메뉴 건너뛰기




Volumn 19, Issue 8, 2003, Pages 923-929

Integrative approach for computationally inferring protein domain interactions

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ANALYTICAL ERROR; ARTICLE; COMPLEX FORMATION; COMPUTER ANALYSIS; CONTROLLED STUDY; DATA BASE; PREDICTION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN PROTEIN INTERACTION; TWO HYBRID SYSTEM; VALIDATION PROCESS; YEAST;

EID: 0038620469     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btg118     Document Type: Article
Times cited : (148)

References (25)
  • 1
    • 0033957834 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
    • Bairoch,A. and Apweiler,R. (2000) The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res., 28, 45-48.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 45-48
    • Bairoch, A.1    Apweiler, R.2
  • 4
    • 0035023445 scopus 로고    scopus 로고
    • Predicting protein-protein interactions from primary structure
    • Bock,J.R. and Gough,D.A. (2001) Predicting protein-protein interactions from primary structure. Bioinformatics, 17, 455-460.
    • (2001) Bioinformatics , vol.17 , pp. 455-460
    • Bock, J.R.1    Gough, D.A.2
  • 5
    • 0033957841 scopus 로고    scopus 로고
    • ProDom and ProDom-CG: Tools for protein domain analysis and whole genome comparisons
    • Corpet,F., Servant,F., Gouzy,J. and Kahn,D. (2000) ProDom and ProDom-CG:tools for protein domain analysis and whole genome comparisons. Nucleic Acids Res., 28, 267-269.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 267-269
    • Corpet, F.1    Servant, F.2    Gouzy, J.3    Kahn, D.4
  • 6
    • 0036374301 scopus 로고    scopus 로고
    • Inferring domain-domain interactions from protein-protein interactions
    • Proceedings of the ACM-SIGACT Sixth Annual International Conference on Computational Moledular Biology (RECOMB02). Washington, DC
    • Deng,M., Metah,S., Sun,F. and Chen,T. (2002) Inferring domain-domain interactions from protein-protein interactions. In Proceedings of the ACM-SIGACT Sixth Annual International Conference on Computational Moledular Biology (RECOMB02). Washington, DC, pp. 117-126.
    • (2002) , pp. 117-126
    • Deng, M.1    Metah, S.2    Sun, F.3    Chen, T.4
  • 7
    • 0038068783 scopus 로고    scopus 로고
    • The theory behind profile HMMs
    • Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids Cambridge University Press
    • Durbin,R., Eddy,S., Krogh,A. and Mitchison,G. (1998) The theory behind profile HMMs, Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids, Cambridge University Press.
    • (1998)
    • Durbin, R.1    Eddy, S.2    Krogh, A.3    Mitchison, G.4
  • 8
    • 0033523989 scopus 로고    scopus 로고
    • Protein interaction maps for complete genomes based on gene fusion events
    • Enright,A.J., Iliopoulos,I., Kyrpides,N.C. and Ouzounis,C.A. (1999) Protein interaction maps for complete genomes based on gene fusion events. Nature, 402, 86-90.
    • (1999) Nature , vol.402 , pp. 86-90
    • Enright, A.J.1    Iliopoulos, I.2    Kyrpides, N.C.3    Ouzounis, C.A.4
  • 9
    • 0036360139 scopus 로고    scopus 로고
    • Towards the prediction of complete protein-protein interaction networks
    • Gomez,S.M. and Rzhetsky,A. (2002) Towards the prediction of complete protein-protein interaction networks. Pac Symp Biocomput., 413-424.
    • (2002) Pac. Symp. Biocomput. , pp. 413-424
    • Gomez, S.M.1    Rzhetsky, A.2
  • 11
    • 0033974688 scopus 로고    scopus 로고
    • Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins
    • Ito,T., Tashiro,K., Muta,S., Ozawa,R., Chiba,T. et al. (2000) Toward a protein-protein interaction map of the budding yeast: a comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins. Proc. Natl Acad. Sci. USA, 97, 1143-1147.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 1143-1147
    • Ito, T.1    Tashiro, K.2    Muta, S.3    Ozawa, R.4    Chiba, T.5
  • 12
    • 0035836765 scopus 로고    scopus 로고
    • A comprehensive two-hybrid analysis to explore the yeast protein interactome
    • Ito,T., Chiba,T., Ozawa,R., Yoshida,M., Hattori,M. et al. (2001) A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc. Natl Acad. Sci. USA, 98, 4569-4574.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 4569-4574
    • Ito, T.1    Chiba, T.2    Ozawa, R.3    Yoshida, M.4    Hattori, M.5
  • 13
    • 0036606173 scopus 로고    scopus 로고
    • Text-based knowledge discovery: Search and mining of life-sciences documents
    • Mack,R. and Hehenberger,M. (2002) Text-based knowledge discovery: search and mining of life-sciences documents. Drug Discov. Today, 7, S89-S98.
    • (2002) Drug Discov. Today , vol.7
    • Mack, R.1    Hehenberger, M.2
  • 14
    • 0033618555 scopus 로고    scopus 로고
    • Detecting protein function and protein-protein interactions from genome sequences
    • Marcotte,E.M., Pellegrini,M., Ng,H.L., Rice,D.W., Yeates,T.O. et al. (1999a) Detecting protein function and protein-protein interactions from genome sequences. Science, 285, 751-753.
    • (1999) Science , vol.285 , pp. 751-753
    • Marcotte, E.M.1    Pellegrini, M.2    Ng, H.L.3    Rice, D.W.4    Yeates, T.O.5
  • 16
    • 0034712955 scopus 로고    scopus 로고
    • Genome-wide analysis of vaccinia virus protein-protein interactions
    • McCraith,S., Holtzman,T., Moss,B. and Fields,S. (2000) Genome-wide analysis of vaccinia virus protein-protein interactions. Proc. Natl Acad. Sci. USA, 97, 4879-4884.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 4879-4884
    • McCraith, S.1    Holtzman, T.2    Moss, B.3    Fields, S.4
  • 17
    • 0037161731 scopus 로고    scopus 로고
    • Comparative assessment of large-scale data sets of protein-protein interactions
    • von Mering,C., Krause,R., Snel,B., Cornell,M., Oliver,S.G. et al. (2002) Comparative assessment of large-scale data sets of protein-protein interactions. Nature, 417, 399-403.
    • (2002) Nature , vol.417 , pp. 399-403
    • von Mering, C.1    Krause, R.2    Snel, B.3    Cornell, M.4    Oliver, S.G.5
  • 18
    • 0001413266 scopus 로고    scopus 로고
    • Toward routine automatic pathway discovery from on-line scientific text abstracts
    • Ng,S.K. and Wong,M. (1999) Toward routine automatic pathway discovery from on-line scientific text abstracts. 10, 104-112.
    • (1999) , vol.10 , pp. 104-112
    • Ng, S.K.1    Wong, M.2
  • 19
    • 0035843145 scopus 로고    scopus 로고
    • The protein-protein interaction map of Helicobacter pylori
    • Rain,J.C., Selig,L., De Reuse,H., Battaglia,V., Reverdy,C. et al. (2001) The protein-protein interaction map of Helicobacter pylori. Nature, 409, 211-215.
    • (2001) Nature , vol.409 , pp. 211-215
    • Rain, C.1    Selig, L.2    De Reuse, H.3    Battaglia, V.4    Reverdy, C.5
  • 20
    • 0035943340 scopus 로고    scopus 로고
    • Correlated sequence-signatures as markers of protein-protein interaction
    • Sprinzak,E. and Margalit,H. (2001) Correlated sequence-signatures as markers of protein-protein interaction. J. Mol. Biol., 311, 681-692.
    • (2001) J. Mol. Biol. , vol.311 , pp. 681-692
    • Sprinzak, E.1    Margalit, H.2
  • 21
    • 0034628508 scopus 로고    scopus 로고
    • A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
    • Uetz,P., Giot,L., Cagney,G., Mansfield,T.A., Judson,R.S. et al. (2000) A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature, 403, 623-627.
    • (2000) Nature , vol.403 , pp. 623-627
    • Uetz, P.1    Giot, L.2    Cagney, G.3    Mansfield, T.A.4    Judson, R.S.5
  • 23
    • 0035224503 scopus 로고    scopus 로고
    • Protein-protein interaction map-inference using interacting domain profile pairs
    • Wojcik,J. and Schächter,V. (2001) Protein-protein interaction map-inference using interacting domain profile pairs. Bioinformatics, 17 (Suppl. 1), S296-305.
    • (2001) Bioinformatics , vol.17 , Issue.SUPPL. 1
    • Wojcik, J.1    Schächter, V.2
  • 24
    • 0036088133 scopus 로고    scopus 로고
    • DIP the database of interacting proteins: A research tool for studying cellular networks of protein interactions
    • Xenarios,I., Salwinski,L., Duan,X.J., Higney,P., Kim,S.M. et al. (2002) DIP the database of interacting proteins: a research tool for studying cellular networks of protein interactions. Nucleic Acids Res., 30, 303-305.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 303-305
    • Xenarios, I.1    Salwinski, L.2    Duan, X.J.3    Higney, P.4    Kim, S.M.5
  • 25
    • 0035860499 scopus 로고    scopus 로고
    • Global analysis of protein activities using proteome chips
    • Zhu,H., Bilgin,M., Bangham,R., Hall,D., Casamayor,A. et al. (2001) Global analysis of protein activities using proteome chips. Science, 293, 2101-2105.
    • (2001) Science , vol.293 , pp. 2101-2105
    • Zhu, H.1    Bilgin, M.2    Bangham, R.3    Hall, D.4    Casamayor, A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.