-
1
-
-
66449084442
-
Infrastructure for the life sciences: Design and implementation of the UniProt website
-
Jain E, Bairoch A, Duvaud S, Phan I, Redaschi N, et al. (2009) Infrastructure for the life sciences: design and implementation of the UniProt website. BMC Bioinformatics 10: 136.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 136
-
-
Jain, E.1
Bairoch, A.2
Duvaud, S.3
Phan, I.4
Redaschi, N.5
-
2
-
-
75849153303
-
The Universal Protein Resource (UniProt) in 2010
-
Apweiler R, Martin MJ, O'Donovan C, Magrane M, Alam-Faruque Y, et al. (2010) The Universal Protein Resource (UniProt) in 2010. Nucleic Acids Res 38: D142-D148.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Apweiler, R.1
Martin, M.J.2
O'Donovan, C.3
Magrane, M.4
Alam-Faruque, Y.5
-
4
-
-
67650812322
-
Systems biology: Untangling the protein web
-
Blow N (2009) Systems biology: Untangling the protein web. Nature 460: 415-418.
-
(2009)
Nature
, vol.460
, pp. 415-418
-
-
Blow, N.1
-
5
-
-
36249019164
-
Protein interactions: Is seeing believing?
-
Mackay JP, Sunde M, Lowry JA, Crossley M, Matthews JM (2007) Protein interactions: is seeing believing? Trends Biochem Sci 32: 530-531.
-
(2007)
Trends Biochem Sci
, vol.32
, pp. 530-531
-
-
Mackay, J.P.1
Sunde, M.2
Lowry, J.A.3
Crossley, M.4
Matthews, J.M.5
-
7
-
-
42149137884
-
Defining genetic interaction
-
Mani R, St Onge RP, Hartman JLt, Giaever G, Roth FP (2008) Defining genetic interaction. Proc Natl Acad Sci U S A 105: 3461-3466.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 3461-3466
-
-
Mani, R.1
St Onge, R.P.2
Jlt, H.3
Giaever, G.4
Roth, F.P.5
-
8
-
-
58049198442
-
Human gene coexpression landscape: Confident network derived from tissue transcriptomic profiles
-
doi:10.1371/journal.pone.0003911
-
Prieto C, Risueño A, Fontanillo C, De las Rivas J (2008) Human gene coexpression landscape: confident network derived from tissue transcriptomic profiles. PLoS One 3: e3911. doi:10.1371/journal.pone.0003911.
-
(2008)
PLoS One
, vol.3
-
-
Prieto, C.1
Risueño, A.2
Fontanillo, C.3
de las Rivas, J.4
-
9
-
-
53349117774
-
High-quality binary protein interaction map of the yeast interactome network
-
Yu H, Braun P, Yildirim MA, Lemmens I, Venkatesan K, et al. (2008) High-quality binary protein interaction map of the yeast interactome network. Science 322: 104-110.
-
(2008)
Science
, vol.322
, pp. 104-110
-
-
Yu, H.1
Braun, P.2
Yildirim, M.A.3
Lemmens, I.4
Venkatesan, K.5
-
11
-
-
34548418142
-
Methods for the detection and analysis of protein-protein interactions
-
Berggard T, Linse S, James P (2007) Methods for the detection and analysis of protein-protein interactions. Proteomics 7: 2833-2842.
-
(2007)
Proteomics
, vol.7
, pp. 2833-2842
-
-
Berggard, T.1
Linse, S.2
James, P.3
-
13
-
-
34047202181
-
Deciphering protein-protein interactions. Part I. Experimental techniques and databases
-
doi:10.1371/journal.pcbi. 0030042
-
Shoemaker BA, Panchenko AR (2007) Deciphering protein-protein interactions. Part I. Experimental techniques and databases. PLoS Comput Biol 3: e42. doi:10.1371/journal.pcbi. 0030042.
-
(2007)
PLoS Comput Biol
, vol.3
-
-
Shoemaker, B.A.1
Panchenko, A.R.2
-
14
-
-
64349094767
-
Tissue specificity and the human protein interaction network
-
Bossi A, Lehner B (2009) Tissue specificity and the human protein interaction network. Mol Syst Biol 5: 260.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 260
-
-
Bossi, A.1
Lehner, B.2
-
15
-
-
65549102777
-
Protein - protein interaction databases: Keeping up with growing interactomes
-
Lehne B, Schlitt T (2009) Protein - protein interaction databases: Keeping up with growing interactomes. Hum Genomics 3: 291-297.
-
(2009)
Hum Genomics
, vol.3
, pp. 291-297
-
-
Lehne, B.1
Schlitt, T.2
-
16
-
-
58149213932
-
Literature-curated protein interaction datasets
-
Cusick ME, Yu H, Smolyar A, Venkatesan K, Carvunis AR, et al. (2009) Literature-curated protein interaction datasets. Nat Methods 6: 39-46.
-
(2009)
Nat Methods
, vol.6
, pp. 39-46
-
-
Cusick, M.E.1
Yu, H.2
Smolyar, A.3
Venkatesan, K.4
Carvunis, A.R.5
-
17
-
-
73349085604
-
Recurated protein interaction datasets
-
Salwinski L, Licata L, Winter A, Thorneycroft D, Khadake J, et al. (2009) Recurated protein interaction datasets. Nat Methods 6: 860-861.
-
(2009)
Nat Methods
, vol.6
, pp. 860-861
-
-
Salwinski, L.1
Licata, L.2
Winter, A.3
Thorneycroft, D.4
Khadake, J.5
-
18
-
-
34247586171
-
Deciphering protein-protein interactions. Part II. Computational methods to predict protein and domain interaction partners
-
doi:10.1371/journal.pcbi.0030043
-
Shoemaker BA, Panchenko AR (2007) Deciphering protein-protein interactions. Part II. Computational methods to predict protein and domain interaction partners. PLoS Comput Biol 3: e43. doi:10.1371/journal.pcbi.0030043.
-
(2007)
PLoS Comput Biol
, vol.3
-
-
Shoemaker, B.A.1
Panchenko, A.R.2
-
19
-
-
0347755535
-
The Database of Interacting Proteins: 2004 update
-
Salwinski L, Miller CS, Smith AJ, Pettit FK, Bowie JU, et al. (2004) The Database of Interacting Proteins: 2004 update. Nucleic Acids Res 32: D449-D451.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Salwinski, L.1
Miller, C.S.2
Smith, A.J.3
Pettit, F.K.4
Bowie, J.U.5
-
20
-
-
75549087047
-
The IntAct molecular interaction database in 2010
-
Aranda B, Achuthan P, Alam-Faruque Y, Armean I, Bridge A, et al. (2010) The IntAct molecular interaction database in 2010. Nucleic Acids Res 38: D525-D531.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Aranda, B.1
Achuthan, P.2
Alam-Faruque, Y.3
Armean, I.4
Bridge, A.5
-
21
-
-
75549083295
-
MINT, the molecular interaction database: 2009 update
-
Ceol A, Chatr Aryamontri A, Licata L, Peluso D, Briganti L, et al. (2010) MINT, the molecular interaction database: 2009 update. Nucleic Acids Res 38: D532-D539.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Ceol, A.1
Chatr Aryamontri, A.2
Licata, L.3
Peluso, D.4
Briganti, L.5
-
22
-
-
34249107988
-
The minimum information required for reporting a molecular interaction experiment (MIMIx)
-
Orchard S, Salwinski L, Kerrien S, Montecchi-Palazzi L, Oesterheld M, et al. (2007) The minimum information required for reporting a molecular interaction experiment (MIMIx). Nat Biotechnol 25: 894-898.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 894-898
-
-
Orchard, S.1
Salwinski, L.2
Kerrien, S.3
Montecchi-palazzi, L.4
Oesterheld, M.5
-
23
-
-
33747853260
-
APID: Agile Protein Interaction DataAnalyzer
-
Prieto C, De Las Rivas J (2006) APID: Agile Protein Interaction DataAnalyzer. Nucleic Acids Res 34: W298-W302.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Prieto, C.1
de Las Rivas, J.2
-
25
-
-
58149271021
-
Integrated network analysis platform for protein-protein interactions
-
Wu J, Vallenius T, Ovaska K, Westermarck J, Makela TP, et al. (2009) Integrated network analysis platform for protein-protein interactions. Nat Methods 6: 75-77.
-
(2009)
Nat Methods
, vol.6
, pp. 75-77
-
-
Wu, J.1
Vallenius, T.2
Ovaska, K.3
Westermarck, J.4
Makela, T.P.5
-
26
-
-
0242317678
-
On the number of proteinprotein interactions in the yeast proteome
-
Grigoriev A (2003) On the number of proteinprotein interactions in the yeast proteome. Nucleic Acids Res 31: 4157-4161.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 4157-4161
-
-
Grigoriev, A.1
-
27
-
-
77949345211
-
Structural domain-domain interactions: Assessment and comparison with protein-protein interaction data to improve the interactome
-
Prieto C, De Las Rivas J (2010) Structural domain-domain interactions: assessment and comparison with protein-protein interaction data to improve the interactome. Proteins 78: 109-117.
-
(2010)
Proteins
, vol.78
, pp. 109-117
-
-
Prieto, C.1
de Las Rivas, J.2
-
28
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, et al. (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 13: 2498-2504.
-
(2003)
Genome Res
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
-
30
-
-
38549173606
-
The BioGRID Interaction Database: 2008 update
-
Breitkreutz BJ, Stark C, Reguly T, Boucher L, Breitkreutz A, et al. (2008) The BioGRID Interaction Database: 2008 update. Nucleic Acids Res 36: D637-D640.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Breitkreutz, B.J.1
Stark, C.2
Reguly, T.3
Boucher, L.4
Breitkreutz, A.5
-
31
-
-
58049196842
-
Integrating and annotating the interactome using the MiMI plugin for cytoscape
-
Gao J, Ade AS, Tarcea VG, Weymouth TE, Mirel BR, et al. (2009) Integrating and annotating the interactome using the MiMI plugin for cytoscape. Bioinformatics 25: 137-138.
-
(2009)
Bioinformatics
, vol.25
, pp. 137-138
-
-
Gao, J.1
Ade, A.S.2
Tarcea, V.G.3
Weymouth, T.E.4
Mirel, B.R.5
-
32
-
-
58149193234
-
STRING 8 - a global view on proteins and their functional interactions in 630 organisms
-
Jensen LJ, Kuhn M, Stark M, Chaffron S, Creevey C, et al. (2009) STRING 8 - a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res 37: D412-D416.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Jensen, L.J.1
Kuhn, M.2
Stark, M.3
Chaffron, S.4
Creevey, C.5
-
33
-
-
48449090785
-
KEGG Atlas mapping for global analysis of metabolic pathways
-
Okuda S, Yamada T, Hamajima M, Itoh M, Katayama T, et al. (2008) KEGG Atlas mapping for global analysis of metabolic pathways. Nucleic Acids Res 36: W423-W426.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Okuda, S.1
Yamada, T.2
Hamajima, M.3
Itoh, M.4
Katayama, T.5
-
34
-
-
75549090213
-
KEGG for representation and analysis of molecular networks involving diseases and drugs
-
Kanehisa M, Goto S, Furumichi M, Tanabe M, Hirakawa M (2010) KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res 38: D355-D360.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Kanehisa, M.1
Goto, S.2
Furumichi, M.3
Tanabe, M.4
Hirakawa, M.5
|