and functional assays of mitochondrial complexes (Chapter 8 ). Methods Enzymol. 2009, 456, 153-168.
-
(2009)
Methods Enzymol.
, vol.456
, pp. 153-168
-
-
Wumaier, Z.1
Nubel, E.2
Wittig, I.3
Schagger, H.4
-
106
-
-
38549147576
-
Purified trout egg vitelline envelope proteins VEbeta and VEgamma polymerize into homomeric fibrils from dimers in vitro
-
Darie, C. C., Janssen, W. G., Litscher, E. S., Wassarman, P. M., Purified trout egg vitelline envelope proteins VEbeta and VEgamma polymerize into homomeric fibrils from dimers in vitro. Biochim. Biophys. Acta 2008, 1784, 385-392.
-
(2008)
Biochim. Biophys. Acta
, vol.1784
, pp. 385-392
-
-
Darie, C.C.1
Janssen, W.G.2
Litscher, E.S.3
Wassarman, P.M.4
-
107
-
-
33745943572
-
Detection and analysis of protein-protein interactions in organellar and prokaryotic proteomes by native gel electrophoresis: (membrane) protein complexes and supercomplexes
-
Krause, F., Detection and analysis of protein-protein interactions in organellar and prokaryotic proteomes by native gel electrophoresis: (membrane) protein complexes and supercomplexes. Electrophoresis 2006, 27, 2759-2781.
-
(2006)
Electrophoresis
, vol.27
, pp. 2759-2781
-
-
Krause, F.1
-
108
-
-
2942700102
-
Supramolecular organization of cytochrome c oxidase- and alternative oxidase-dependent respiratory chains in the filamentous fungus Podospora anserina
-
Krause, F., Scheckhuber, C. Q., Werner, A., Rexroth, S. et al., Supramolecular organization of cytochrome c oxidase- and alternative oxidase-dependent respiratory chains in the filamentous fungus Podospora anserina. J. Biol. Chem. 2004, 279, 26453-26461.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 26453-26461
-
-
Krause, F.1
Scheckhuber, C.Q.2
Werner, A.3
Rexroth, S.4
-
109
-
-
33847686377
-
Proteomic and functional alterations in brain mitochondria from Tg2576 mice occur before amyloid plaque deposition
-
Gillardon, F., Rist, W., Kussmaul, L., Vogel, J. et al., Proteomic and functional alterations in brain mitochondria from Tg2576 mice occur before amyloid plaque deposition. Proteomics 2007, 7, 605-616.
-
(2007)
Proteomics
, vol.7
, pp. 605-616
-
-
Gillardon, F.1
Rist, W.2
Kussmaul, L.3
Vogel, J.4
-
110
-
-
42249088081
-
How to analyze protein complexes by 2D blue native SDS-PAGE
-
Reisinger, V., Eichacker, L. A., How to analyze protein complexes by 2D blue native SDS-PAGE. Proteomics 2007, 7 (Suppl 1), 6-16.
-
(2007)
Proteomics
, vol.7
, Issue.SUPPL. 1
, pp. 6-16
-
-
Reisinger, V.1
Eichacker, L.A.2
-
111
-
-
0008215320
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY .
-
Golemis, E., Adams, P. D., Protein-Protein Interactions: A Molecular Cloning Manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY 2005.
-
(2005)
Protein-Protein Interactions: A Molecular Cloning Manual
-
-
Golemis, E.1
Adams, P.D.2
-
112
-
-
35449002345
-
P Moody, T., Laue, T. M., Analytical ultracentrifugation: sedimentation velocity and sedimentation equilibrium
-
Cole, J. L., Lary, J. W., P Moody, T., Laue, T. M., Analytical ultracentrifugation: sedimentation velocity and sedimentation equilibrium. Methods Cell Biol. 2008, 84, 143-179.
-
(2008)
Methods Cell Biol.
, vol.84
, pp. 143-179
-
-
Cole, J.L.1
Lary, J.W.2
-
113
-
-
84873988768
-
Molecular sedimentation in the ultracentrifuge
-
Svedberg, T., Molecular sedimentation in the ultracentrifuge. Endeavour 1947, 6, 89-95.
-
(1947)
Endeavour
, vol.6
, pp. 89-95
-
-
Svedberg, T.1
-
114
-
-
77957897325
-
Analytical ultracentrifugation of colloids
-
Planken, K. L., Colfen, H., Analytical ultracentrifugation of colloids. Nanoscale 2010, 2, 1849-1869.
-
(2010)
Nanoscale
, vol.2
, pp. 1849-1869
-
-
Planken, K.L.1
Colfen, H.2
-
115
-
-
79955580426
-
Histidine-tag-directed chromophores for tracer analyses in the analytical ultracentrifuge
-
Hellman, L. M., Zhao, C., Melikishvili, M., Tao, X. et al., Histidine-tag-directed chromophores for tracer analyses in the analytical ultracentrifuge. Methods 2011, 54, 31-38.
-
(2011)
Methods
, vol.54
, pp. 31-38
-
-
Hellman, L.M.1
Zhao, C.2
Melikishvili, M.3
Tao, X.4
-
116
-
-
1642325812
-
Fluorescence detection for the XLI analytical ultracentrifuge
-
MacGregor, I. K., Anderson, A. L., Laue, T. M., Fluorescence detection for the XLI analytical ultracentrifuge. Biophys. Chem. 2004, 108, 165-185.
-
(2004)
Biophys. Chem.
, vol.108
, pp. 165-185
-
-
MacGregor, I.K.1
Anderson, A.L.2
Laue, T.M.3
-
117
-
-
65649116623
-
NUTS and BOLTS: applications of fluorescence-detected sedimentation
-
Kroe, R. R., Laue, T. M., NUTS and BOLTS: applications of fluorescence-detected sedimentation. Anal. Biochem. 2009, 390, 1-13.
-
(2009)
Anal. Biochem.
, vol.390
, pp. 1-13
-
-
Kroe, R.R.1
Laue, T.M.2
-
118
-
-
0242385405
-
FRET imaging
-
Jares-Erijman, E. A., Jovin, T. M., FRET imaging. Nat. Biotechnol. 2003, 21, 1387-1395.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 1387-1395
-
-
Jares-Erijman, E.A.1
Jovin, T.M.2
-
119
-
-
0017795758
-
Fluorescence energy transfer as a spectroscopic ruler
-
Stryer, L., Fluorescence energy transfer as a spectroscopic ruler. Annu. Rev. Biochem. 1978, 47, 819-846.
-
(1978)
Annu. Rev. Biochem.
, vol.47
, pp. 819-846
-
-
Stryer, L.1
-
120
-
-
49749107169
-
Fluorescence-based methods in the study of protein-protein interactions in living cells
-
Ciruela, F., Fluorescence-based methods in the study of protein-protein interactions in living cells. Curr. Opin. Biotechnol. 2008, 19, 338-343.
-
(2008)
Curr. Opin. Biotechnol.
, vol.19
, pp. 338-343
-
-
Ciruela, F.1
-
121
-
-
65149086780
-
Biosensing and imaging based on bioluminescence resonance energy transfer
-
Xia, Z., Rao, J., Biosensing and imaging based on bioluminescence resonance energy transfer. Curr. Opin. Biotechnol. 2009, 20, 37-44.
-
(2009)
Curr. Opin. Biotechnol.
, vol.20
, pp. 37-44
-
-
Xia, Z.1
Rao, J.2
-
122
-
-
33751547539
-
How many drug targets are there?
-
Overington, J. P., Al-Lazikani, B., Hopkins, A. L., How many drug targets are there? Nat. Rev. Drug Discov. 2006, 5, 993-996.
-
(2006)
Nat. Rev. Drug Discov.
, vol.5
, pp. 993-996
-
-
Overington, J.P.1
Al-Lazikani, B.2
Hopkins, A.L.3
-
123
-
-
72449171138
-
Functional crosstalk between GPCRs: with or without oligomerization
-
Prezeau, L., Rives, M. L., Comps-Agrar, L., Maurel, D. et al., Functional crosstalk between GPCRs: with or without oligomerization. Curr. Opin. Pharmacol. 2010, 10, 6-13.
-
(2010)
Curr. Opin. Pharmacol.
, vol.10
, pp. 6-13
-
-
Prezeau, L.1
Rives, M.L.2
Comps-Agrar, L.3
Maurel, D.4
-
124
-
-
77955058619
-
Lighting up multiprotein complexes: lessons from GPCR oligomerization
-
Ciruela, F., Vilardaga, J. P., Fernandez-Duenas, V., Lighting up multiprotein complexes: lessons from GPCR oligomerization. Trends Biotechnol. 2010, 28, 407-415.
-
(2010)
Trends Biotechnol.
, vol.28
, pp. 407-415
-
-
Ciruela, F.1
Vilardaga, J.P.2
Fernandez-Duenas, V.3
-
125
-
-
48449100036
-
Detection of heteromerization of more than two proteins by sequential BRET-FRET
-
Carriba, P., Navarro, G., Ciruela, F., Ferre, S. et al., Detection of heteromerization of more than two proteins by sequential BRET-FRET. Nat. Methods 2008, 5, 727-733.
-
(2008)
Nat. Methods
, vol.5
, pp. 727-733
-
-
Carriba, P.1
Navarro, G.2
Ciruela, F.3
Ferre, S.4
-
126
-
-
61449236177
-
Analysis of receptor oligomerization by FRAP microscopy
-
Dorsch, S., Klotz, K. N., Engelhardt, S., Lohse, M. J., Bunemann, M., Analysis of receptor oligomerization by FRAP microscopy. Nat. Methods 2009, 6, 225-230.
-
(2009)
Nat. Methods
, vol.6
, pp. 225-230
-
-
Dorsch, S.1
Klotz, K.N.2
Engelhardt, S.3
Lohse, M.J.4
Bunemann, M.5
-
127
-
-
33644559406
-
A visual approach to proteomics
-
Nickell, S., Kofler, C., Leis, A. P., Baumeister, W., A visual approach to proteomics. Nat. Rev. Mol. Cell Biol. 2006, 7, 225-230.
-
(2006)
Nat. Rev. Mol. Cell Biol.
, vol.7
, pp. 225-230
-
-
Nickell, S.1
Kofler, C.2
Leis, A.P.3
Baumeister, W.4
-
128
-
-
33747624926
-
High-throughput fluorescence microscopy for systems biology
-
Pepperkok, R., Ellenberg, J., High-throughput fluorescence microscopy for systems biology. Nat. Rev. Mol. Cell Biol. 2006, 7, 690-696.
-
(2006)
Nat. Rev. Mol. Cell Biol.
, vol.7
, pp. 690-696
-
-
Pepperkok, R.1
Ellenberg, J.2
-
129
-
-
14844330221
-
Structural studies by electron tomography: from cells to molecules
-
Lucic, V., Forster, F., Baumeister, W., Structural studies by electron tomography: from cells to molecules. Annu. Rev. Biochem. 2005, 74, 833-865.
-
(2005)
Annu. Rev. Biochem.
, vol.74
, pp. 833-865
-
-
Lucic, V.1
Forster, F.2
Baumeister, W.3
-
130
-
-
0036089703
-
Single-particle imaging of macromolecules by cryo-electron microscopy
-
Frank, J., Single-particle imaging of macromolecules by cryo-electron microscopy. Annu. Rev. Biophys. Biomol. Struct. 2002, 31, 303-319.
-
(2002)
Annu. Rev. Biophys. Biomol. Struct.
, vol.31
, pp. 303-319
-
-
Frank, J.1
-
131
-
-
0032495513
-
Structure of the alpha beta tubulin dimer by electron crystallography
-
Nogales, E., Wolf, S. G., Downing, K. H., Structure of the alpha beta tubulin dimer by electron crystallography. Nature 1998, 391, 199-203.
-
(1998)
Nature
, vol.391
, pp. 199-203
-
-
Nogales, E.1
Wolf, S.G.2
Downing, K.H.3
-
132
-
-
36849049826
-
Purified mouse egg zona pellucida glycoproteins polymerize into homomeric fibrils under non-denaturing conditions
-
Litscher, E. S., Janssen, W. G., Darie, C. C., Wassarman, P. M., Purified mouse egg zona pellucida glycoproteins polymerize into homomeric fibrils under non-denaturing conditions. J. Cell Physiol. 2008, 214, 153-157.
-
(2008)
J. Cell Physiol.
, vol.214
, pp. 153-157
-
-
Litscher, E.S.1
Janssen, W.G.2
Darie, C.C.3
Wassarman, P.M.4
-
133
-
-
13844297577
-
Imaging protein molecules using FRET and FLIM microscopy
-
Wallrabe, H., Periasamy, A., Imaging protein molecules using FRET and FLIM microscopy. Curr. Opin. Biotechnol. 2005, 16, 19-27.
-
(2005)
Curr. Opin. Biotechnol.
, vol.16
, pp. 19-27
-
-
Wallrabe, H.1
Periasamy, A.2
-
134
-
-
13444306621
-
Time-resolved fluorescence microscopy
-
Suhling, K., French, P. M., Phillips, D., Time-resolved fluorescence microscopy. Photochem. Photobiol. Sci. 2005, 4, 13-22.
-
(2005)
Photochem. Photobiol. Sci.
, vol.4
, pp. 13-22
-
-
Suhling, K.1
French, P.M.2
Phillips, D.3
-
135
-
-
3242721602
-
Confocal microscopy for intracellular co-localization of proteins
-
Miyashita, T., Confocal microscopy for intracellular co-localization of proteins. Methods Mol. Biol. 2004, 261, 399-410.
-
(2004)
Methods Mol. Biol.
, vol.261
, pp. 399-410
-
-
Miyashita, T.1
-
136
-
-
4444243006
-
Investigation of intact protein complexes by mass spectrometry
-
Heck, A. J. R., van den Heuvel, R. H. H., Investigation of intact protein complexes by mass spectrometry. Mass Spectrom. Rev. 2004, 23, 368-389.
-
(2004)
Mass Spectrom. Rev.
, vol.23
, pp. 368-389
-
-
Heck, A.J.R.1
van den Heuvel, R.H.H.2
-
137
-
-
0030621966
-
Studying noncovalent protein complexes by electrospray ionization mass spectrometry
-
Loo, J. A., Studying noncovalent protein complexes by electrospray ionization mass spectrometry. Mass Spectrom. Rev. 1997, 16, 1-23.
-
(1997)
Mass Spectrom. Rev.
, vol.16
, pp. 1-23
-
-
Loo, J.A.1
-
138
-
-
33644555054
-
Proteome survey reveals modularity of the yeast cell machinery
-
Gavin, A. C., Aloy, P., Grandi, P., Krause, R. et al., Proteome survey reveals modularity of the yeast cell machinery. Nature 2006, 440, 631-636.
-
(2006)
Nature
, vol.440
, pp. 631-636
-
-
Gavin, A.C.1
Aloy, P.2
Grandi, P.3
Krause, R.4
-
139
-
-
33645453254
-
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
-
Krogan, N. J., Cagney, G., Yu, H., Zhong, G. et al., Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 2006, 440, 637-643.
-
(2006)
Nature
, vol.440
, pp. 637-643
-
-
Krogan, N.J.1
Cagney, G.2
Yu, H.3
Zhong, G.4
-
140
-
-
0030175393
-
Mass spectrometry of proteins directly from polyacrylamide gels
-
Ogorzalek Loo, R. R., Stevenson, T. I., Mitchell, C., Loo, J. A., Andrews, P. C., Mass spectrometry of proteins directly from polyacrylamide gels. Anal. Chem. 1996, 68, 1910-1917.
-
(1996)
Anal. Chem.
, vol.68
, pp. 1910-1917
-
-
Ogorzalek Loo, R.R.1
Stevenson, T.I.2
Mitchell, C.3
Loo, J.A.4
Andrews, P.C.5
-
141
-
-
77950685492
-
Laser-induced liquid bead ion desorption-MS of protein complexes from blue-native gels, a sensitive top-down proteomic approach
-
Sokolova, L., Wittig, I., Barth, H.-D., Schaegger, H. et al., Laser-induced liquid bead ion desorption-MS of protein complexes from blue-native gels, a sensitive top-down proteomic approach. Proteomics 2010, 10, 1401-1407.
-
(2010)
Proteomics
, vol.10
, pp. 1401-1407
-
-
Sokolova, L.1
Wittig, I.2
Barth, H.-D.3
Schaegger, H.4
-
142
-
-
54349115878
-
Monitoring ligand modulation of protein-protein interactions by mass spectrometry: estrogen receptor α-SRC1
-
Bovet, C., Ruff, M., Eiler, S., Granger, F. et al., Monitoring ligand modulation of protein-protein interactions by mass spectrometry: estrogen receptor α-SRC1. Anal. Chem. 2008, 80, 7833-7839.
-
(2008)
Anal. Chem.
, vol.80
, pp. 7833-7839
-
-
Bovet, C.1
Ruff, M.2
Eiler, S.3
Granger, F.4
-
143
-
-
84856274818
-
Compelling advantages of negative ion mode detection in high-mass MALDI-MS for homomeric protein complexes
-
Madler, S., Barylyuk, K., Erba, E. B., Nieckarz, R. J., Zenobi, R., Compelling advantages of negative ion mode detection in high-mass MALDI-MS for homomeric protein complexes. J. Am. Soc. Mass Spectrom. 2012, 23, 213-224.
-
(2012)
J. Am. Soc. Mass Spectrom.
, vol.23
, pp. 213-224
-
-
Madler, S.1
Barylyuk, K.2
Erba, E.B.3
Nieckarz, R.J.4
Zenobi, R.5
-
144
-
-
77956881617
-
Does chemical cross-linking with NHS esters reflect the chemical equilibrium of protein-protein noncovalent interactions in solution?
-
Maedler, S., Seitz, M., Robinson, J., Zenobi, R., Does chemical cross-linking with NHS esters reflect the chemical equilibrium of protein-protein noncovalent interactions in solution? J. Am. Soc. Mass Spectrom. 2010, 21, 1775-1783.
-
(2010)
J. Am. Soc. Mass Spectrom.
, vol.21
, pp. 1775-1783
-
-
Maedler, S.1
Seitz, M.2
Robinson, J.3
Zenobi, R.4
-
145
-
-
34250710634
-
Sizing large proteins and protein complexes by electrospray ionization mass spectrometry and ion mobility
-
Kaddis, C. S., Lomeli, S. H., Yin, S., Berhane, B. et al., Sizing large proteins and protein complexes by electrospray ionization mass spectrometry and ion mobility. J. Am. Soc. Mass Spectrom. 2007, 18, 1206-1216.
-
(2007)
J. Am. Soc. Mass Spectrom.
, vol.18
, pp. 1206-1216
-
-
Kaddis, C.S.1
Lomeli, S.H.2
Yin, S.3
Berhane, B.4
-
147
-
-
20444486424
-
Electrospray ionization mass spectrometry and ion mobility analysis of the 20S proteasome complex
-
Loo, J. A., Berhane, B., Kaddis, C. S., Wooding, K. M. et al., Electrospray ionization mass spectrometry and ion mobility analysis of the 20S proteasome complex. J. Am. Soc. Mass Spectrom. 2005, 16, 998-1008.
-
(2005)
J. Am. Soc. Mass Spectrom.
, vol.16
, pp. 998-1008
-
-
Loo, J.A.1
Berhane, B.2
Kaddis, C.S.3
Wooding, K.M.4
-
148
-
-
33748368713
-
Mass measurements of increased accuracy resolve heterogeneous populations of intact ribosomes
-
McKay, A. R., Ruotolo, B. T., Ilag, L. L., Robinson, C. V., Mass measurements of increased accuracy resolve heterogeneous populations of intact ribosomes. J. Am. Chem. Soc. 2006, 128, 11433-11442.
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 11433-11442
-
-
McKay, A.R.1
Ruotolo, B.T.2
Ilag, L.L.3
Robinson, C.V.4
-
149
-
-
56149087277
-
Native mass spectrometry: a bridge between interactomics and structural biology
-
Heck, A. J. R., Native mass spectrometry: a bridge between interactomics and structural biology. Nat. Methods 2008, 5, 927-933.
-
(2008)
Nat. Methods
, vol.5
, pp. 927-933
-
-
Heck, A.J.R.1
-
150
-
-
57449083256
-
Mass spectrometry reveals modularity and a complete subunit interaction map of the eukaryotic translation factor eIF3
-
Zhou, M., Sandercock, A. M., Fraser, C. S., Ridlova, G. et al., Mass spectrometry reveals modularity and a complete subunit interaction map of the eukaryotic translation factor eIF3. Proc. Natl. Acad. Sci. USA 2008, 105, 18139-18144.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 18139-18144
-
-
Zhou, M.1
Sandercock, A.M.2
Fraser, C.S.3
Ridlova, G.4
-
151
-
-
79954538169
-
Revealing the quaternary structure of a heterogeneous noncovalent protein complex through surface-induced dissociation
-
Blackwell, A. E., Dodds, E. D., Bandarian, V., Wysocki, V. H., Revealing the quaternary structure of a heterogeneous noncovalent protein complex through surface-induced dissociation. Anal. Chem. 2011, 83, 2862-2865.
-
(2011)
Anal. Chem.
, vol.83
, pp. 2862-2865
-
-
Blackwell, A.E.1
Dodds, E.D.2
Bandarian, V.3
Wysocki, V.H.4
-
152
-
-
33750971747
-
Top-down ESI-ECD-FT-ICR mass spectrometry localizes noncovalent protein-ligand binding sites
-
Xie, Y., Zhang, J., Yin, S., Loo, J. A., Top-down ESI-ECD-FT-ICR mass spectrometry localizes noncovalent protein-ligand binding sites. J. Am. Chem. Soc. 2006, 128, 14432-14433.
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 14432-14433
-
-
Xie, Y.1
Zhang, J.2
Yin, S.3
Loo, J.A.4
-
153
-
-
80052542626
-
Mapping a noncovalent protein-peptide interface by top-down FTICR mass spectrometry using electron capture dissociation
-
Clarke, D. J., Murray, E., Hupp, T., Mackay, C. L., Langridge-Smith, P. R. R., Mapping a noncovalent protein-peptide interface by top-down FTICR mass spectrometry using electron capture dissociation. J. Am. Soc. Mass Spectrom. 2011, 22, 1432-1440.
-
(2011)
J. Am. Soc. Mass Spectrom.
, vol.22
, pp. 1432-1440
-
-
Clarke, D.J.1
Murray, E.2
Hupp, T.3
Mackay, C.L.4
Langridge-Smith, P.R.R.5
-
154
-
-
80755159121
-
Heme binding in gas-phase holo-myoglobin cations: distal becomes proximal?
-
Enyenihi, A. A., Yang, H., Ytterberg, A. J., Lyutvinskiy, Y., Zubarev, R. A., Heme binding in gas-phase holo-myoglobin cations: distal becomes proximal? J. Am. Soc. Mass Spectrom. 2011, 22, 1763-1770.
-
(2011)
J. Am. Soc. Mass Spectrom.
, vol.22
, pp. 1763-1770
-
-
Enyenihi, A.A.1
Yang, H.2
Ytterberg, A.J.3
Lyutvinskiy, Y.4
Zubarev, R.A.5
-
155
-
-
78649529358
-
Native electrospray and electron-capture dissociation in FTICR mass spectrometry provide top-down sequencing of a protein component in an intact protein assembly
-
Zhang, H., Cui, W., Wen, J., Blankenship, R. E., Gross, M. L., Native electrospray and electron-capture dissociation in FTICR mass spectrometry provide top-down sequencing of a protein component in an intact protein assembly. J. Am. Soc. Mass Spectrom. 2010, 21, 1966-1968.
-
(2010)
J. Am. Soc. Mass Spectrom.
, vol.21
, pp. 1966-1968
-
-
Zhang, H.1
Cui, W.2
Wen, J.3
Blankenship, R.E.4
Gross, M.L.5
-
156
-
-
0034329604
-
Separation and detection of intact noncovalent protein complexes from mixtures by on-line capillary isoelectric focusing-mass spectrometry
-
Martinovic, S., Berger, S. J., Pasa-Tolic, L., Smith, R. D., Separation and detection of intact noncovalent protein complexes from mixtures by on-line capillary isoelectric focusing-mass spectrometry. Anal. Chem. 2000, 72, 5356-5360.
-
(2000)
Anal. Chem.
, vol.72
, pp. 5356-5360
-
-
Martinovic, S.1
Berger, S.J.2
Pasa-Tolic, L.3
Smith, R.D.4
-
157
-
-
0037172803
-
Stoichiometries of protein-protein/DNA binding and conformational changes for the transition-state regulator AbrB measured by pseudo cell-size exclusion chromatography-mass spectrometry
-
Cavanagh, J., Thompson, R., Bobay, B., Benson, L. M., Naylor, S., Stoichiometries of protein-protein/DNA binding and conformational changes for the transition-state regulator AbrB measured by pseudo cell-size exclusion chromatography-mass spectrometry. Biochemistry 2002, 41, 7859-7865.
-
(2002)
Biochemistry
, vol.41
, pp. 7859-7865
-
-
Cavanagh, J.1
Thompson, R.2
Bobay, B.3
Benson, L.M.4
Naylor, S.5
-
158
-
-
41149115712
-
Direct screening of natural product extracts using mass spectrometry
-
Vu, H., Pham, N. B., Quinn, R. J., Direct screening of natural product extracts using mass spectrometry. J. Biomol. Screen. 2008, 13, 265-275.
-
(2008)
J. Biomol. Screen.
, vol.13
, pp. 265-275
-
-
Vu, H.1
Pham, N.B.2
Quinn, R.J.3
-
159
-
-
80052318913
-
Direct ionization of large proteins and protein complexes by desorption electrospray ionization-mass spectrometry
-
Ferguson, C. N., Benchaar, S. A., Miao, Z., Loo, J. A., Chen, H., Direct ionization of large proteins and protein complexes by desorption electrospray ionization-mass spectrometry. Anal. Chem. 2011, 83, 6468-6473.
-
(2011)
Anal. Chem.
, vol.83
, pp. 6468-6473
-
-
Ferguson, C.N.1
Benchaar, S.A.2
Miao, Z.3
Loo, J.A.4
Chen, H.5
-
160
-
-
5644249240
-
Mass spectrometry sampling under ambient conditions with desorption electrospray ionization
-
Takats, Z., Wiseman, J. M., Gologan, B., Cooks, R. G., Mass spectrometry sampling under ambient conditions with desorption electrospray ionization. Science 2004, 306, 471-473.
-
(2004)
Science
, vol.306
, pp. 471-473
-
-
Takats, Z.1
Wiseman, J.M.2
Gologan, B.3
Cooks, R.G.4
-
161
-
-
0035298817
-
Supercharged protein and peptide ions formed by electrospray ionization
-
Iavarone, A. T., Jurchen, J. C., Williams, E. R., Supercharged protein and peptide ions formed by electrospray ionization. Anal. Chem. 2001, 73, 1455-1460.
-
(2001)
Anal. Chem.
, vol.73
, pp. 1455-1460
-
-
Iavarone, A.T.1
Jurchen, J.C.2
Williams, E.R.3
-
162
-
-
62149129695
-
Increasing charge while preserving noncovalent protein complexes for ESI-MS
-
Lomeli, S. H., Yin, S., Ogorzalek Loo, R. R., Loo, J. A., Increasing charge while preserving noncovalent protein complexes for ESI-MS. J. Am. Soc. Mass Spectrom. 2009, 20, 593-596.
-
(2009)
J. Am. Soc. Mass Spectrom.
, vol.20
, pp. 593-596
-
-
Lomeli, S.H.1
Yin, S.2
Ogorzalek Loo, R.R.3
Loo, J.A.4
-
163
-
-
73449084419
-
New reagents for increasing ESI multiple charging of proteins and protein complexes
-
Lomeli, S. H., Peng, I. X., Yin, S., Ogorzalek Loo, R. R., Loo, J. A., New reagents for increasing ESI multiple charging of proteins and protein complexes. J. Am. Soc. Mass Spectrom. 2010, 21, 127-131.
-
(2010)
J. Am. Soc. Mass Spectrom.
, vol.21
, pp. 127-131
-
-
Lomeli, S.H.1
Peng, I.X.2
Yin, S.3
Ogorzalek Loo, R.R.4
Loo, J.A.5
-
164
-
-
77958100537
-
Top-down mass spectrometry of supercharged native protein-ligand complexes
-
Yin, S., Loo, J. A., Top-down mass spectrometry of supercharged native protein-ligand complexes. Int. J. Mass Spectrom. 2011, 300, 118-122.
-
(2011)
Int. J. Mass Spectrom.
, vol.300
, pp. 118-122
-
-
Yin, S.1
Loo, J.A.2
-
165
-
-
33744816815
-
Subunit architecture of multimeric complexes isolated directly from cells
-
Hernandez, H., Dziembowski, A., Taverner, T., Seraphin, B., Robinson, C. V., Subunit architecture of multimeric complexes isolated directly from cells. EMBO Rep. 2006, 7, 605-610.
-
(2006)
EMBO Rep.
, vol.7
, pp. 605-610
-
-
Hernandez, H.1
Dziembowski, A.2
Taverner, T.3
Seraphin, B.4
Robinson, C.V.5
-
166
-
-
33749240797
-
Probing genuine strong interactions and post-translational modifications in the heterogeneous yeast exosome protein complex
-
Synowsky, S. A., van den Heuvel, R. H. H., Mohammed, S., Pijnappel, W. W. M. P., Heck, A. J. R., Probing genuine strong interactions and post-translational modifications in the heterogeneous yeast exosome protein complex. Mol. Cell. Proteomics 2006, 5, 1581-1592.
-
(2006)
Mol. Cell. Proteomics
, vol.5
, pp. 1581-1592
-
-
Synowsky, S.A.1
van den Heuvel, R.H.H.2
Mohammed, S.3
Pijnappel, W.W.M.P.4
Heck, A.J.R.5
-
167
-
-
58149344947
-
Comparative multiplexed mass spectrometric analyses of endogenously expressed yeast nuclear and cytoplasmic exosomes
-
Synowsky, S. A., van Wijk, M., Raijmakers, R., Heck, A. J. R., Comparative multiplexed mass spectrometric analyses of endogenously expressed yeast nuclear and cytoplasmic exosomes. J. Mol. Biol. 2009, 385, 1300-1313.
-
(2009)
J. Mol. Biol.
, vol.385
, pp. 1300-1313
-
-
Synowsky, S.A.1
van Wijk, M.2
Raijmakers, R.3
Heck, A.J.R.4
-
168
-
-
79961226780
-
An introduction to membrane proteins
-
Hedin, L. E., Illergård, K., Elofsson, A., An introduction to membrane proteins. J. Proteome Res. 2011, 10, 3324-3331.
-
(2011)
J. Proteome Res.
, vol.10
, pp. 3324-3331
-
-
Hedin, L.E.1
Illergård, K.2
Elofsson, A.3
-
169
-
-
0036717194
-
The druggable genome
-
Hopkins, A. L., Groom, C. R., The druggable genome. Nat. Rev. Drug Discov. 2002, 1, 727-730.
-
(2002)
Nat. Rev. Drug Discov.
, vol.1
, pp. 727-730
-
-
Hopkins, A.L.1
Groom, C.R.2
-
170
-
-
47249106965
-
Micelles protect membrane complexes from solution to vacuum
-
Barrera, N. P., Di Bartolo, N., Booth, P. J., Robinson, C. V., Micelles protect membrane complexes from solution to vacuum. Science 2008, 321, 243-246.
-
(2008)
Science
, vol.321
, pp. 243-246
-
-
Barrera, N.P.1
Di Bartolo, N.2
Booth, P.J.3
Robinson, C.V.4
-
171
-
-
79959456892
-
Advances in the mass spectrometry of membrane proteins: from individual proteins to intact complexes
-
Barrera, N. P., Robinson, C. V., Advances in the mass spectrometry of membrane proteins: from individual proteins to intact complexes. Ann. Rev. Biochem. 2011, 80, 247-271.
-
(2011)
Ann. Rev. Biochem.
, vol.80
, pp. 247-271
-
-
Barrera, N.P.1
Robinson, C.V.2
-
172
-
-
80054844184
-
Mass spectrometry of intact V-type ATPases reveals bound lipids and the effects of nucleotide binding
-
Zhou, M., Morgner, N., Barrera, N. P., Politis, A. et al., Mass spectrometry of intact V-type ATPases reveals bound lipids and the effects of nucleotide binding. Science 2011, 334, 380-385.
-
(2011)
Science
, vol.334
, pp. 380-385
-
-
Zhou, M.1
Morgner, N.2
Barrera, N.P.3
Politis, A.4
-
173
-
-
84874000506
-
The separation of substances on the basis of their molecular weights, using columns of starch and water
-
Lathe, G. H., Ruthven, C. R., The separation of substances on the basis of their molecular weights, using columns of starch and water. Biochem. J. 1955, 62, 665-674.
-
(1955)
Biochem. J.
, vol.62
, pp. 665-674
-
-
Lathe, G.H.1
Ruthven, C.R.2
-
174
-
-
84858984601
-
Unraveling the early events of amyloid-beta protein (Abeta) aggregation: techniques for the determination of Abeta aggregate size
-
Pryor, N. E., Moss, M. A., Hestekin, C. N., Unraveling the early events of amyloid-beta protein (Abeta) aggregation: techniques for the determination of Abeta aggregate size. Int. J. Mol. Sci. 2012, 13, 3038-3072.
-
(2012)
Int. J. Mol. Sci.
, vol.13
, pp. 3038-3072
-
-
Pryor, N.E.1
Moss, M.A.2
Hestekin, C.N.3
-
175
-
-
0030571043
-
Size-exclusion chromatography with on-line light-scattering, absorbance, and refractive index detectors for studying proteins and their interactions
-
Wen, J., Arakawa, T., Philo, J. S., Size-exclusion chromatography with on-line light-scattering, absorbance, and refractive index detectors for studying proteins and their interactions. Anal. Biochem. 1996, 240, 155-166.
-
(1996)
Anal. Biochem.
, vol.240
, pp. 155-166
-
-
Wen, J.1
Arakawa, T.2
Philo, J.S.3
-
176
-
-
0030997688
-
Validation of the determination of copper and zinc in blood plasma and urine by ICP MS with cross-flow and direct injection nebulization
-
Szpunar, J., Bettmer, J., Robert, M., Chassaigne, H. et al., Validation of the determination of copper and zinc in blood plasma and urine by ICP MS with cross-flow and direct injection nebulization. Talanta 1997, 44, 1389-1396.
-
(1997)
Talanta
, vol.44
, pp. 1389-1396
-
-
Szpunar, J.1
Bettmer, J.2
Robert, M.3
Chassaigne, H.4
-
177
-
-
33749372201
-
Role of analytical ultracentrifugation in assessing the aggregation of protein biopharmaceuticals
-
Berkowitz, S. A., Role of analytical ultracentrifugation in assessing the aggregation of protein biopharmaceuticals. AAPS J. 2006, 8, E590-E605.
-
(2006)
AAPS J.
, vol.8
-
-
Berkowitz, S.A.1
-
178
-
-
77049126857
-
Size-exclusion chromatography can identify faster-associating protein complexes and evaluate design strategies
-
Mayer, C. L., Snyder, W. K., Swietlicka, M. A., Vanschoiack, A. D. et al., Size-exclusion chromatography can identify faster-associating protein complexes and evaluate design strategies. BMC Res. Notes 2009, 2, 135.
-
(2009)
BMC Res. Notes
, vol.2
, pp. 135
-
-
Mayer, C.L.1
Snyder, W.K.2
Swietlicka, M.A.3
Vanschoiack, A.D.4
-
179
-
-
0034731329
-
DNA binding and protein-protein interaction sites in MutS, a mismatched DNA recognition protein from Thermus thermophilus HB8
-
Tachiki, H., Kato, R., Kuramitsu, S., DNA binding and protein-protein interaction sites in MutS, a mismatched DNA recognition protein from Thermus thermophilus HB8. J. Biol. Chem. 2000, 275, 40703-40709.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 40703-40709
-
-
Tachiki, H.1
Kato, R.2
Kuramitsu, S.3
-
180
-
-
84864345103
-
In silico study of interaction between rice proteins enhanced disease susceptibility 1 and phytoalexin deficient 4, the regulators of salicylic acid signalling pathway
-
Singh, I., Shah, K., In silico study of interaction between rice proteins enhanced disease susceptibility 1 and phytoalexin deficient 4, the regulators of salicylic acid signalling pathway. J. Biosci. 2012, 37, 563-571.
-
(2012)
J. Biosci.
, vol.37
, pp. 563-571
-
-
Singh, I.1
Shah, K.2
-
181
-
-
0029930504
-
Prediction of potential protein-protein interaction sites from amino acid sequence. Identification of a fibrin polymerization site
-
Kini, R. M., Evans, H. J., Prediction of potential protein-protein interaction sites from amino acid sequence. Identification of a fibrin polymerization site. FEBS Lett. 1996, 385, 81-86.
-
(1996)
FEBS Lett.
, vol.385
, pp. 81-86
-
-
Kini, R.M.1
Evans, H.J.2
-
182
-
-
0030821675
-
Correlated mutations contain information about protein-protein interaction
-
Pazos, F., Helmer-Citterich, M., Ausiello, G., Valencia, A., Correlated mutations contain information about protein-protein interaction. J. Mol. Biol. 1997, 271, 511-523.
-
(1997)
J. Mol. Biol.
, vol.271
, pp. 511-523
-
-
Pazos, F.1
Helmer-Citterich, M.2
Ausiello, G.3
Valencia, A.4
-
183
-
-
0035023445
-
Predicting protein-protein interactions from primary structure
-
Bock, J. R., Gough, D. A., Predicting protein-protein interactions from primary structure. Bioinformatics 2001, 17, 455-460.
-
(2001)
Bioinformatics
, vol.17
, pp. 455-460
-
-
Bock, J.R.1
Gough, D.A.2
-
184
-
-
0038620469
-
Integrative approach for computationally inferring protein domain interactions
-
Ng, S. K., Zhang, Z., Tan, S. H., Integrative approach for computationally inferring protein domain interactions. Bioinformatics 2003, 19, 923-929.
-
(2003)
Bioinformatics
, vol.19
, pp. 923-929
-
-
Ng, S.K.1
Zhang, Z.2
Tan, S.H.3
-
185
-
-
0037245913
-
BIND: the Biomolecular Interaction Network Database
-
Bader, G. D., Betel, D., Hogue, C. W., BIND: the Biomolecular Interaction Network Database. Nucleic Acids Res. 2003, 31, 248-250.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 248-250
-
-
Bader, G.D.1
Betel, D.2
Hogue, C.W.3
-
186
-
-
0036088133
-
DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions
-
Xenarios, I., Salwinski, L., Duan, X. J., Higney, P. et al., DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions. Nucleic Acids Res. 2002, 30, 303-305.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 303-305
-
-
Xenarios, I.1
Salwinski, L.2
Duan, X.J.3
Higney, P.4
-
187
-
-
0037264524
-
The GRID: the General Repository for Interaction Datasets
-
Breitkreutz, B. J., Stark, C., Tyers, M., The GRID: the General Repository for Interaction Datasets. Genome Biol. 2003, 4, R23.
-
(2003)
Genome Biol.
, vol.4
-
-
Breitkreutz, B.J.1
Stark, C.2
Tyers, M.3
-
188
-
-
9144256665
-
Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms
-
Christie, K. R., Weng, S., Balakrishnan, R., Costanzo, M. C. et al., Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms. Nucleic Acids Res. 2004, 32, D311-D314.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Christie, K.R.1
Weng, S.2
Balakrishnan, R.3
Costanzo, M.C.4
-
189
-
-
9144236198
-
Human protein reference database as a discovery resource for proteomics
-
Peri, S., Navarro, J. D., Kristiansen, T. Z., Amanchy, R. et al., Human protein reference database as a discovery resource for proteomics. Nucleic Acids Res. 2004, 32, D497-501.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Peri, S.1
Navarro, J.D.2
Kristiansen, T.Z.3
Amanchy, R.4
-
190
-
-
0037464588
-
A vision for the future of genomics research
-
Collins, F. S., Green, E. D., Guttmacher, A. E., Guyer, M. S., A vision for the future of genomics research. Nature 2003, 422, 835-847.
-
(2003)
Nature
, vol.422
, pp. 835-847
-
-
Collins, F.S.1
Green, E.D.2
Guttmacher, A.E.3
Guyer, M.S.4
|