메뉴 건너뛰기




Volumn 17, Issue 5, 2001, Pages 455-460

Predicting protein-protein interactions from primary structure

Author keywords

[No Author keywords available]

Indexed keywords

CELL PROTEIN; GENE PRODUCT;

EID: 0035023445     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/17.5.455     Document Type: Article
Times cited : (481)

References (42)
  • 2
    • 0015859467 scopus 로고
    • Principles that govern the folding of protein chains
    • Anfinsen, C.B. (1973) Principles that govern the folding of protein chains. Science, 181, 223-230.
    • (1973) Science , vol.181 , pp. 223-230
    • Anfinsen, C.B.1
  • 3
    • 0033576589 scopus 로고    scopus 로고
    • The promise of proteomics
    • Anonymous (1999) The promise of proteomics. Nature, 402, 703.
    • (1999) Nature , vol.402 , pp. 703
  • 5
    • 0033931867 scopus 로고    scopus 로고
    • Assessing the accuracy of prediction algorithms for classification: An overview
    • Baldi, P., Brunak, S., Chauvin, Y., Andersen, C.A. and Nielsen, H. (2000) Assessing the accuracy of prediction algorithms for classification: an overview. Bioinformatics, 16, 412-424.
    • (2000) Bioinformatics , vol.16 , pp. 412-424
    • Baldi, P.1    Brunak, S.2    Chauvin, Y.3    Andersen, C.A.4    Nielsen, H.5
  • 6
    • 0004062277 scopus 로고    scopus 로고
    • The yeast two-hybrid system
    • Oxford University Press, New York
    • Bartel, P.L. and Fields, S. (eds) (1997) The yeast two-hybrid system. In Advances in Molecular Biology. Oxford University Press, New York.
    • (1997) Advances in Molecular Biology
    • Bartel, P.L.1    Fields, S.2
  • 8
    • 0032784646 scopus 로고    scopus 로고
    • Proteomics: Quantitative and physical mapping of cellular proteins
    • Blackstock, W.P. and Weir, M.P. (1999) Proteomics: quantitative and physical mapping of cellular proteins. Trends Biotechnol., 17, 121-127.
    • (1999) Trends Biotechnol. , vol.17 , pp. 121-127
    • Blackstock, W.P.1    Weir, M.P.2
  • 10
    • 0029587166 scopus 로고
    • A method to predict functional residues in proteins
    • Casari, G., Sander, C. and Valencia, A. (1995) A method to predict functional residues in proteins. Nat. Struct. Biol., 2, 171-178.
    • (1995) Nat. Struct. Biol. , vol.2 , pp. 171-178
    • Casari, G.1    Sander, C.2    Valencia, A.3
  • 11
    • 0003187567 scopus 로고    scopus 로고
    • The atomic structure of protein-protein recognition sites
    • Lo Conte, L., Chothia, C. and Janin, J. (1999) The atomic structure of protein-protein recognition sites. J. Mol. Biol., 285, 2177-2198.
    • (1999) J. Mol. Biol. , vol.285 , pp. 2177-2198
    • Lo Conte, L.1    Chothia, C.2    Janin, J.3
  • 12
    • 0033500894 scopus 로고    scopus 로고
    • Shufflet: Shuffling sequences while conserving the k-let counts
    • Coward, E. (1999) Shufflet: shuffling sequences while conserving the k-let counts. Bioinformatics, 15, 1058-1059.
    • (1999) Bioinformatics , vol.15 , pp. 1058-1059
    • Coward, E.1
  • 13
    • 0032473425 scopus 로고    scopus 로고
    • The structure of the tetratricopeptide repeats of protein phosphatase 5: Implications for TPR-mediated protein-protein interactions
    • Das, A.K., Cohen, P.W. and Barford, D. (1998) The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J., 17, 1192-1199.
    • (1998) EMBO J. , vol.17 , pp. 1192-1199
    • Das, A.K.1    Cohen, P.W.2    Barford, D.3
  • 14
    • 0033040986 scopus 로고    scopus 로고
    • Proteomics: Translating genes into products?
    • Dove, A. (1999) Proteomics: translating genes into products? Nat. Biotechnol., 17, 233-236.
    • (1999) Nat. Biotechnol. , vol.17 , pp. 233-236
    • Dove, A.1
  • 15
    • 0033523989 scopus 로고    scopus 로고
    • Protein interaction maps for complete genomes based on gene fusion events
    • Enright, A.J., Ililopoulos, I., Kyrpides, N.C. and Ouzounis, C.A. (1999) Protein interaction maps for complete genomes based on gene fusion events. Nature, 402, 86-90.
    • (1999) Nature , vol.402 , pp. 86-90
    • Enright, A.J.1    Ililopoulos, I.2    Kyrpides, N.C.3    Ouzounis, C.A.4
  • 16
    • 0030293766 scopus 로고    scopus 로고
    • Protein-protein interactions: PDZ domain networks
    • Fanning, A.S. and Anderson, J.M. (1996) Protein-protein interactions: PDZ domain networks. Curr. Biol., 6, 1385-1388.
    • (1996) Curr. Biol. , vol.6 , pp. 1385-1388
    • Fanning, A.S.1    Anderson, J.M.2
  • 17
    • 0024406857 scopus 로고
    • A novel genetic system to detect protein-protein interactions
    • Fields, S. and Song, O.-K. (1989) A novel genetic system to detect protein-protein interactions. Nature, 340, 245-246.
    • (1989) Nature , vol.340 , pp. 245-246
    • Fields, S.1    Song, O.-K.2
  • 18
    • 0020680218 scopus 로고
    • Random sequences
    • Fitch, W.M. (1983) Random sequences. J. Mol. Biol., 163, 171-176.
    • (1983) J. Mol. Biol. , vol.163 , pp. 171-176
    • Fitch, W.M.1
  • 19
    • 0029055286 scopus 로고
    • Identification of a novel human zinc finger protein that specifically interacts with the activation domain of lentiviral tat proteins
    • Fridell, R.A., Harding, L.S., Bogerd, H.P. and Cullen, B.R. (1995) Identification of a novel human zinc finger protein that specifically interacts with the activation domain of lentiviral tat proteins. Virology, 209, 347-357.
    • (1995) Virology , vol.209 , pp. 347-357
    • Fridell, R.A.1    Harding, L.S.2    Bogerd, H.P.3    Cullen, B.R.4
  • 21
    • 0000448982 scopus 로고
    • Prediction of protein antigenic determinants from amino acid sequences
    • Hopp, T.P. and Woods, K.R. (1981) Prediction of protein antigenic determinants from amino acid sequences. Proc. Natl Acad. Sci. USA, 78, 3824-3828.
    • (1981) Proc. Natl Acad. Sci. USA , vol.78 , pp. 3824-3828
    • Hopp, T.P.1    Woods, K.R.2
  • 22
    • 0033832615 scopus 로고    scopus 로고
    • Predicting protein function by genomic context: Quantitative evaluation and qualitative inferences
    • Huynen, M., Snel, B., Lathe, W. and Bork, P. (2000) Predicting protein function by genomic context: quantitative evaluation and qualitative inferences. Genome Res., 10, 1204-1210.
    • (2000) Genome Res. , vol.10 , pp. 1204-1210
    • Huynen, M.1    Snel, B.2    Lathe, W.3    Bork, P.4
  • 23
    • 0034048878 scopus 로고    scopus 로고
    • A discriminative framework for detecting remote protein homologies
    • Jaakkola, T., Diekhans, M. and Haussler, D. (2000) A discriminative framework for detecting remote protein homologies. J. Comput. Biol., 7, 95-114.
    • (2000) J. Comput. Biol. , vol.7 , pp. 95-114
    • Jaakkola, T.1    Diekhans, M.2    Haussler, D.3
  • 24
    • 0002714543 scopus 로고    scopus 로고
    • Making large-scale support vector machine learning practical
    • chapter 11, MIT Press, Cambridge, MA
    • Joachims, T. (1999) Making large-scale support vector machine learning practical. In Advances in Kernel Methods - Support Vector Learning, chapter 11, MIT Press, Cambridge, MA, pp. 169-184.
    • (1999) Advances in Kernel Methods - Support Vector Learning , pp. 169-184
    • Joachims, T.1
  • 25
    • 0030028728 scopus 로고    scopus 로고
    • Principles of protein-protein interactions
    • Jones, S. and Thornton, J.M. (1996) Principles of protein-protein interactions. Proc. Natl Acad. Sci. USA, 93, 13-20.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 13-20
    • Jones, S.1    Thornton, J.M.2
  • 26
    • 0031565725 scopus 로고    scopus 로고
    • Prediction of protein-protein interaction sites using patch analysis
    • Jones, S. and Thornton, J.M. (1997) Prediction of protein-protein interaction sites using patch analysis. J. Mol. Biol., 272, 133-143.
    • (1997) J. Mol. Biol. , vol.272 , pp. 133-143
    • Jones, S.1    Thornton, J.M.2
  • 28
    • 0029930504 scopus 로고    scopus 로고
    • Prediction of potential protein-protein interaction sites from amino acid sequence. Identification of a fibrin polymerization site
    • Kini, R.M. and Evans, J.H. (1996) Prediction of potential protein-protein interaction sites from amino acid sequence. Identification of a fibrin polymerization site. FEBS Lett., 385, 81-86.
    • (1996) FEBS Lett. , vol.385 , pp. 81-86
    • Kini, R.M.1    Evans, J.H.2
  • 29
    • 0017309766 scopus 로고
    • Structural patterns in globular proteins
    • Levitt, M. and Chotia, C. (1976) Structural patterns in globular proteins. Nature, 261, 552-558.
    • (1976) Nature , vol.261 , pp. 552-558
    • Levitt, M.1    Chotia, C.2
  • 30
    • 0033618555 scopus 로고    scopus 로고
    • Detecting protein function and protein-protein interactions from genome sequences
    • Marcotte, E., Pellegrini, M., Ng, H.-L., Rice, D.W., Yeates, T.O. and Eisenberg, D. (1999) Detecting protein function and protein-protein interactions from genome sequences. Science, 285, 751-753.
    • (1999) Science , vol.285 , pp. 751-753
    • Marcotte, E.1    Pellegrini, M.2    Ng, H.-L.3    Rice, D.W.4    Yeates, T.O.5    Eisenberg, D.6
  • 31
    • 0014757386 scopus 로고
    • A general method applicable to the search for similarities in the amino acid sequence of two proteins
    • Needleman, S.B. and Wunsch, C.D. (1970) A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol., 48, 443-453.
    • (1970) J. Mol. Biol. , vol.48 , pp. 443-453
    • Needleman, S.B.1    Wunsch, C.D.2
  • 32
    • 0028076764 scopus 로고
    • The ancient regulatory-protein family of wd-repeat proteins
    • Neer, E.J., Schmidt, C.J., Nambudripad, R. and Smith, T.F. (1994) The ancient regulatory-protein family of wd-repeat proteins. Nature, 371, 297-300.
    • (1994) Nature , vol.371 , pp. 297-300
    • Neer, E.J.1    Schmidt, C.J.2    Nambudripad, R.3    Smith, T.F.4
  • 34
    • 0028859279 scopus 로고
    • Protein modules and signalling networks
    • Pawson, T. (1995) Protein modules and signalling networks. Nature, 373, 573-580.
    • (1995) Nature , vol.373 , pp. 573-580
    • Pawson, T.1
  • 35
    • 0031457622 scopus 로고    scopus 로고
    • Signaling through scaffold, anchoring, and adaptor proteins
    • Pawson, T. and Scott, J.D. (1997) Signaling through scaffold, anchoring, and adaptor proteins. Science, 278, 2075-2080.
    • (1997) Science , vol.278 , pp. 2075-2080
    • Pawson, T.1    Scott, J.D.2
  • 36
    • 0030821675 scopus 로고    scopus 로고
    • Correlated mutations contain information about protein-protein interaction
    • Pazos, F., Helmer-Citterich, M., Ausiello, G. and Valencia, A. (1997) Correlated mutations contain information about protein-protein interaction. J. Mol. Biol., 1, 511-523.
    • (1997) J. Mol. Biol. , vol.1 , pp. 511-523
    • Pazos, F.1    Helmer-Citterich, M.2    Ausiello, G.3    Valencia, A.4
  • 37
    • 0033057517 scopus 로고    scopus 로고
    • Eukaryotic signalling domain homologues in Archaea and Bacteria. Ancient ancestry and horizontal gene transfer
    • Ponting, C.P., Aravind, L., Schultz, J., Bork, P. and Koonin, E.V. (1999) Eukaryotic signalling domain homologues in Archaea and Bacteria. Ancient ancestry and horizontal gene transfer. J. Mol. Biol., 289, 729-745.
    • (1999) J. Mol. Biol. , vol.289 , pp. 729-745
    • Ponting, C.P.1    Aravind, L.2    Schultz, J.3    Bork, P.4    Koonin, E.V.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.