Structural studies by electron tomography: From cells to molecules

Annual Review of Biochemistry

Volumn 74, Issue , 2005, Pages 833-865

  Lučić, Vladan ^a   Förster, Friedrich ^a   Baumeister, Wolfgang ^a  

^a MAX PLANCK INSTITUTE OF BIOCHEMISTRY   (Germany)

Author keywords

Cryo; Electron microscopy; Image analysis

Indexed keywords

CELL ORGANELLE; CELL STRAIN; CELL ULTRASTRUCTURE; CRYOPRESERVATION; ELECTRON TOMOGRAPHY; FREEZING; HYDRATION; MACROMOLECULE; MEMBRANE STRUCTURE; PRIORITY JOURNAL; REVIEW; STRUCTURE ANALYSIS; THREE DIMENSIONAL IMAGING; TISSUE FIXATION; TISSUE PRESERVATION; TOMOGRAPHY;

ALGORITHMS; ANIMALS; CELLS; CRYOELECTRON MICROSCOPY; FOURIER ANALYSIS; IMAGE PROCESSING, COMPUTER-ASSISTED; MACROMOLECULAR SUBSTANCES; MOLECULAR STRUCTURE; ORGANELLES; TOMOGRAPHY;

EID: 14844330221     PISSN: 00664154     EISSN: None     Source Type: Book Series    
DOI: 10.1146/annurev.biochem.73.011303.074112     Document Type: Review

References (130)

1. Radon J. 1917. Ber. Sächs. Akad. Wiss. Leipzig, Math.-Phys. Kl. 69:262-77
2. DeRosier DJ, Klug A. 1968. Nature 217:130-34
3. Hart RG. 1968. Science 159(822):1464-67
4. Baumeister W, Grimm R, Walz J. 1999. Trends Cell Biol. 9(2):81-85
5. Matricardi VR, Moretz RC, Parsons DF. 1972. Science 177(45):268-70
6. Fernandez-Moran H. 1960. Ann. NY Acad. Sci. 85:689-713
7. Taylor KA, Glaeser RM. 1974. Science 186(4168):1036-37
8. Dubochet J, Adrian M, Chang JJ, Homo JC, Lepault J, et al. 1988. Q. Rev. Biophys. 21(2):129-228
9. Typke D, Dierksen K, Baumeister W. 1991. Automatic electron tomography. Proc. 49th Annu. Meet., EMSA, pp. 544-45. San Francisco, CA: San Francisco Press
10. Dierksen K, Typke D, Hegerl R, Koster A, Baumeister W. 1992. Ultramicroscopy 40:71-87
11. Koster AJ, Chen H, Sedat JW, Agard DA. 1992. Ultramicroscopy 46(1-4):207-27
12. Misell D, Burdett I. 1977. J. Microsc. 109:171-82
13. Hawkes P. 1992. See Ref. 128, pp. 17-38
14. Toyoshima C, Unwin N. 1988. Ultramicroscopy 25:279-92
15. Grimm R, Koster AJ, Ziese U, Typke D, Baumeister W. 1996. J. Microsc. 183:60-68
16. Grimm R, Bärmann M, Häckl W, Typke D, Sackmann E, Baumeister W. 1997. Biophys. J. 72:482-89
17. Grimm R, Singh H, Rachel R, Typke D, Zillig W, Baumeister W. 1998. Biophys. J. 74(2 Part 1):1031-42
18. Fan GY, Ellisman MH. 2000. J. Microsc. 200(Part 1):1-13
19. Fan GY, Ellisman MH. 1993. Ultramicroscopy 52(1):21-29
20. Fan GY, Datte P, Beuville E, Beche JF, Millaud J, et al. 1998. Ultramicroscopy 70(3):107-13
21. Dierksen K, Typke D, Hegerl R, Baumeister W. 1993. Ultramicroscopy 49:109-20
22. Dierksen K, Typke D, Hegerl R, Walz J, Sackmann E, Baumeister W. 1995. Biophys. J. 68(4):1416-22
23. Koster AJ, de Ruijter WJ, van den Bos A, van der Mast KD. 1989. Ultramicroscopy 27:251-72
24. Ziese U, Geerts WJ, Van der Krift TP, Verkleij AJ, Koster AJ. 2003. J. Microsc. 211(Part 2):179-85
25. Ziese U, Janssen AH, Murk JL, Geerts WJ, Van der Krift T, et al. 2002. J. Microsc. 205(Part 2):187-200
26. Zheng QS, Braunfeld MB, Sedat JW, Agard DA. 2004. J. Struct. Biol. 147(2): 91-101
27. Guckenberger R. 1982. Ultramicroscopy 9:167-74
28. Liu Y, Penczek P, McEwen B, Frank J. 1995. Ultramicroscopy 58:393-402
29. Taylor KA, Tang J, Cheng Y, Winkler H. 1997. J. Struct. Biol. 120(3):372-86
30. Lawrence M. 1992. See Ref. 128, pp. 197-204
31. Hoppe W, Hegerl R. 1980. In Computer Processing of Electron Microscope images, ed. PW Hawkes, pp. 127-85. Berlin/Heidelberg/New York:Springer-Verlag
32. Radermacher M. 1992. See Ref. 128, pp. 91-115
33. Harauz G, van Heel M. 1986. Optik 73:146-56
34. Gordon R, Bender R, Herman GT. 1970. J. Theor. Biol. 29(3):471-81
35. Crowther RA, Klug A. 1971. J. Theor. Biol. 32(1):199-203
36. Carazo J. 1992. See Ref. 128, pp. 117-66
37. Penczek P, Radermacher M, Frank J. 1992. Ultramicroscopy 40:33-53
38. Marabini R, Rietzel E, Schroeder R, Herman G, Carazo J. 1997. J. Struct. Biol. 120:363-71
39. Skoglund U, Ofverstedt LG, Burnett RM, Bricogne G. 1996. J. Struct. Biol. 117(3):173-88
40. Fernandez JJ, Lawrence AF, Roca J, Garcia I, Ellisman MH, Carazo JM. 2002. J. Struct. Biol. 138(1-2):6-20
41. Hegerl R, Hoppe W. 1976. Z. Naturforsch. Teil A 31a:1717-21
42. McEwen B, Downing K, Glaeser R. 1995. Ultramicroscopy 60:357-73
43. Saxberg B, Saxton W. 1981. Ultramicroscopy 6:85-90
44. Crowther R, DeRosier D, Klug A. 1970. Proc. R. Soc. London Ser. A 317:319-40
45. Saxton W, Baumeister W, Hahn M. 1984. Ultramicroscopy 13:57-70
46. Mastronarde DN. 1997. J. Struct. Biol. 120(3):343-52
47. Nickell S, Hegerl R, Baumeister W, Rachel R. 2003. J. Struct. Biol. 141(1):34-42
48. Penczek P, Marko M, Buttle K, Frank J. 1995. Ultramicroscopy 60:393-410
49. Frangakis A, Hegerl R. 2002. J. Struct. Biol. 138:105-13
50. Volkmann N. 2002. J. Struct. Biol. 138(1-2): 123-29
51. Frangakis AS, Forster F. 2004. Curr. Opin. Struct. Biol. 14(3):325-31
52. Frangakis A, Hegerl R. 2001. J. Struct. Biol. 135(3):239-50
53. Fernandez JJ, Li S. 2003. J. Struct. Biol. 144(1-2):152-61
54. Jiang W, Baker ML, Wu Q, Bajaj C, Chiu W. 2003. J. Struct. Biol. 144(1-2):114-22
55. Stoschek A, Hegerl R. 1997. J. Struct. Biol. 120:257-65
56. Medalia O, Weber I, Frangakis AS, Nicastro D, Gerisch G, Baumeister W. 2002. Science 298(5596):1209-13
57. Böhm J, Frangakis AS, Hegerl R, Nickell S, Typke D, Baumeister W. 2000. Proc. Natl. Acad. Sci. USA 97(26):14245-50
58. Frangakis AS, Bohm J, Forster F, Nickell S, Nicastro D, et al. 2002. Proc. Natl. Acad. Sci. USA 99(22):14153-58
59. Sali A, Glaeser R, Earnest T, Baumeister W. 2003. Nature 422(6928):216-25
60. Roseman AM. 2000. Acta Crystallogr. D 56:1332-40
61. Roseman AM. 2003. Ultramicroscopy 94(3-4):225-36
62. Rath BK, Hegerl R, Leith A, Shaikh TR, Wagenknecht T, Frank J. 2003. J. Struct. Biol. 144(1-2):95-103
63. Walz J, Tamura T, Tamura N, Baumeister W, Grimm R, Koster A. 1997. Mol. Cell 1(1):59-65
64. Nitsch M, Walz J, Typke D, Klumpp M, Essen LO, Baumeister W. 1998. Nat. Struct. Biol. 5(10):855-57
65. Förster F, Medalia O, Zauberman N, Baumeister W, Fass D. 2005. Proc. Natl Acad. Sci. USA 102:4729-34
66. Moor H. 1987. In Cryotechniques in Biological Electron Microscopy, ed. RA Steinbrecht, K Zierold, pp. 175-91. Berlin: Springer-Verlag
67. Murk JL, Posthuma G, Koster AJ, Geuze HJ, Verkleij AJ, et al. 2003. J. Microsc. 212(Part 1):81-90
68. Dubochet J, Blanc NS. 2001. Micron 32:91-99
69. McIntosh JR. 2001. J. Cell Biol. 153(6): F25-32
70. Al-Amoudi A, Dubochet J, Gnaegi H, Luthi W, Studer D. 2003. J. Microsc. 212(Part 1):26-33
71. Al-Amoudi A, Norlen LP, Dubochet J. 2004. J. Struct. Biol. 148(1):131-35
72. He W, Cowin P, Stokes DL. 2003. Science 302(5642):109-13
73. Tokuyasu KT. 1973. J. Cell Biol. 57(2): 551-65
74. Monaghan P, Perushinghe N, Müller M. 1998. J. Microsc. 192(3):248-58
75. Koster AJ, Klumperman J. 2003. Nat. Rev. Mol. Cell Biol. 4(Suppl.):S6-10
76. Gaietta G, Deerinck TJ, Adams SR, Bouwer J, Tour O, et al. 2002. Science 296(5567):503-7
77. Talmon Y. 1987. In Electron Beam Radiation Damage to Organic and Biological Cryospecimens, ed. RA Steinbrecht, K Zierold, pp. 64-86. Berlin: Springer-Verlag
78. McEwen BF, Marko M, Hsieh CE, Mannella C. 2002. J. Struct. Biol. 138(1-2): 47-57
79. Winkler H, Taylor KA. 2003. J. Struct. Biol. 143(1):24-32
80. Luther PK. 1992. See Ref. 128, pp. 39-62
81. Ladinsky MS, Mastronarde DN, McIntosh JR, Howell KE, Staehelin LA. 1999. J. Cell Biol. 144(6):1135-49
82. McEwen BF, Marko M. 2001. J. Histochem. Cytochem. 49(5):553-64
83. Perkins GA, Frey TG. 2000. Micron 31(1):97-111
84. Frey TG, Mannella CA. 2000. Trends Biochem. Sci. 25(7):319-24
85. Mannella CA, Pfeiffer DR, Bradshaw PC, Moraru II, Slepchenko B, et al. 2001. IUBMB Life 52(3-5):93-100
86. Nicastro D, Frangakis AS, Typke D, Baumeister W. 2000. J. Struct. Biol. 129(1):48-56
87. Perkins GA, Song JY, Tarsa L, Deerinck TJ, Ellisman MH, Frey TG. 1998. J. Bioenerg. Biomembr. 30(5):431-42
88. Perkins GA, Renken CW, van der Klei IJ, Ellisman MH, Neupert W, Frey TG. 2001. Eur. J. Cell Biol. 80(2):139-50
89. Scorrano L, Ashiya M, Buttle K, Weiler S, Oakes SA, et al. 2002. Dev. Cell 2(1):55-67
90. Mogelsvang S, Marsh BJ, Ladinsky MS, Howell KE. 2004. Traffic 5(5):338-45
91. Ladinsky MS, Wu CC, McIntosh S, McIntosh JR, Howell KE. 2002. Mol. Biol. Cell 13(8):2810-25
92. Mogelsvang S, Gomez-Ospina N, Soderholm J, Click BS, Staehelin LA. 2003. Mol. Biol. Cell 14(6):2277-91
93. Marsh BJ, Volkmann N, McIntosh JR, Howell KE. 2004. Proc. Natl. Acad. Sci. USA 101(15):5565-70
94. Marsh BJ, Mastronarde DN, McIntosh JR, Howell KE. 2001. Biochem. Soc. Trans. 29(Part4):461-67
95. Mironov AA, Mironov AA Jr, Beznoussenko GV, Trucco A, Lupetti P, et al. 2003. Dev. Cell 5(4):583-94
96. Mironov AA, Beznoussenko GV, Nicoziani P, Martella O, Trucco A, et al. 2001. J. Cell Biol. 155(7):1225-38
97. Murk JL, Humbel BM, Ziese U, Griffith JM, Posthuma G, et al. 2003. Proc. Natl. Acad. Sci. USA 100(23):13332-37
98. Moritz M, Braunfeld MB, Sedat JW, Alberts B, Agard DA. 1995. Nature 378(6557):638-40
99. Moritz M, Braunfeld MB, Guenebaut V, Heuser J, Agard DA. 2000. Nat. Cell Biol. 2(6):365-70
100. Bullitt E, Rout MP, Kilmartin JV, Akey CW. 1997. Cell 89(7):1077-86
101. O'Toole ET, Winey M, McIntosh JR. 1999. Mol. Biol. Cell 10(6):2017-31
102. O'Toole ET, Giddings TH, McIntosh JR, Dutcher SK. 2003. Mol. Biol. Cell 14(7):2999-3012
103. O'Toole ET, McDonald KL, Mantler J, McIntosh JR, Hyman AA, Muller-Reichert T. 2003. J. Cell Biol. 163(3): 451-56
104. Otegui MS, Mastronarde DN, Kang BH, Bednarek SY, Staehelin LA. 2001. Plant Cell 13(9):2033-51
105. Otegui MS, Staehelin LA. 2004. Planta 218(4):501-15
106. Segui-Simarro JM, White EA, Staehelin LA. 2004. Plant Cell 16(4):836-56
107. Schmitz H, Reedy MC, Reedy MK, Tregear RT, Winkler H, Taylor KA. 1996. J. Mol. Biol. 264(2):279-301
108. Schmitz H, Reedy MC, Reedy MK, Tregear RT, Taylor KA. 1997. J. Cell Biol. 139(3):695-707
109. Taylor KA, Schmitz H, Reedy MC, Goldman YE, Franzini-Armstrong C, et al. 1999. Cell 99(4):421-31
110. Winkler H, Taylor KA. 1999. Ultramicroscopy 77(3-4):141-52
111. Chen LF, Winkler H, Reedy MK, Reedy MC, Taylor KA. 2002. J. Struct. Biol. 138(1-2):92-104
112. Pascual-Montano A, Taylor KA, Winkler H, Pascual-Marqui RD, Carazo JM. 2002. J. Struct. Biol. 138(1-2):114-22
113. Chen LF, Blanc E, Chapman MS, Taylor KA. 2001. J. Struct. Biol. 133(2-3):221-32
114. Baldock C, Koster AJ, Ziese U, Rock MJ, Sherratt MJ, et al. 2001. J. Cell Biol. 152(5):1045-56
115. Sloffler D, Feja B, Fahrenkrog B, Walz J, Typke D, Aebi U. 2003. J. Mol. Biol. 328(1):119-30
116. Beck M, Förster F, Ecke M, Plizko J, Melhior F, et al. 2004. Science 306(5700):1387-90
117. Zhu P, Chertova E, Bess JJ, Lifson JD, Arthur LO, et al. 2003. Proc. Natl. Acad. Sci. USA 100(26):15812-17
118. Bohm J, Lambert O, Frangakis AS, Letellier L, Baumeister W, Rigaud JL. 2001. Curr. Biol. 11(15):1168-75
119. Grunewald K, Desai P, Winkler DC, Heymann JB, Belnap DM, et al. 2003. Science 302(5649):1396-98
120. Cyrklaff M, Risco C, Fernández JJ, Jiménez MV, Estéban M, et al. 2005. Proc. Natl. Acad. Sci. USA 102:2772-77
121. Förster F, Baumeister W. 2004. Deleted in proof
122. Harlow ML, Ress D, Stoschek A, Marshall RM, McMahan UJ. 2001. Nature 409(6819):479-84
123. Wagenknecht T, Hsieh CE, Rath BK, Fleischer S, Marko M. 2002. Biophys. J. 83(5):2491-501
124. Rath BK, Hegerl R, Leith A, Shaikh TR, Wagenknecht T, Frank J. 2003. J. Struct. Biol. 144(1-2):95-103
125. Kürner J, Frangakis AS, Baumeister W. 2005. Science 307(5708):436-38
126. Deleted in proof
127. Baumeister W. 2002. Curr. Opin. Struct. Biol. 12(5):679-84
128. Frank J, ed. 1992. Electron Tomography. New York: Plenum
129. Hsieh C-E, Marko M, Frank J, Mannella CA. 2002. J. Struct. Biol. 138:63-73
130. Lučić V, Yang T, Schweikert G, Förster F, Baumeister W. 2005. Structure 13:423-34