Histidine-tag-directed chromophores for tracer analyses in the analytical ultracentrifuge

Methods

Volumn 54, Issue 1, 2011, Pages 31-38

  Hellman, Lance M ^a   Zhao, Chunxia ^a   Melikishvili, Manana ^a   Tao, Xiaorong ^b   Hopper, James E ^b   Whiteheart, Sidney W ^a   Fried, Michael G ^a  

^a UNIVERSITY OF KENTUCKY   (United States)

^b OHIO STATE UNIVERSITY   (United States)

Author keywords

Analytical ultracentrifugation; Fluorescence; Histidine tag; Nitrilotriacetic acid; Tracer sedimentation

Indexed keywords

HISTIDINE; NITRILOTRIACETIC ACID; NUCLEIC ACID; TRACER;

CHROMATOPHORE; FLUORESCENCE; IMMOBILIZED METAL AFFINITY CHROMATOGRAPHY; PRIORITY JOURNAL; REVIEW; SEDIMENTATION RATE; SPECTRAL SENSITIVITY; ULTRACENTRIFUGE;

CHROMATOGRAPHY, AFFINITY; FLUORESCENT DYES; HISTIDINE; PROTEINS; ULTRACENTRIFUGATION;

EID: 79955580426     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2010.12.033     Document Type: Review

References (63)

1. Woychik N.A., Hampsey M. Cell 2002, 108:453-463.
2. Weake V.M., Workman J.L. Nat. Rev. Genet. 2010, 11:426-437.
3. Fletcher D.A., Mullins R.D. Nature 2010, 463:485-492.
4. Kim S., Coulombe P.A. Nat. Rev. Mol. Cell. Biol. 2010, 11:75-81.
5. Malsam J., Kreye S., Söllner T.H. Cell Mol. Life Sci. 2008, 65:2814-2832.
6. Rizo J., Rosenmund C. Nat. Struct. Mol. Biol. 2008, 15:665-674.
7. Plow E.F., Hoover-Plow J. Trends Cardiovasc. Med. 2004, 14:180-186.
8. Lord S.T. Curr. Opin. Hematol. 2007, 14:236-241.
9. Pryzdial E.L., Mann K.G. J. Biol. Chem. 1991, 266:8969-8977.
10. Rivas G., Fernandez J.A., Minton A.P. Biochemistry 1999, 38:9379-9388.
11. Morris M. Cell Biochem. Biophys. 2010, 56:19-37.
12. Gautier A., Juillerat A., Heinis C., Corrêa I.R., Kindermann M., Beaufils F., Johnsson K. Chem. Biol. 2008, 15:128-136.
13. Darawshe S., Rivas G., Minton A.P. Anal. Biochem. 1993, 209:130-135.
14. Darawshe S., Minton A.P. Anal. Biochem. 1994, 220:1-4.
15. Rivas G., Stafford W., Minton A.P. Methods 1999, 19:194-212.
16. Rivas G., Minton A.P. Biochem. Soc. Trans. 2003, 31:1015-1019.
17. Rivas G., Minton A.P. J. Mol. Recognit. 2004, 17:362-367.
18. MacGregor I.K., Anderson A.L., Laue T.M. Biophys. Chem. 2004, 108:165-185.
19. Kroe R.R., Laue T.M. Anal. Biochem. 2009, 390:1-13.
20. Hawe A., Sutter M., Jiskoot W. Pharm. Res. 2008, 25:1487-1499.
21. Cole J.L., Lary J.W., Laue T.P.M. Methods Cell Biol. 2008, 84:143-179.
22. Arnau J., Lauritzen C., Petersen G.E., Pedersen J. Protein Expr. Purif. 2006, 48:1-13.
23. Terpe K. Appl. Microbiol. Biotechnol. 2003, 60:523-533.
24. Zhao C., Hellman L.M., Zhan X., Bowman W.S., Whiteheart S.W., Fried M.G. Anal. Biochem. 2010, 399:237-245.
25. Whiteheart S.W., Rossnagel K., Buhrow S.A., Brunner M., Jaenicke R., Rothman J.E. J. Cell Biol. 1994, 126:945-954.
26. Daniels D.S., Woo T.T., Luu K.X., Noll D.M., Clarke N.D., Pegg A.E., Tainer J.A. Nat. Struct. Mol. Biol. 2004, 11:714-720.
27. Crone T.M., Kanugula S., Pegg A.E. Carcinogenesis 1995, 16:1687-1692.
28. Kapanidis A.N., Ebright Y.W., Ebright R.H. J. Am. Chem. Soc. 2001, 123:12123-12125.
29. Smith R.M., Martell A.E. Sci. Total Environ. 1987, 64:125-147.
30. Malhotra A. Methods Enzymol. 2009, 463:239-258.
31. Fessenden J.D. PLoS ONE 2009, 4:e7338.
32. Conato C., Henryk Kozlowski H., Mlynarz P., Pulidori F., Remelli M. Polyhedron 2002, 21:1469-1474.
33. Ojida A., Honda K., Shinmi D., Kiyonaka S.Y.M., Hamachi I. J. Am. Chem. Soc. 2006, 128:10452-10459.
34. Schuck P. Biophys. J. 2000, 78:1606-1619.
35. Dam J., Schuck P. Methods Enzymol. 2004, 384:185-212.
36. Cohen G., Eisenberg H. Biopolymers 1968, 6:1077-1100.
37. Daugherty M.A., Fried M.G. Methods Enzymol. 2003, 370:349-369.
38. J.R. Lakowicz, Principles of Fluorescence Spectroscopy, Plenum, NY, 1983.
39. Carr C.M., Munson M. EMBO Rep. 2007, 8:834-838.
40. Zhao C., Slevin J.T., Whiteheart S.W. FEBS Lett. 2007, 581:2140-2149.
41. Ellis R.J. Trends Biochem. Sci. 2001, 26:597-604.
42. Zimmerman S.B., Minton A.P. Annu. Rev. Biophys. Biomol. Struct. 1993, 22:27-65.
43. Adams C.A., Melikishvili M., Rodgers D.W., Rasimas J.J., Pegg A.E., Fried M.G. J. Mol. Biol. 2009, 389:248-263.
44. Yanisch-Perron C., Vieira J., Messing J. Gene 1985, 33:103-119.
45. McReynolds L., O'Malley B.W., Nisbet A.D., Fothergill J.E., Givol D., Fields S., Robertson M., Brownlee G.G. Nature 1978, 273:723-728.
46. B. Demeler, Curr. Protoc. Protein Sci. Chapter 7, Unit 7, 13.
47. Liu J., Nguyen M.D., Ya J.D., Shire S.J. J. Pharm. Sci. 2005, 94:1928-1940.
48. Bhat P.J., Hopper J.E. Mol. Cell. Biol. 1992, 12:2701-2707.
49. Traven A., Jelicic B., Sopta M. EMBO Rep. 2006, 7:496-499.
50. Goffeau A., Barrell B.G., Bussey H., Davis R.W., Dujon B., Feldmann H., Galibert F., Hoheisel J.D., Jacq C., Johnston M., Louis E.J., Mewes H.W., Murakami Y., Philippsen P., Tettelin H., Oliver S.G. Science 1996, 274(546):63-67.
51. Huang C.Y. Methods Enzymol. 1982, 87:509-525.
52. Huang C.Y., Zhou R., Yang D.C., Boon Chock P. Biophys. Chem. 2003, 100:143-149.
53. Huang Z., Hwang P., Watson D.S., Cao L., Szoka F.C. Bioconjug. Chem. 2009, 20:1667-1672.
54. Strunk J.J., Gregor I., Becker Y., Lamken P., Lata S., Reichel A., Enderlein J., Piehler J. Bioconjug. Chem. 2009, 20:41-46.
55. Janknecht R., de Martynoff G., Lou J., Hipskind R.A., Nordheim A., Stunnenberg H.G. Proc. Natl. Acad. Sc.i USA 1991, 88:8972-8976.
56. Laue T.M., Stafford W.F. Annu. Rev. Biophys. Biomol. Struct. 1999, 28:75-100.
57. Dam J., Schuck P. Biophys. J. 2005, 89:651-666.
58. Hanora A., Bernaudat F., Plieva F.M., Dainiak M.B., Bulow L., Galaev I.Y., Mattiasson B. J. Chromatogr. A 2005, 1087:38-44.
59. Lewis M.S., Shrager R.I., Kim S.J. Modern Analytical Ultracentrifugation 1994, 94-118. Birkhauser, Boston. T.M. Schuster, T.M. Laue (Eds.).
60. Ucci J.W., Cole J.L. Biophys. Chem. 2004, 108:127-140.
61. A. Balbo, P.H. Brown, E.H. Braswell, P. Schuck, 2007. Curr. Protoc. Immunol. Chapter 18, Unit 18 8.
62. Balbo A., Minor K.H., Velikovsky C.A., Mariuzza R.A., Peterson C.B., Schuck P. Proc. Natl. Acad. Sci. USA 2005, 102:81-86.
63. Berlier J.E., Rothe A., Bulle G., Bradford J., Gray D.R., Filanoski B.J., Telford W.G., Yue S., Liu J., Cheung C.-Y., Chang W., Hirsch J.D., Beechem J.M., Haugland R., Haugland R.P. J. Histochem. Cytochem. 2003, 51:1699-1712.